data_5J7F # _model_server_result.job_id UNs7HnRksxlY451wi1WihA _model_server_result.datetime_utc '2025-02-05 04:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5J7F # _exptl.entry_id 5J7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 679.565 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({6-[(6-chloro-3-{1-[(4-chlorophenyl)methyl]-4-(4-fluorophenyl)-1H-imidazol-5-yl}-1H-indole-2-carbonyl)oxy]hexyl}amino)-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.48 _cell.angle_gamma 90 _cell.entry_id 5J7F _cell.length_a 37.758 _cell.length_b 174.75 _cell.length_c 37.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C35 H33 Cl2 F N4 O5' _chem_comp.formula_weight 679.565 _chem_comp.id 6GG _chem_comp.mon_nstd_flag . _chem_comp.name '4-({6-[(6-chloro-3-{1-[(4-chlorophenyl)methyl]-4-(4-fluorophenyl)-1H-imidazol-5-yl}-1H-indole-2-carbonyl)oxy]hexyl}amino)-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C25 6GG doub 1 n n C25 O26 6GG sing 2 n n C25 C24 6GG sing 3 n n C24 C23 6GG sing 4 n n C23 C21 6GG sing 5 n n C21 N20 6GG sing 6 n n C21 O22 6GG doub 7 n n F C40 6GG sing 8 n n N20 C19 6GG sing 9 n n C41 C40 6GG doub 10 n y C41 C42 6GG sing 11 n y C40 C39 6GG sing 12 n y C19 C17 6GG sing 13 n n C17 C16 6GG sing 14 n n C42 C37 6GG doub 15 n y C39 C38 6GG doub 16 n y C16 C13 6GG sing 17 n n C13 C12 6GG sing 18 n n C37 C38 6GG sing 19 n y C37 C15 6GG sing 20 n n N16 C15 6GG sing 21 n y N16 C18 6GG doub 22 n y C12 C3 6GG sing 23 n n C15 C14 6GG doub 24 n y C18 N13 6GG sing 25 n y C14 N13 6GG sing 26 n y C14 C44 6GG sing 27 n n C3 O1 6GG sing 28 n n O1 C60 6GG sing 29 n n N13 C5 6GG sing 30 n n C44 C45 6GG sing 31 n y C44 C48 6GG doub 32 n y C60 C48 6GG sing 33 n n C60 O2 6GG doub 34 n n C59 C45 6GG doub 35 n y C59 C58 6GG sing 36 n y C45 C46 6GG sing 37 n y C48 N49 6GG sing 38 n y C5 C6 6GG sing 39 n n C58 C57 6GG doub 40 n y N49 C46 6GG sing 41 n y C46 C56 6GG doub 42 n y C57 C56 6GG sing 43 n y C57 CL1 6GG sing 44 n n C11 C6 6GG doub 45 n y C11 C10 6GG sing 46 n y C6 C7 6GG sing 47 n y C10 C9 6GG doub 48 n y C7 C8 6GG doub 49 n y C9 C8 6GG sing 50 n y C9 CL2 6GG sing 51 n n O26 H1 6GG sing 52 n n C24 H2 6GG sing 53 n n C24 H3 6GG sing 54 n n C23 H4 6GG sing 55 n n C23 H5 6GG sing 56 n n N20 H6 6GG sing 57 n n C19 H7 6GG sing 58 n n C19 H8 6GG sing 59 n n C17 H9 6GG sing 60 n n C17 H10 6GG sing 61 n n C16 H11 6GG sing 62 n n C16 H12 6GG sing 63 n n C13 H13 6GG sing 64 n n C13 H14 6GG sing 65 n n C12 H15 6GG sing 66 n n C12 H16 6GG sing 67 n n C3 H17 6GG sing 68 n n C3 H18 6GG sing 69 n n N49 H19 6GG sing 70 n n C56 H20 6GG sing 71 n n C59 H21 6GG sing 72 n n C58 H22 6GG sing 73 n n C5 H23 6GG sing 74 n n C5 H24 6GG sing 75 n n C7 H25 6GG sing 76 n n C8 H26 6GG sing 77 n n C10 H27 6GG sing 78 n n C11 H28 6GG sing 79 n n C18 H29 6GG sing 80 n n C38 H30 6GG sing 81 n n C39 H31 6GG sing 82 n n C41 H32 6GG sing 83 n n C42 H33 6GG sing 84 n n # _atom_sites.entry_id 5J7F _atom_sites.fract_transf_matrix[1][1] 0.026484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6GG A 1 201 2 6GG m30 . F 2 6GG B 1 201 3 6GG m30 . G 2 6GG C 1 201 4 6GG m30 . H 2 6GG D 1 201 1 6GG m30 . I 3 HOH A 1 301 226 HOH HOH . I 3 HOH A 2 302 272 HOH HOH . I 3 HOH A 3 303 190 HOH HOH . I 3 HOH A 4 304 106 HOH HOH . I 3 HOH A 5 305 235 HOH HOH . I 3 HOH A 6 306 4 HOH HOH . I 3 HOH A 7 307 183 HOH HOH . I 3 HOH A 8 308 108 HOH HOH . I 3 HOH A 9 309 128 HOH HOH . I 3 HOH A 10 310 142 HOH HOH . I 3 HOH A 11 311 150 HOH HOH . I 3 HOH A 12 312 52 HOH HOH . I 3 HOH A 13 313 83 HOH HOH . I 3 HOH A 14 314 273 HOH HOH . I 3 HOH A 15 315 204 HOH HOH . I 3 HOH A 16 316 5 HOH HOH . I 3 HOH A 17 317 287 HOH HOH . I 3 HOH A 18 318 114 HOH HOH . I 3 HOH A 19 319 53 HOH HOH . I 3 HOH A 20 320 157 HOH HOH . I 3 HOH A 21 321 222 HOH HOH . I 3 HOH A 22 322 166 HOH HOH . I 3 HOH A 23 323 54 HOH HOH . I 3 HOH A 24 324 280 HOH HOH . I 3 HOH A 25 325 281 HOH HOH . I 3 HOH A 26 326 118 HOH HOH . I 3 HOH A 27 327 203 HOH HOH . I 3 HOH A 28 328 163 HOH HOH . I 3 HOH A 29 329 124 HOH HOH . I 3 HOH A 30 330 2 HOH HOH . I 3 HOH A 31 331 202 HOH HOH . I 3 HOH A 32 332 46 HOH HOH . I 3 HOH A 33 333 191 HOH HOH . I 3 HOH A 34 334 285 HOH HOH . I 3 HOH A 35 335 155 HOH HOH . I 3 HOH A 36 336 107 HOH HOH . I 3 HOH A 37 337 99 HOH HOH . I 3 HOH A 38 338 233 HOH HOH . I 3 HOH A 39 339 265 HOH HOH . J 3 HOH B 1 301 225 HOH HOH . J 3 HOH B 2 302 90 HOH HOH . J 3 HOH B 3 303 268 HOH HOH . J 3 HOH B 4 304 188 HOH HOH . J 3 HOH B 5 305 97 HOH HOH . J 3 HOH B 6 306 239 HOH HOH . J 3 HOH B 7 307 104 HOH HOH . J 3 HOH B 8 308 64 HOH HOH . J 3 HOH B 9 309 201 HOH HOH . J 3 HOH B 10 310 193 HOH HOH . J 3 HOH B 11 311 159 HOH HOH . J 3 HOH B 12 312 12 HOH HOH . J 3 HOH B 13 313 192 HOH HOH . J 3 HOH B 14 314 6 HOH HOH . J 3 HOH B 15 315 11 HOH HOH . J 3 HOH B 16 316 227 HOH HOH . J 3 HOH B 17 317 275 HOH HOH . J 3 HOH B 18 318 209 HOH HOH . J 3 HOH B 19 319 234 HOH HOH . J 3 HOH B 20 320 208 HOH HOH . J 3 HOH B 21 321 136 HOH HOH . J 3 HOH B 22 322 284 HOH HOH . J 3 HOH B 23 323 102 HOH HOH . J 3 HOH B 24 324 174 HOH HOH . J 3 HOH B 25 325 130 HOH HOH . J 3 HOH B 26 326 175 HOH HOH . J 3 HOH B 27 327 237 HOH HOH . J 3 HOH B 28 328 49 HOH HOH . J 3 HOH B 29 329 179 HOH HOH . J 3 HOH B 30 330 229 HOH HOH . J 3 HOH B 31 331 96 HOH HOH . J 3 HOH B 32 332 8 HOH HOH . J 3 HOH B 33 333 207 HOH HOH . J 3 HOH B 34 334 7 HOH HOH . J 3 HOH B 35 335 276 HOH HOH . J 3 HOH B 36 336 279 HOH HOH . J 3 HOH B 37 337 218 HOH HOH . K 3 HOH C 1 301 65 HOH HOH . K 3 HOH C 2 302 230 HOH HOH . K 3 HOH C 3 303 51 HOH HOH . K 3 HOH C 4 304 194 HOH HOH . K 3 HOH C 5 305 20 HOH HOH . K 3 HOH C 6 306 139 HOH HOH . K 3 HOH C 7 307 180 HOH HOH . K 3 HOH C 8 308 196 HOH HOH . K 3 HOH C 9 309 13 HOH HOH . K 3 HOH C 10 310 41 HOH HOH . K 3 HOH C 11 311 240 HOH HOH . K 3 HOH C 12 312 137 HOH HOH . K 3 HOH C 13 313 44 HOH HOH . K 3 HOH C 14 314 94 HOH HOH . K 3 HOH C 15 315 21 HOH HOH . K 3 HOH C 16 316 241 HOH HOH . K 3 HOH C 17 317 22 HOH HOH . K 3 HOH C 18 318 283 HOH HOH . K 3 HOH C 19 319 141 HOH HOH . K 3 HOH C 20 320 16 HOH HOH . K 3 HOH C 21 321 244 HOH HOH . K 3 HOH C 22 322 66 HOH HOH . K 3 HOH C 23 323 211 HOH HOH . K 3 HOH C 24 324 43 HOH HOH . K 3 HOH C 25 325 271 HOH HOH . K 3 HOH C 26 326 238 HOH HOH . K 3 HOH C 27 327 213 HOH HOH . K 3 HOH C 28 328 138 HOH HOH . K 3 HOH C 29 329 85 HOH HOH . K 3 HOH C 30 330 100 HOH HOH . K 3 HOH C 31 331 105 HOH HOH . K 3 HOH C 32 332 77 HOH HOH . K 3 HOH C 33 333 242 HOH HOH . K 3 HOH C 34 334 264 HOH HOH . L 3 HOH D 1 301 68 HOH HOH . L 3 HOH D 2 302 80 HOH HOH . L 3 HOH D 3 303 253 HOH HOH . L 3 HOH D 4 304 78 HOH HOH . L 3 HOH D 5 305 258 HOH HOH . L 3 HOH D 6 306 45 HOH HOH . L 3 HOH D 7 307 27 HOH HOH . L 3 HOH D 8 308 199 HOH HOH . L 3 HOH D 9 309 184 HOH HOH . L 3 HOH D 10 310 84 HOH HOH . L 3 HOH D 11 311 255 HOH HOH . L 3 HOH D 12 312 198 HOH HOH . L 3 HOH D 13 313 215 HOH HOH . L 3 HOH D 14 314 182 HOH HOH . L 3 HOH D 15 315 24 HOH HOH . L 3 HOH D 16 316 89 HOH HOH . L 3 HOH D 17 317 269 HOH HOH . L 3 HOH D 18 318 282 HOH HOH . L 3 HOH D 19 319 30 HOH HOH . L 3 HOH D 20 320 81 HOH HOH . L 3 HOH D 21 321 55 HOH HOH . L 3 HOH D 22 322 251 HOH HOH . L 3 HOH D 23 323 121 HOH HOH . L 3 HOH D 24 324 148 HOH HOH . L 3 HOH D 25 325 31 HOH HOH . L 3 HOH D 26 326 25 HOH HOH . L 3 HOH D 27 327 249 HOH HOH . L 3 HOH D 28 328 146 HOH HOH . L 3 HOH D 29 329 79 HOH HOH . L 3 HOH D 30 330 42 HOH HOH . L 3 HOH D 31 331 248 HOH HOH . L 3 HOH D 32 332 245 HOH HOH . L 3 HOH D 33 333 197 HOH HOH . L 3 HOH D 34 334 278 HOH HOH . L 3 HOH D 35 335 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O28 6GG . . . E 2 52.37 14.522 37.699 1 52.7 ? O28 6GG 201 A 1 HETATM 2 C C25 6GG . . . E 2 52.795 13.549 38.272 1 53.75 ? C25 6GG 201 A 1 HETATM 3 O O26 6GG . . . E 2 54.064 13.509 38.651 1 55.3 ? O26 6GG 201 A 1 HETATM 4 C C24 6GG . . . E 2 51.884 12.371 38.53 1 51.05 ? C24 6GG 201 A 1 HETATM 5 C C23 6GG . . . E 2 50.578 12.549 37.775 1 46 ? C23 6GG 201 A 1 HETATM 6 C C21 6GG . . . E 2 50.081 11.236 37.232 1 44.06 ? C21 6GG 201 A 1 HETATM 7 O O22 6GG . . . E 2 50.861 10.363 36.868 1 39.29 ? O22 6GG 201 A 1 HETATM 8 N N20 6GG . . . E 2 48.765 11.142 37.18 1 36.43 ? N20 6GG 201 A 1 HETATM 9 C C19 6GG . . . E 2 48.137 9.995 36.59 1 36.42 ? C19 6GG 201 A 1 HETATM 10 C C17 6GG . . . E 2 46.781 9.775 37.234 1 34.19 ? C17 6GG 201 A 1 HETATM 11 C C16 6GG . . . E 2 46.184 8.616 