data_5J7R # _model_server_result.job_id isC3WDfiCh_8MHJ0YhmXGQ _model_server_result.datetime_utc '2024-10-10 07:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 5J7R # _exptl.entry_id 5J7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J7R _cell.length_a 118.212 _cell.length_b 118.212 _cell.length_c 71.836 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,I,K 1 1,2 A,E,I 2 1,2 B,D,F,G,H,J,L 3 1,3 B,F,G,H,J 4 1,3 C,D,K,L 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 71.836 3 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 50 A ASP 70 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? covale ? covale1 A C ASN 104 A ASN 124 1_555 A N MSE 105 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 105 A MSE 125 1_555 A N SER 106 A SER 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C GLN 137 A GLN 157 1_555 A N MSE 138 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 138 A MSE 158 1_555 A N VAL 139 A VAL 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc2 B OD2 ASP 50 B ASP 70 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? covale ? covale5 B C ASN 104 B ASN 124 1_555 B N MSE 105 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C MSE 105 B MSE 125 1_555 B N SER 106 B SER 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C GLN 137 B GLN 157 1_555 B N MSE 138 B MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MSE 138 B MSE 158 1_555 B N VAL 139 B VAL 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 C C ASN 104 C ASN 124 1_555 C N MSE 105 C MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 C C MSE 105 C MSE 125 1_555 C N SER 106 C SER 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 C C GLN 137 C GLN 157 1_555 C N MSE 138 C MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 C C MSE 138 C MSE 158 1_555 C N VAL 139 C VAL 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 D C ASN 104 D ASN 124 1_555 D N MSE 105 D MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 D C MSE 105 D MSE 125 1_555 D N SER 106 D SER 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 D C GLN 137 D GLN 157 1_555 D N MSE 138 D MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 D C MSE 138 D MSE 158 1_555 D N VAL 139 D VAL 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc3 E MG MG . A MG 201 1_555 K O HOH . C HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 E MG MG . A MG 201 1_555 K O HOH . C HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc5 E MG MG . A MG 201 1_555 L O HOH . D HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 E MG MG . A MG 201 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 E MG MG . A MG 201 1_555 I O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc8 G MG MG . B MG 202 1_555 J O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 G MG MG . B MG 202 1_555 J O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 G MG MG . B MG 202 1_555 J O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5J7R _atom_sites.fract_transf_matrix[1][1] 0.008459 _atom_sites.fract_transf_matrix[1][2] 0.004884 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 201 3 MG MG . F 3 CL B 1 201 1 CL CL . G 2 MG B 1 202 2 MG MG . H 4 PEG B 1 203 4 PEG PEG . I 5 HOH A 1 301 30 HOH HOH . I 5 HOH A 2 302 31 HOH HOH . I 5 HOH A 3 303 25 HOH HOH . I 5 HOH A 4 304 83 HOH HOH . I 5 HOH A 5 305 42 HOH HOH . I 5 HOH A 6 306 5 HOH HOH . I 5 HOH A 7 307 16 HOH HOH . I 5 HOH A 8 308 61 HOH HOH . I 5 HOH A 9 309 22 HOH HOH . I 5 HOH A 10 310 36 HOH HOH . I 5 HOH A 11 311 41 HOH HOH . I 5 HOH A 12 312 35 HOH HOH . I 5 HOH A 13 313 21 HOH HOH . I 5 HOH A 14 314 77 HOH HOH . I 5 HOH A 15 315 60 HOH HOH . I 5 HOH A 16 316 67 HOH HOH . I 5 HOH A 17 317 81 HOH HOH . I 5 HOH A 18 318 6 HOH HOH . I 5 HOH A 19 319 57 HOH HOH . I 5 HOH A 20 320 18 HOH HOH . I 5 HOH A 21 321 66 HOH HOH . I 5 HOH A 22 322 59 HOH HOH . I 5 HOH A 23 323 65 HOH HOH . I 5 HOH A 24 324 73 HOH HOH . I 5 HOH A 25 325 39 HOH HOH . I 5 HOH A 26 326 58 HOH HOH . J 5 HOH B 1 301 80 HOH HOH . J 5 HOH B 2 302 50 HOH HOH . J 5 HOH B 3 303 19 HOH HOH . J 5 HOH B 4 304 32 HOH HOH . J 5 HOH B 5 305 79 HOH HOH . J 5 HOH B 6 306 13 HOH HOH . J 5 HOH B 7 307 12 HOH HOH . J 5 HOH B 8 308 38 HOH HOH . J 5 HOH B 9 309 74 HOH HOH . J 5 HOH B 10 310 45 HOH HOH . J 5 HOH B 11 311 49 HOH HOH . J 5 HOH B 12 312 48 HOH HOH . J 5 HOH B 13 313 14 HOH HOH . J 5 HOH B 14 314 23 HOH HOH . J 5 HOH B 15 315 43 HOH HOH . J 5 HOH B 16 316 8 HOH HOH . J 5 HOH B 17 317 55 HOH HOH . J 5 HOH B 18 318 20 HOH HOH . J 5 HOH B 19 319 75 HOH HOH . J 5 HOH B 20 320 68 HOH HOH . J 5 HOH B 21 321 27 HOH HOH . J 5 HOH B 22 322 62 HOH HOH . J 5 HOH B 23 323 40 HOH HOH . J 5 HOH B 24 324 51 HOH HOH . J 5 HOH B 25 325 69 HOH HOH . K 5 HOH C 1 201 52 HOH HOH . K 5 HOH C 2 202 33 HOH HOH . K 5 HOH C 3 203 7 HOH HOH . K 5 HOH C 4 204 34 HOH HOH . K 5 HOH C 5 205 9 HOH HOH . K 5 HOH C 6 206 76 HOH HOH . K 5 HOH C 7 207 29 HOH HOH . K 5 HOH C 8 208 78 HOH HOH . K 5 HOH C 9 209 63 HOH HOH . K 5 HOH C 10 210 70 HOH HOH . K 5 HOH C 11 211 47 HOH HOH . K 5 HOH C 12 212 44 HOH HOH . K 5 HOH C 13 213 53 HOH HOH . K 5 HOH C 14 214 82 HOH HOH . L 5 HOH D 1 201 10 HOH HOH . L 5 HOH D 2 202 46 HOH HOH . L 5 HOH D 3 203 85 HOH HOH . L 5 HOH D 4 204 37 HOH HOH . L 5 HOH D 5 205 26 HOH HOH . L 5 HOH D 6 206 28 HOH HOH . L 5 HOH D 7 207 24 HOH HOH . L 5 HOH D 8 208 17 HOH HOH . L 5 HOH D 9 209 64 HOH HOH . L 5 HOH D 10 210 84 HOH HOH . L 5 HOH D 11 211 15 HOH HOH . L 5 HOH D 12 212 11 HOH HOH . L 5 HOH D 13 213 72 HOH HOH . L 5 HOH D 14 214 71 HOH HOH . L 5 HOH D 15 215 54 HOH HOH . L 5 HOH D 16 216 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 4 11.093 37.312 -4.925 1 81.32 ? C1 PEG 203 B 1 HETATM 2 O O1 PEG . . . H 4 10.033 37.012 -4.01 1 88.79 ? O1 PEG 203 B 1 HETATM 3 C C2 PEG . . . H 4 12.43 36.886 -4.33 1 81.43 ? C2 PEG 203 B 1 HETATM 4 O O2 PEG . . . H 4 12.716 35.522 -4.639 1 86.13 ? O2 PEG 203 B 1 HETATM 5 C C3 PEG . . . H 4 13.954 35.038 -4.107 1 75.18 ? C3 PEG 203 B 1 HETATM 6 C C4 PEG . . . H 4 13.759 34.553 -2.671 1 80.5 ? C4 PEG 203 B 1 HETATM 7 O O4 PEG . . . H 4 13.927 33.134 -2.593 1 78.4 ? O4 PEG 203 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #