data_5J7W
#
_model_server_result.job_id            bH2cRqi-ET-jM19cGlvzmQ 
_model_server_result.datetime_utc      '2024-11-20 17:26:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    5J7W 
#
_exptl.entry_id    5J7W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.14 
_cell.angle_gamma         90 
_cell.entry_id            5J7W 
_cell.length_a            72.227 
_cell.length_b            94.144 
_cell.length_c            96.293 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,I,J,K,N 1 1 
B,C,F,G,H,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     5J7W 
_atom_sites.fract_transf_matrix[1][1]    0.013845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 401 3 SO4 SO4 . 
F 2 SO4 B 1 401 4 SO4 SO4 . 
G 2 SO4 C 1 401 1 SO4 SO4 . 
H 3 MTX C 1 402 1 MTX MTX . 
I 2 SO4 D 1 401 2 SO4 SO4 . 
J 3 MTX D 1 402 1 MTX MTX . 
K 4 HOH A 1 501 137 HOH HOH . 
K 4 HOH A 2 502 57 HOH HOH . 
K 4 HOH A 3 503 129 HOH HOH . 
K 4 HOH A 4 504 108 HOH HOH . 
K 4 HOH A 5 505 87 HOH HOH . 
K 4 HOH A 6 506 25 HOH HOH . 
K 4 HOH A 7 507 120 HOH HOH . 
K 4 HOH A 8 508 45 HOH HOH . 
K 4 HOH A 9 509 74 HOH HOH . 
K 4 HOH A 10 510 172 HOH HOH . 
K 4 HOH A 11 511 73 HOH HOH . 
K 4 HOH A 12 512 32 HOH HOH . 
K 4 HOH A 13 513 28 HOH HOH . 
K 4 HOH A 14 514 7 HOH HOH . 
K 4 HOH A 15 515 44 HOH HOH . 
K 4 HOH A 16 516 4 HOH HOH . 
K 4 HOH A 17 517 118 HOH HOH . 
K 4 HOH A 18 518 46 HOH HOH . 
K 4 HOH A 19 519 79 HOH HOH . 
K 4 HOH A 20 520 24 HOH HOH . 
K 4 HOH A 21 521 97 HOH HOH . 
K 4 HOH A 22 522 133 HOH HOH . 
K 4 HOH A 23 523 170 HOH HOH . 
K 4 HOH A 24 524 157 HOH HOH . 
K 4 HOH A 25 525 104 HOH HOH . 
K 4 HOH A 26 526 114 HOH HOH . 
K 4 HOH A 27 527 83 HOH HOH . 
K 4 HOH A 28 528 150 HOH HOH . 
K 4 HOH A 29 529 91 HOH HOH . 
K 4 HOH A 30 530 69 HOH HOH . 
K 4 HOH A 31 531 84 HOH HOH . 
K 4 HOH A 32 532 30 HOH HOH . 
K 4 HOH A 33 533 132 HOH HOH . 
K 4 HOH A 34 534 175 HOH HOH . 
K 4 HOH A 35 535 123 HOH HOH . 
L 4 HOH B 1 501 94 HOH HOH . 
L 4 HOH B 2 502 151 HOH HOH . 
L 4 HOH B 3 503 20 HOH HOH . 
L 4 HOH B 4 504 43 HOH HOH . 
L 4 HOH B 5 505 68 HOH HOH . 
L 4 HOH B 6 506 179 HOH HOH . 
L 4 HOH B 7 507 19 HOH HOH . 
L 4 HOH B 8 508 56 HOH HOH . 
L 4 HOH B 9 509 80 HOH HOH . 
L 4 HOH B 10 510 167 HOH HOH . 
L 4 HOH B 11 511 15 HOH HOH . 
L 4 HOH B 12 512 90 HOH HOH . 
L 4 HOH B 13 513 66 HOH HOH . 
L 4 HOH B 14 514 27 HOH HOH . 
L 4 HOH B 15 515 41 HOH HOH . 
L 4 HOH B 16 516 93 HOH HOH . 
L 4 HOH B 17 517 54 HOH HOH . 
L 4 HOH B 18 518 149 HOH HOH . 
L 4 HOH B 19 519 154 HOH HOH . 
L 4 HOH B 20 520 100 HOH HOH . 
L 4 HOH B 21 521 124 HOH HOH . 
L 4 HOH B 22 522 9 HOH HOH . 
L 4 HOH B 23 523 77 HOH HOH . 
L 4 HOH B 24 524 60 HOH HOH . 
L 4 HOH B 25 525 102 HOH HOH . 
L 4 HOH B 26 526 115 HOH HOH . 
L 4 HOH B 27 527 121 HOH HOH . 
L 4 HOH B 28 528 131 HOH HOH . 
L 4 HOH B 29 529 166 HOH HOH . 
L 4 HOH B 30 530 119 HOH HOH . 
L 4 HOH B 31 531 78 HOH HOH . 
L 4 HOH B 32 532 173 HOH HOH . 
L 4 HOH B 33 533 35 HOH HOH . 
L 4 HOH B 34 534 145 HOH HOH . 
L 4 HOH B 35 535 159 HOH HOH . 
L 4 HOH B 36 536 86 HOH HOH . 
L 4 HOH B 37 537 62 HOH HOH . 
L 4 HOH B 38 538 59 HOH HOH . 
L 4 HOH B 39 539 138 HOH HOH . 
L 4 HOH B 40 540 55 HOH HOH . 
L 4 HOH B 41 541 164 HOH HOH . 
L 4 HOH B 42 542 178 HOH HOH . 
M 4 HOH C 1 501 38 HOH HOH . 
M 4 HOH C 2 502 64 HOH HOH . 
M 4 HOH C 3 503 176 HOH HOH . 
M 4 HOH C 4 504 95 HOH HOH . 
M 4 HOH C 5 505 1 HOH HOH . 
M 4 HOH C 6 506 76 HOH HOH . 
M 4 HOH C 7 507 142 HOH HOH . 
M 4 HOH C 8 508 92 HOH HOH . 
M 4 HOH C 9 509 99 HOH HOH . 
M 4 HOH C 10 510 49 HOH HOH . 
M 4 HOH C 11 511 36 HOH HOH . 
M 4 HOH C 12 512 67 HOH HOH . 
M 4 HOH C 13 513 146 HOH HOH . 
M 4 HOH C 14 514 33 HOH HOH . 
M 4 HOH C 15 515 82 HOH HOH . 
M 4 HOH C 16 516 14 HOH HOH . 
M 4 HOH C 17 517 88 HOH HOH . 
M 4 HOH C 18 518 112 HOH HOH . 
M 4 HOH C 19 519 171 HOH HOH . 
M 4 HOH C 20 520 116 HOH HOH . 
M 4 HOH C 21 521 8 HOH HOH . 
M 4 HOH C 22 522 144 HOH HOH . 
M 4 HOH C 23 523 47 HOH HOH . 
M 4 HOH C 24 524 58 HOH HOH . 
M 4 HOH C 25 525 12 HOH HOH . 
M 4 HOH C 26 526 103 HOH HOH . 
M 4 HOH C 27 527 155 HOH HOH . 
M 4 HOH C 28 528 42 HOH HOH . 
M 4 HOH C 29 529 169 HOH HOH . 
M 4 HOH C 30 530 135 HOH HOH . 
M 4 HOH C 31 531 18 HOH HOH . 
M 4 HOH C 32 532 98 HOH HOH . 
M 4 HOH C 33 533 63 HOH HOH . 
M 4 HOH C 34 534 39 HOH HOH . 
M 4 HOH C 35 535 161 HOH HOH . 
M 4 HOH C 36 536 29 HOH HOH . 
M 4 HOH C 37 537 21 HOH HOH . 
M 4 HOH C 38 538 109 HOH HOH . 
M 4 HOH C 39 539 110 HOH HOH . 
M 4 HOH C 40 540 136 HOH HOH . 
M 4 HOH C 41 541 13 HOH HOH . 
M 4 HOH C 42 542 105 HOH HOH . 
M 4 HOH C 43 543 147 HOH HOH . 