36.469 1 33.88 ? C16 6GG 201 A 1 HETATM 12 C C13 6GG . . . E 2 44.751 8.395 36.871 1 29.81 ? C13 6GG 201 A 1 HETATM 13 C C12 6GG . . . E 2 44.26 7.311 35.926 1 30.6 ? C12 6GG 201 A 1 HETATM 14 C C3 6GG . . . E 2 42.972 6.718 36.419 1 26.07 ? C3 6GG 201 A 1 HETATM 15 O O1 6GG . . . E 2 43.231 6.135 37.669 1 28.77 ? O1 6GG 201 A 1 HETATM 16 C C60 6GG . . . E 2 42.213 5.345 38.297 1 28.75 ? C60 6GG 201 A 1 HETATM 17 O O2 6GG . . . E 2 41.189 5.064 37.712 1 29.66 ? O2 6GG 201 A 1 HETATM 18 C C48 6GG . . . E 2 42.375 4.988 39.678 1 26.91 ? C48 6GG 201 A 1 HETATM 19 N N49 6GG . . . E 2 41.548 4.265 40.434 1 26.71 ? N49 6GG 201 A 1 HETATM 20 C C46 6GG . . . E 2 41.944 4.194 41.711 1 24.69 ? C46 6GG 201 A 1 HETATM 21 C C56 6GG . . . E 2 41.456 3.602 42.839 1 24.06 ? C56 6GG 201 A 1 HETATM 22 C C57 6GG . . . E 2 42.097 3.664 44.023 1 22.73 ? C57 6GG 201 A 1 HETATM 23 CL CL1 6GG . . . E 2 41.489 2.829 45.478 1 29.31 ? CL1 6GG 201 A 1 HETATM 24 C C44 6GG . . . E 2 43.445 5.5 40.527 1 26.51 ? C44 6GG 201 A 1 HETATM 25 C C45 6GG . . . E 2 43.203 4.957 41.85 1 24.15 ? C45 6GG 201 A 1 HETATM 26 C C59 6GG . . . E 2 43.831 5.011 43.058 1 23.65 ? C59 6GG 201 A 1 HETATM 27 C C58 6GG . . . E 2 43.291 4.399 44.156 1 25.12 ? C58 6GG 201 A 1 HETATM 28 C C14 6GG . . . E 2 44.684 6.312 40.279 1 31.9 ? C14 6GG 201 A 1 HETATM 29 N N13 6GG . . . E 2 45.734 5.844 39.642 1 33.28 ? N13 6GG 201 A 1 HETATM 30 C C5 6GG . . . E 2 45.874 4.555 38.93 1 34.73 ? C5 6GG 201 A 1 HETATM 31 C C6 6GG . . . E 2 45.788 3.33 39.831 1 35.28 ? C6 6GG 201 A 1 HETATM 32 C C7 6GG . . . E 2 45.247 2.14 39.314 1 36.46 ? C7 6GG 201 A 1 HETATM 33 C C8 6GG . . . E 2 45.15 1.026 40.136 1 32.78 ? C8 6GG 201 A 1 HETATM 34 C C9 6GG . . . E 2 45.591 1.101 41.409 1 33.24 ? C9 6GG 201 A 1 HETATM 35 CL CL2 6GG . . . E 2 45.529 -0.285 42.477 1 34.15 ? CL2 6GG 201 A 1 HETATM 36 C C10 6GG . . . E 2 46.115 2.261 41.973 1 35.96 ? C10 6GG 201 A 1 HETATM 37 C C11 6GG . . . E 2 46.236 3.392 41.15 1 37.83 ? C11 6GG 201 A 1 HETATM 38 C C18 6GG . . . E 2 46.688 6.804 39.729 1 33.29 ? C18 6GG 201 A 1 HETATM 39 N N16 6GG . . . E 2 46.283 7.864 40.466 1 34.43 ? N16 6GG 201 A 1 HETATM 40 C C15 6GG . . . E 2 45.009 7.627 40.877 1 32.59 ? C15 6GG 201 A 1 HETATM 41 C C37 6GG . . . E 2 44.198 8.605 41.59 1 27.92 ? C37 6GG 201 A 1 HETATM 42 C C38 6GG . . . E 2 42.858 8.683 41.337 1 28.97 ? C38 6GG 201 A 1 HETATM 43 C C39 6GG . . . E 2 42.094 9.683 41.937 1 28.65 ? C39 6GG 201 A 1 HETATM 44 C C40 6GG . . . E 2 42.717 10.607 42.777 1 31.29 ? C40 6GG 201 A 1 HETATM 45 F F 6GG . . . E 2 41.982 11.546 43.397 1 35.67 ? F 6GG 201 A 1 HETATM 46 C C41 6GG . . . E 2 44.073 10.536 43.035 1 28.12 ? C41 6GG 201 A 1 HETATM 47 C C42 6GG . . . E 2 44.808 9.571 42.373 1 28.8 ? C42 6GG 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #