data_5J85 # _model_server_result.job_id eiSPFIkGpOx-krC0h5PVmg _model_server_result.datetime_utc '2024-12-09 00:43:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5J85 # _exptl.entry_id 5J85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation S480A _entity.pdbx_fragment ? _entity.pdbx_ec 4.2.1.25 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J85 _cell.length_a 318.44 _cell.length_b 318.44 _cell.length_c 318.44 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 3 'crystal symmetry operation' 28_544 x,-y-1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -159.22 -159.22 4 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -159.22 -159.22 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 59 1_555 A SG CYS 136 A CYS 127 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C ASP 137 A ASP 128 1_555 A N KCX 138 A KCX 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C KCX 138 A KCX 129 1_555 A N THR 139 A THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A SG CYS 68 A CYS 59 1_555 B FE1 FES . A FES 601 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A OE1 GLU 100 A GLU 91 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 136 A CYS 127 1_555 B FE1 FES . A FES 601 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OD2 ASP 137 A ASP 128 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OQ1 KCX 138 A KCX 129 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 A SG CYS 209 A CYS 200 1_555 B FE2 FES . A FES 601 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 A OE1 GLU 462 A GLU 453 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 5J85 _atom_sites.fract_transf_matrix[1][1] 0.00314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 601 700 FES FES . C 3 MG A 1 602 800 MG MG . D 4 HOH A 1 701 193 HOH HOH . D 4 HOH A 2 702 219 HOH HOH . D 4 HOH A 3 703 63 HOH HOH . D 4 HOH A 4 704 222 HOH HOH . D 4 HOH A 5 705 233 HOH HOH . D 4 HOH A 6 706 64 HOH HOH . D 4 HOH A 7 707 43 HOH HOH . D 4 HOH A 8 708 134 HOH HOH . D 4 HOH A 9 709 206 HOH HOH . D 4 HOH A 10 710 132 HOH HOH . D 4 HOH A 11 711 7 HOH HOH . D 4 HOH A 12 712 163 HOH HOH . D 4 HOH A 13 713 25 HOH HOH . D 4 HOH A 14 714 11 HOH HOH . D 4 HOH A 15 715 207 HOH HOH . D 4 HOH A 16 716 175 HOH HOH . D 4 HOH A 17 717 142 HOH HOH . D 4 HOH A 18 718 2 HOH HOH . D 4 HOH A 19 719 96 HOH HOH . D 4 HOH A 20 720 56 HOH HOH . D 4 HOH A 21 721 95 HOH HOH . D 4 HOH A 22 722 27 HOH HOH . D 4 HOH A 23 723 67 HOH HOH . D 4 HOH A 24 724 97 HOH HOH . D 4 HOH A 25 725 86 HOH HOH . D 4 HOH A 26 726 71 HOH HOH . D 4 HOH A 27 727 29 HOH HOH . D 4 HOH A 28 728 128 HOH HOH . D 4 HOH A 29 729 209 HOH HOH . D 4 HOH A 30 730 141 HOH HOH . D 4 HOH A 31 731 48 HOH HOH . D 4 HOH A 32 732 1 HOH HOH . D 4 HOH A 33 733 3 HOH HOH . D 4 HOH A 34 734 124 HOH HOH . D 4 HOH A 35 735 16 HOH HOH . D 4 HOH A 36 736 31 HOH HOH . D 4 HOH A 37 737 101 HOH HOH . D 4 HOH A 38 738 220 HOH HOH . D 4 HOH A 39 739 131 HOH HOH . D 4 HOH A 40 740 81 HOH HOH . D 4 HOH A 41 741 6 HOH HOH . D 4 HOH A 42 742 72 HOH HOH . D 4 HOH A 43 743 19 HOH HOH . D 4 HOH A 44 744 159 HOH HOH . D 4 HOH A 45 745 61 HOH HOH . D 4 HOH A 46 746 15 HOH HOH . D 4 HOH A 47 747 20 HOH HOH . D 4 HOH A 48 748 129 HOH HOH . D 4 HOH A 49 749 14 HOH HOH . D 4 HOH A 50 750 54 HOH HOH . D 4 HOH A 51 751 185 HOH HOH . D 4 HOH A 52 752 83 HOH HOH . D 4 HOH A 53 753 108 HOH HOH . D 4 HOH A 54 754 208 HOH HOH . D 4 HOH A 55 755 62 HOH HOH . D 4 HOH A 56 756 103 HOH HOH . D 4 HOH A 57 757 117 HOH HOH . D 4 HOH A 58 758 230 HOH HOH . D 4 HOH A 59 759 65 HOH HOH . D 4 HOH A 60 760 41 HOH HOH . D 4 HOH A 61 761 137 HOH HOH . D 4 HOH A 62 762 42 HOH HOH . D 4 HOH A 63 763 199 HOH HOH . D 4 HOH A 64 764 8 HOH HOH . D 4 HOH A 65 765 68 HOH HOH . D 4 HOH A 66 766 66 HOH HOH . D 4 HOH A 67 767 154 HOH HOH . D 4 HOH A 68 768 133 HOH HOH . D 4 HOH A 69 769 12 HOH HOH . D 4 HOH A 70 770 194 HOH HOH . D 4 HOH A 71 771 182 HOH HOH . D 4 HOH A 72 772 214 HOH HOH . D 4 HOH A 73 773 33 HOH HOH . D 4 HOH A 74 774 50 HOH HOH . D 4 HOH A 75 775 156 HOH HOH . D 4 HOH A 76 776 205 HOH HOH . D 4 HOH A 77 777 5 HOH HOH . D 4 HOH A 78 778 106 HOH HOH . D 4 HOH A 79 779 168 HOH HOH . D 4 HOH A 80 780 39 HOH HOH . D 4 HOH A 81 781 144 HOH HOH . D 4 HOH A 82 782 173 HOH HOH . D 4 HOH A 83 783 166 HOH HOH . D 4 HOH A 84 784 59 HOH HOH . D 4 HOH A 85 785 198 HOH HOH . D 4 HOH A 86 786 119 HOH HOH . D 4 HOH A 87 787 143 HOH HOH . D 4 HOH A 88 788 80 HOH HOH . D 4 HOH A 89 789 4 HOH HOH . D 4 HOH A 90 790 74 HOH HOH . D 4 HOH A 91 791 38 HOH HOH . D 4 HOH A 92 792 55 HOH HOH . D 4 HOH A 93 793 70 HOH HOH . D 4 HOH A 94 794 177 HOH HOH . D 4 HOH A 95 795 49 HOH HOH . D 4 HOH A 96 796 58 HOH HOH . D 4 HOH A 97 797 146 HOH HOH . D 4 HOH A 98 798 125 HOH HOH . D 4 HOH A 99 799 192 HOH HOH . D 4 HOH A 100 800 21 HOH HOH . D 4 HOH A 101 801 169 HOH HOH . D 4 HOH A 102 802 126 HOH HOH . D 4 HOH A 103 803 35 HOH HOH . D 4 HOH A 104 804 34 HOH HOH . D 4 HOH A 105 805 91 HOH HOH . D 4 HOH A 106 806 179 HOH HOH . D 4 HOH A 107 807 180 HOH HOH . D 4 HOH A 108 808 30 HOH HOH . D 4 HOH A 109 809 213 HOH HOH . D 4 HOH A 110 810 37 HOH HOH . D 4 HOH A 111 811 22 HOH HOH . D 4 HOH A 112 812 200 HOH HOH . D 4 HOH A 113 813 99 HOH