M 4 HOH C 44 544 81 HOH HOH . 
M 4 HOH C 45 545 31 HOH HOH . 
M 4 HOH C 46 546 128 HOH HOH . 
M 4 HOH C 47 547 65 HOH HOH . 
M 4 HOH C 48 548 107 HOH HOH . 
M 4 HOH C 49 549 165 HOH HOH . 
M 4 HOH C 50 550 101 HOH HOH . 
M 4 HOH C 51 551 174 HOH HOH . 
N 4 HOH D 1 501 51 HOH HOH . 
N 4 HOH D 2 502 126 HOH HOH . 
N 4 HOH D 3 503 89 HOH HOH . 
N 4 HOH D 4 504 34 HOH HOH . 
N 4 HOH D 5 505 53 HOH HOH . 
N 4 HOH D 6 506 111 HOH HOH . 
N 4 HOH D 7 507 140 HOH HOH . 
N 4 HOH D 8 508 156 HOH HOH . 
N 4 HOH D 9 509 153 HOH HOH . 
N 4 HOH D 10 510 152 HOH HOH . 
N 4 HOH D 11 511 6 HOH HOH . 
N 4 HOH D 12 512 50 HOH HOH . 
N 4 HOH D 13 513 113 HOH HOH . 
N 4 HOH D 14 514 70 HOH HOH . 
N 4 HOH D 15 515 17 HOH HOH . 
N 4 HOH D 16 516 23 HOH HOH . 
N 4 HOH D 17 517 61 HOH HOH . 
N 4 HOH D 18 518 11 HOH HOH . 
N 4 HOH D 19 519 96 HOH HOH . 
N 4 HOH D 20 520 134 HOH HOH . 
N 4 HOH D 21 521 16 HOH HOH . 
N 4 HOH D 22 522 5 HOH HOH . 
N 4 HOH D 23 523 125 HOH HOH . 
N 4 HOH D 24 524 148 HOH HOH . 
N 4 HOH D 25 525 163 HOH HOH . 
N 4 HOH D 26 526 10 HOH HOH . 
N 4 HOH D 27 527 72 HOH HOH . 
N 4 HOH D 28 528 40 HOH HOH . 
N 4 HOH D 29 529 22 HOH HOH . 
N 4 HOH D 30 530 143 HOH HOH . 
N 4 HOH D 31 531 139 HOH HOH . 
N 4 HOH D 32 532 141 HOH HOH . 
N 4 HOH D 33 533 162 HOH HOH . 
N 4 HOH D 34 534 2 HOH HOH . 
N 4 HOH D 35 535 127 HOH HOH . 
N 4 HOH D 36 536 130 HOH HOH . 
N 4 HOH D 37 537 37 HOH HOH . 
N 4 HOH D 38 538 48 HOH HOH . 
N 4 HOH D 39 539 52 HOH HOH . 
N 4 HOH D 40 540 122 HOH HOH . 
N 4 HOH D 41 541 71 HOH HOH . 
N 4 HOH D 42 542 3 HOH HOH . 
N 4 HOH D 43 543 85 HOH HOH . 
N 4 HOH D 44 544 26 HOH HOH . 
N 4 HOH D 45 545 158 HOH HOH . 
N 4 HOH D 46 546 75 HOH HOH . 
N 4 HOH D 47 547 168 HOH HOH . 
N 4 HOH D 48 548 160 HOH HOH . 
N 4 HOH D 49 549 106 HOH HOH . 
N 4 HOH D 50 550 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . H 3 -13.364 -18.038 15.764 1 12.28 ? N1 MTX 402 C 1 
HETATM 2 C C2 MTX . . . H 3 -13.095 -16.889 16.505 1 11.81 ? C2 MTX 402 C 1 
HETATM 3 N NA2 MTX . . . H 3 -12.96 -15.71 15.949 1 12.01 ? NA2 MTX 402 C 1 
HETATM 4 N N3 MTX . . . H 3 -12.929 -16.909 17.852 1 11.97 ? N3 MTX 402 C 1 
HETATM 5 C C4 MTX . . . H 3 -13.02 -18.097 18.492 1 12.18 ? C4 MTX 402 C 1 
HETATM 6 N NA4 MTX . . . H 3 -12.875 -18.23 19.798 1 12.09 ? NA4 MTX 402 C 1 
HETATM 7 C C4A MTX . . . H 3 -13.273 -19.215 17.758 1 12.51 ? C4A MTX 402 C 1 
HETATM 8 N N5 MTX . . . H 3 -13.365 -20.326 18.494 1 13.25 ? N5 MTX 402 C 1 
HETATM 9 C C6 MTX . . . H 3 -13.573 -21.514 17.886 1 13.06 ? C6 MTX 402 C 1 
HETATM 10 C C7 MTX . . . H 3 -13.803 -21.672 16.515 1 12.52 ? C7 MTX 402 C 1 
HETATM 11 N N8 MTX . . . H 3 -13.714 -20.493 15.775 1 12.09 ? N8 MTX 402 C 1 
HETATM 12 C C8A MTX . . . H 3 -13.454 -19.263 16.394 1 12.12 ? C8A MTX 402 C 1 
HETATM 13 C C9 MTX . . . H 3 -13.718 -22.425 19.007 1 13.23 ? C9 MTX 402 C 1 
HETATM 14 N N10 MTX . . . H 3 -15.176 -22.094 19.181 1 12.93 ? N10 MTX 402 C 1 
HETATM 15 C CM MTX . . . H 3 -16.026 -23.174 18.675 1 13.63 ? CM MTX 402 C 1 
HETATM 16 C C11 MTX . . . H 3 -17.922 -19.256 21.012 1 11.91 ? C11 MTX 402 C 1 
HETATM 17 C C12 MTX . . . H 3 -17.126 -20.108 21.802 1 12.21 ? C12 MTX 402 C 1 
HETATM 18 C C13 MTX . . . H 3 -16.229 -21.039 21.227 1 12.34 ? C13 MTX 402 C 1 
HETATM 19 C C14 MTX . . . H 3 -16.018 -21.105 19.837 1 12.43 ? C14 MTX 402 C 1 
HETATM 20 C C15 MTX . . . H 3 -16.856 -20.289 19.059 1 12.32 ? C15 MTX 402 C 1 
HETATM 21 C C16 MTX . . . H 3 -17.772 -19.376 19.623 1 11.84 ? C16 MTX 402 C 1 
HETATM 22 C C MTX . . . H 3 -18.961 -18.289 21.572 1 11.86 ? C MTX 402 C 1 
HETATM 23 O O MTX . . . H 3 -19.707 -17.53 20.66 1 11.95 ? O MTX 402 C 1 
HETATM 24 N N MTX . . . H 3 -19.31 -18.138 22.857 1 12.43 ? N MTX 402 C 1 
HETATM 25 C CA MTX . . . H 3 -20.388 -17.177 23.307 1 13 ? CA MTX 402 C 1 
HETATM 26 C CT MTX . . . H 3 -20.257 -16.617 24.729 1 12.88 ? CT MTX 402 C 1 
HETATM 27 O O1 MTX . . . H 3 -20.864 -15.59 25.142 1 12.49 ? O1 MTX 402 C 1 
HETATM 28 O O2 MTX . . . H 3 -19.495 -17.162 25.551 1 13.44 ? O2 MTX 402 C 1 
HETATM 29 C CB MTX . . . H 3 -21.831 -17.701 23.048 1 12.96 ? CB MTX 402 C 1 
HETATM 30 C CG MTX . . . H 3 -22.494 -18.521 24.165 1 13.38 ? CG MTX 402 C 1 
HETATM 31 C CD MTX . . . H 3 -23.796 -19.151 23.68 1 13.71 ? CD MTX 402 C 1 
HETATM 32 O OE1 MTX . . . H 3 -24.883 -19.081 24.345 1 12.67 ? OE1 MTX 402 C 1 
HETATM 33 O OE2 MTX . . . H 3 -23.75 -19.756 22.562 1 14.18 ? OE2 MTX 402 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           426 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#