data_5J6D
#
_model_server_result.job_id            vL3H80PXM4CvgI1_GJyK0w 
_model_server_result.datetime_utc      '2024-11-23 05:15:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5J6D 
#
_exptl.entry_id    5J6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5J6D 
_cell.length_a            58.726 
_cell.length_b            63.561 
_cell.length_c            156.468 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 171 A HIS 272 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 A NE2 HIS 176 A HIS 277 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc3 A OE2 GLU 216 A GLU 317 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 C FE FE . A FE 501 1_555 D N TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc5 C FE FE . A FE 501 1_555 D O2 TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc6 C FE FE . A FE 501 1_555 D O3 TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc7 B NE2 HIS 171 B HIS 272 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc8 B NE2 HIS 176 B HIS 277 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc9 B OE2 GLU 216 B GLU 317 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc10 G FE FE . B FE 501 1_555 H N TRS . B TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc11 G FE FE . B FE 501 1_555 H O1 TRS . B TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc12 G FE FE . B FE 501 1_555 H O2 TRS . B TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 425 n n 
C C2 TRS sing 426 n n 
C C3 TRS sing 427 n n 
C N TRS sing 428 n n 
C1 O1 TRS sing 429 n n 
C1 H11 TRS sing 430 n n 
C1 H12 TRS sing 431 n n 
C2 O2 TRS sing 432 n n 
C2 H21 TRS sing 433 n n 
C2 H22 TRS sing 434 n n 
C3 O3 TRS sing 435 n n 
C3 H31 TRS sing 436 n n 
C3 H32 TRS sing 437 n n 
N HN1 TRS sing 438 n n 
N HN2 TRS sing 439 n n 
N HN3 TRS sing 440 n n 
O1 HO1 TRS sing 441 n n 
O2 HO2 TRS sing 442 n n 
O3 HO3 TRS sing 443 n n 
#
_atom_sites.entry_id                     5J6D 
_atom_sites.fract_transf_matrix[1][1]    0.017028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 501 1 FE FE . 
D 3 TRS A 1 502 3 TRS TRS . 
E 4 GOL A 1 503 6 GOL GOL . 
F 5 6H5 A 1 504 1 6H5 348 . 
G 2 FE B 1 501 2 FE FE . 
H 3 TRS B 1 502 4 TRS TRS . 
I 4 GOL B 1 503 5 GOL GOL . 
J 5 6H5 B 1 504 2 6H5 348 . 
K 6 HOH A 1 601 83 HOH HOH . 
K 6 HOH A 2 602 6 HOH HOH . 
K 6 HOH A 3 603 75 HOH HOH . 
K 6 HOH A 4 604 8 HOH HOH . 
K 6 HOH A 5 605 66 HOH HOH . 
K 6 HOH A 6 606 27 HOH HOH . 
K 6 HOH A 7 607 32 HOH HOH . 
K 6 HOH A 8 608 39 HOH HOH . 
K 6 HOH A 9 609 135 HOH HOH . 
K 6 HOH A 10 610 105 HOH HOH . 
K 6 HOH A 11 611 128 HOH HOH . 
K 6 HOH A 12 612 82 HOH HOH . 
K 6 HOH A 13 613 92 HOH HOH . 
K 6 HOH A 14 614 49 HOH HOH . 
K 6 HOH A 15 615 107 HOH HOH . 
K 6 HOH A 16 616 43 HOH HOH . 
K 6 HOH A 17 617 29 HOH HOH . 
K 6 HOH A 18 618 56 HOH HOH . 
K 6 HOH A 19 619 63 HOH HOH . 
K 6 HOH A 20 620 11 HOH HOH . 
K 6 HOH A 21 621 72 HOH HOH . 
K 6 HOH A 22 622 104 HOH HOH . 
K 6 HOH A 23 623 9 HOH HOH . 
K 6 HOH A 24 624 115 HOH HOH . 
K 6 HOH A 25 625 93 HOH HOH . 
K 6 HOH A 26 626 86 HOH HOH . 
K 6 HOH A 27 627 133 HOH HOH . 
K 6 HOH A 28 628 21 HOH HOH . 
K 6 HOH A 29 629 87 HOH HOH . 
K 6 HOH A 30 630 79 HOH HOH . 
K 6 HOH A 31 631 57 HOH HOH . 
K 6 HOH A 32 632 36 HOH HOH . 
K 6 HOH A 33 633 99 HOH HOH . 
K 6 HOH A 34 634 118 HOH HOH . 
K 6 HOH A 35 635 34 HOH HOH . 
K 6 HOH A 36 636 7 HOH HOH . 
K 6 HOH A 37 637 137 HOH HOH . 
K 6 HOH A 38 638 89 HOH HOH . 
K 6 HOH A 39 639 103 HOH HOH . 
K 6 HOH A 40 640 117 HOH HOH . 
K 6 HOH A 41 641 41 HOH HOH . 
K 6 HOH A 42 642 12 HOH HOH . 
K 6 HOH A 43 643 60 HOH HOH . 
K 6 HOH A 44 644 52 HOH HOH . 
K 6 HOH A 45 645 16 HOH HOH . 
K 6 HOH A 46 646 5 HOH HOH . 
K 6 HOH A 47 647 100 HOH HOH . 
K 6 HOH A 48 648 23 HOH HOH . 
K 6 HOH A 49 649 122 HOH HOH . 
K 6 HOH A 50 650 44 HOH HOH . 
K 6 HOH A 51 651 130 HOH HOH . 
K 6 HOH A 52 652 126 HOH HOH . 
K 6 HOH A 53 653 45 HOH HOH . 
K 6 HOH A 54 654 109 HOH HOH . 
K 6 HOH A 55 655 47 HOH HOH . 
K 6 HOH A 56 656 138 HOH HOH . 
K 6 HOH A 57 657 10 HOH HOH . 
K 6 HOH A 58 658 69 HOH HOH . 
K 6 HOH A 59 659 24 HOH HOH . 
K 6 HOH A 60 660 18 HOH HOH . 
K 6 HOH A 61 661 84 HOH HOH . 
K 6 HOH A 62 662 1 HOH HOH . 
K 6 HOH A 63 663 114 HOH HOH . 
K 6 HOH A 64 664 19 HOH HOH . 
K 6 HOH A 65 665 51 HOH HOH . 
K 6 HOH A 66 666 127 HOH HOH . 
K 6 HOH A 67 667 15 HOH HOH . 
K 6 HOH A 68 668 4 HOH HOH . 
K 6 HOH A 69 669 64 HOH HOH . 
K 6 HOH A 70 670 124 HOH HOH . 
K 6 HOH A 71 671 25 HOH HOH . 
K 6 HOH A 72 672 26 HOH HOH . 
K 6 HOH A 73 673 50 HOH HOH . 
K 6 HOH A 74 674 85 HOH HOH . 
K 6 HOH A 75 675 54 HOH HOH . 
K 6 HOH A 76 676 119 HOH HOH . 
K 6 HOH A 77 677 20 HOH HOH . 
K 6 HOH A 78 678 108 HOH HOH . 
K 6 HOH A 79 679 113 HOH HOH . 
K 6 HOH A 80 680 17 HOH HOH . 
K 6 HOH A 81 681 139 HOH HOH . 
K 6 HOH A 82 682 38 HOH HOH . 
K 6 HOH A 83 683 76 HOH HOH . 
K 6 HOH A 84 684 35 HOH HOH . 
K 6 HOH A 85 685 94 HOH HOH . 
K 6 HOH A 86 686 58 HOH HOH . 
K 6 HOH A 87 687 125 HOH HOH . 
K 6 HOH A 88 688 46 HOH HOH . 
K 6 HOH A 89 689 70 HOH HOH . 
K 6 HOH A 90 690 42 HOH HOH . 
K 6 HOH A 91 691 22 HOH HOH . 
K 6 HOH A 92 692 96 HOH HOH . 
K 6 HOH A 93 693 121 HOH HOH . 
K 6 HOH A 94 694 33 HOH HOH . 
K 6 HOH A 95 695 98 HOH HOH . 
K 6 HOH A 96 696 31 HOH HOH . 
K 6 HOH A 97 697 37 HOH HOH . 
K 6 HOH A 98 698 71 HOH HOH . 
K 6 HOH A 99 699 53 HOH HOH . 
K 6 HOH A 100 700 97 HOH HOH . 
K 6 HOH A 101 701 28 HOH HOH . 
K 6 HOH A 102 702 106 HOH HOH . 
K 6 HOH A 103 703 40 HOH HOH . 
K 6 HOH A 104 704 91 HOH HOH . 
K 6 HOH A 105 705 61 HOH HOH . 
K 6 HOH A 106 706 2 HOH HOH . 
K 6 HOH A 107 707 13 HOH HOH . 
K 6 HOH A 108 708 59 HOH HOH . 
K 6 HOH A 109 709 90 HOH HOH . 
K 6 HOH A 110 710 30 HOH HOH . 
K 6 HOH A 111 711 129 HOH HOH . 
K 6 HOH A 112 712 134 HOH HOH . 
K 6 HOH A 113 713 48 HOH HOH . 
K 6 HOH A 114 714 55 HOH HOH . 
K 6 HOH A 115 715 101 HOH HOH . 
K 6 HOH A 116 716 102 HOH HOH . 
K 6 HOH A 117 717 88 HOH HOH . 
K 6 HOH A 118 718 65 HOH HOH . 
K 6 HOH A 119 719 80 HOH HOH . 
K 6 HOH A 120 720 78 HOH HOH . 
K 6 HOH A 121 721 123 HOH HOH . 
K 6 HOH A 122 722 95 HOH HOH . 
K 6 HOH A 123 723 120 HOH HOH . 
L 6 HOH B 1 601 140 HOH HOH . 
L 6 HOH B 2 602 110 HOH HOH . 
L 6 HOH B 3 603 111 HOH HOH . 
L 6 HOH B 4 604 14 HOH HOH . 
L 6 HOH B 5 605 74 HOH HOH . 
L 6 HOH B 6 606 73 HOH HOH . 
L 6 HOH B 7 607 3 HOH HOH . 
L 6 HOH B 8 608 116 HOH HOH . 
L 6 HOH B 9 609 112 HOH HOH . 
L 6 HOH B 10 610 62 HOH HOH . 
L 6 HOH B 11 611 68 HOH HOH . 
L 6 HOH B 12 612 132 HOH HOH . 
L 6 HOH B 13 613 136 HOH HOH . 
L 6 HOH B 14 614 67 HOH HOH . 
L 6 HOH B 15 615 77 HOH HOH . 
L 6 HOH B 16 616 81 HOH HOH . 
L 6 HOH B 17 617 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 -17.965 0.637 -7.122 1 24.79 ? C TRS 502 A 1 
HETATM 2 C C1 TRS . . . D 3 -18.375 0.75 -8.584 1 24.97 ? C1 TRS 502 A 1 
HETATM 3 C C2 TRS . . . D 3 -18.937 1.395 -6.236 1 24.77 ? C2 TRS 502 A 1 
HETATM 4 C C3 TRS . . . D 3 -16.536 1.138 -6.922 1 26.09 ? C3 TRS 502 A 1 
HETATM 5 N N TRS . . . D 3 -17.999 -0.821 -6.76 1 24.32 ? N TRS 502 A 1 
HETATM 6 O O1 TRS . . . D 3 -18.36 2.11 -9.029 1 26.16 ? O1 TRS 502 A 1 
HETATM 7 O O2 TRS . . . D 3 -18.663 1.07 -4.869 1 24.93 ? O2 TRS 502 A 1 
HETATM 8 O O3 TRS . . . D 3 -15.935 0.653 -5.702 1 25.62 ? O3 TRS 502 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#