HOH . D 4 HOH A 114 814 111 HOH HOH . D 4 HOH A 115 815 10 HOH HOH . D 4 HOH A 116 816 174 HOH HOH . D 4 HOH A 117 817 112 HOH HOH . D 4 HOH A 118 818 18 HOH HOH . D 4 HOH A 119 819 160 HOH HOH . D 4 HOH A 120 820 32 HOH HOH . D 4 HOH A 121 821 52 HOH HOH . D 4 HOH A 122 822 53 HOH HOH . D 4 HOH A 123 823 115 HOH HOH . D 4 HOH A 124 824 47 HOH HOH . D 4 HOH A 125 825 13 HOH HOH . D 4 HOH A 126 826 162 HOH HOH . D 4 HOH A 127 827 116 HOH HOH . D 4 HOH A 128 828 98 HOH HOH . D 4 HOH A 129 829 26 HOH HOH . D 4 HOH A 130 830 78 HOH HOH . D 4 HOH A 131 831 113 HOH HOH . D 4 HOH A 132 832 153 HOH HOH . D 4 HOH A 133 833 60 HOH HOH . D 4 HOH A 134 834 172 HOH HOH . D 4 HOH A 135 835 36 HOH HOH . D 4 HOH A 136 836 183 HOH HOH . D 4 HOH A 137 837 9 HOH HOH . D 4 HOH A 138 838 210 HOH HOH . D 4 HOH A 139 839 120 HOH HOH . D 4 HOH A 140 840 171 HOH HOH . D 4 HOH A 141 841 73 HOH HOH . D 4 HOH A 142 842 51 HOH HOH . D 4 HOH A 143 843 223 HOH HOH . D 4 HOH A 144 844 28 HOH HOH . D 4 HOH A 145 845 109 HOH HOH . D 4 HOH A 146 846 157 HOH HOH . D 4 HOH A 147 847 229 HOH HOH . D 4 HOH A 148 848 24 HOH HOH . D 4 HOH A 149 849 164 HOH HOH . D 4 HOH A 150 850 227 HOH HOH . D 4 HOH A 151 851 212 HOH HOH . D 4 HOH A 152 852 155 HOH HOH . D 4 HOH A 153 853 188 HOH HOH . D 4 HOH A 154 854 75 HOH HOH . D 4 HOH A 155 855 176 HOH HOH . D 4 HOH A 156 856 191 HOH HOH . D 4 HOH A 157 857 195 HOH HOH . D 4 HOH A 158 858 187 HOH HOH . D 4 HOH A 159 859 196 HOH HOH . D 4 HOH A 160 860 167 HOH HOH . D 4 HOH A 161 861 139 HOH HOH . D 4 HOH A 162 862 190 HOH HOH . D 4 HOH A 163 863 197 HOH HOH . D 4 HOH A 164 864 79 HOH HOH . D 4 HOH A 165 865 218 HOH HOH . D 4 HOH A 166 866 57 HOH HOH . D 4 HOH A 167 867 94 HOH HOH . D 4 HOH A 168 868 122 HOH HOH . D 4 HOH A 169 869 215 HOH HOH . D 4 HOH A 170 870 217 HOH HOH . D 4 HOH A 171 871 189 HOH HOH . D 4 HOH A 172 872 181 HOH HOH . D 4 HOH A 173 873 232 HOH HOH . D 4 HOH A 174 874 184 HOH HOH . D 4 HOH A 175 875 228 HOH HOH . D 4 HOH A 176 876 226 HOH HOH . D 4 HOH A 177 877 186 HOH HOH . D 4 HOH A 178 878 110 HOH HOH . D 4 HOH A 179 879 225 HOH HOH . D 4 HOH A 180 880 76 HOH HOH . D 4 HOH A 181 881 178 HOH HOH . D 4 HOH A 182 882 170 HOH HOH . D 4 HOH A 183 883 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 16.505 -65.817 -70.498 0.6 81.27 ? FE1 FES 601 A 1 HETATM 2 FE FE2 FES . . . B 2 19.385 -64.843 -70.13 0.6 95.82 ? FE2 FES 601 A 1 HETATM 3 S S1 FES . . . B 2 17.621 -64.038 -71.171 0.6 95.34 ? S1 FES 601 A 1 HETATM 4 S S2 FES . . . B 2 18.385 -66.795 -69.872 0.6 64.55 ? S2 FES 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #