data_5J7Q # _model_server_result.job_id EPH4hy-I50Ng0AdNgNsqLg _model_server_result.datetime_utc '2024-11-25 17:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":205}' # _entry.id 5J7Q # _exptl.entry_id 5J7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J7Q _cell.length_a 67.699 _cell.length_b 67.732 _cell.length_c 88.152 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 5J7Q _atom_sites.fract_transf_matrix[1][1] 0.014771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 6H2 A 1 201 116 6H2 MIF . E 3 SO4 A 1 202 124 SO4 SO4 . F 3 SO4 A 1 203 131 SO4 SO4 . G 3 SO4 B 1 201 121 SO4 SO4 . H 3 SO4 B 1 202 123 SO4 SO4 . I 4 GOL B 1 203 142 GOL GOL . J 3 SO4 C 1 201 122 SO4 SO4 . K 3 SO4 C 1 202 125 SO4 SO4 . L 3 SO4 C 1 203 126 SO4 SO4 . M 5 IPA C 1 204 136 IPA IPA . N 4 GOL C 1 205 141 GOL GOL . O 6 HOH A 1 301 9 HOH HOH . O 6 HOH A 2 302 30 HOH HOH . O 6 HOH A 3 303 20 HOH HOH . O 6 HOH A 4 304 6 HOH HOH . O 6 HOH A 5 305 3 HOH HOH . O 6 HOH A 6 306 33 HOH HOH . O 6 HOH A 7 307 15 HOH HOH . O 6 HOH A 8 308 19 HOH HOH . O 6 HOH A 9 309 53 HOH HOH . O 6 HOH A 10 310 35 HOH HOH . O 6 HOH A 11 311 39 HOH HOH . O 6 HOH A 12 312 1 HOH HOH . O 6 HOH A 13 313 48 HOH HOH . O 6 HOH A 14 314 61 HOH HOH . O 6 HOH A 15 315 65 HOH HOH . O 6 HOH A 16 316 68 HOH HOH . O 6 HOH A 17 317 71 HOH HOH . O 6 HOH A 18 318 56 HOH HOH . O 6 HOH A 19 319 72 HOH HOH . P 6 HOH B 1 301 46 HOH HOH . P 6 HOH B 2 302 24 HOH HOH . P 6 HOH B 3 303 13 HOH HOH . P 6 HOH B 4 304 14 HOH HOH . P 6 HOH B 5 305 73 HOH HOH . P 6 HOH B 6 306 5 HOH HOH . P 6 HOH B 7 307 55 HOH HOH . P 6 HOH B 8 308 49 HOH HOH . P 6 HOH B 9 309 11 HOH HOH . P 6 HOH B 10 310 31 HOH HOH . P 6 HOH B 11 311 25 HOH HOH . P 6 HOH B 12 312 47 HOH HOH . P 6 HOH B 13 313 28 HOH HOH . P 6 HOH B 14 314 2 HOH HOH . P 6 HOH B 15 315 51 HOH HOH . P 6 HOH B 16 316 50 HOH HOH . P 6 HOH B 17 317 41 HOH HOH . P 6 HOH B 18 318 8 HOH HOH . P 6 HOH B 19 319 45 HOH HOH . P 6 HOH B 20 320 52 HOH HOH . P 6 HOH B 21 321 26 HOH HOH . P 6 HOH B 22 322 70 HOH HOH . P 6 HOH B 23 323 64 HOH HOH . P 6 HOH B 24 324 54 HOH HOH . P 6 HOH B 25 325 62 HOH HOH . P 6 HOH B 26 326 44 HOH HOH . P 6 HOH B 27 327 57 HOH HOH . Q 6 HOH C 1 301 16 HOH HOH . Q 6 HOH C 2 302 18 HOH HOH . Q 6 HOH C 3 303 21 HOH HOH . Q 6 HOH C 4 304 59 HOH HOH . Q 6 HOH C 5 305 43 HOH HOH . Q 6 HOH C 6 306 29 HOH HOH . Q 6 HOH C 7 307 67 HOH HOH . Q 6 HOH C 8 308 10 HOH HOH . Q 6 HOH C 9 309 37 HOH HOH . Q 6 HOH C 10 310 12 HOH HOH . Q 6 HOH C 11 311 23 HOH HOH . Q 6 HOH C 12 312 4 HOH HOH . Q 6 HOH C 13 313 66 HOH HOH . Q 6 HOH C 14 314 17 HOH HOH . Q 6 HOH C 15 315 34 HOH HOH . Q 6 HOH C 16 316 22 HOH HOH . Q 6 HOH C 17 317 7 HOH HOH . Q 6 HOH C 18 318 36 HOH HOH . Q 6 HOH C 19 319 63 HOH HOH . Q 6 HOH C 20 320 58 HOH HOH . Q 6 HOH C 21 321 69 HOH HOH . Q 6 HOH C 22 322 40 HOH HOH . Q 6 HOH C 23 323 38 HOH HOH . Q 6 HOH C 24 324 32 HOH HOH . Q 6 HOH C 25 325 60 HOH HOH . Q 6 HOH C 26 326 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 4 -11.4 10.484 -3.833 1 38.1 ? C1 GOL 205 C 1 HETATM 2 O O1 GOL . . . N 4 -10.089 9.925 -4.094 1 44.32 ? O1 GOL 205 C 1 HETATM 3 C C2 GOL . . . N 4 -12.434 9.566 -4.486 1 39.83 ? C2 GOL 205 C 1 HETATM 4 O O2 GOL . . . N 4 -13.2 9.016 -3.429 1 38.18 ? O2 GOL 205 C 1 HETATM 5 C C3 GOL . . . N 4 -13.376 10.228 -5.496 1 39.26 ? C3 GOL 205 C 1 HETATM 6 O O3 GOL . . . N 4 -14.725 9.896 -5.141 1 33.06 ? O3 GOL 205 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #