data_5J86 # _model_server_result.job_id M9E9aV2VpshUSscxymS1Zw _model_server_result.datetime_utc '2024-10-31 07:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5J86 # _exptl.entry_id 5J86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.484 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-dihydroxy-N-methyl-5-[4-(2-methylphenyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl]-N-[(thiophen-2-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J86 _cell.length_a 67.078 _cell.length_b 90.24 _cell.length_c 98.089 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -67.078 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H20 N4 O4 S' _chem_comp.formula_weight 436.484 _chem_comp.id 6GW _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-dihydroxy-N-methyl-5-[4-(2-methylphenyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl]-N-[(thiophen-2-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C2 6GW sing 1 n n O23 C21 6GW doub 2 n n C2 C3 6GW doub 3 n y C2 C7 6GW sing 4 n y C21 C7 6GW sing 5 n n C21 N22 6GW sing 6 n n C3 C4 6GW sing 7 n y C24 N22 6GW sing 8 n n C24 C25 6GW sing 9 n n C7 C6 6GW doub 10 n y N22 C27 6GW sing 11 n n C26 C19 6GW doub 12 n y C26 C1 6GW sing 13 n y C19 C18 6GW sing 14 n y C4 O11 6GW sing 15 n n C4 C5 6GW doub 16 n y C1 C16 6GW doub 17 n y C18 C17 6GW doub 18 n y C25 C31 6GW doub 19 n y C25 S28 6GW sing 20 n y C6 C5 6GW sing 21 n y C31 C30 6GW sing 22 n y C5 C8 6GW sing 23 n n C16 C17 6GW sing 24 n y C16 N10 6GW sing 25 n n C17 C20 6GW sing 26 n n S28 C29 6GW sing 27 n y C30 C29 6GW doub 28 n y C8 N10 6GW sing 29 n n C8 N9 6GW doub 30 n n N10 C14 6GW sing 31 n n N9 N13 6GW sing 32 n n C14 O15 6GW doub 33 n n C14 N13 6GW sing 34 n n C1 H1 6GW sing 35 n n C3 H2 6GW sing 36 n n C19 H3 6GW sing 37 n n C20 H4 6GW sing 38 n n C20 H5 6GW sing 39 n n C20 H6 6GW sing 40 n n C24 H7 6GW sing 41 n n C24 H8 6GW sing 42 n n C27 H9 6GW sing 43 n n C27 H10 6GW sing 44 n n C27 H11 6GW sing 45 n n C30 H12 6GW sing 46 n n C31 H13 6GW sing 47 n n C6 H14 6GW sing 48 n n O11 H15 6GW sing 49 n n O12 H16 6GW sing 50 n n N13 H17 6GW sing 51 n n C18 H18 6GW sing 52 n n C26 H19 6GW sing 53 n n C29 H20 6GW sing 54 n n # _atom_sites.entry_id 5J86 _atom_sites.fract_transf_matrix[1][1] 0.014908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GW A 1 301 0 6GW INH . C 3 HOH A 1 401 62 HOH HOH . C 3 HOH A 2 402 19 HOH HOH . C 3 HOH A 3 403 31 HOH HOH . C 3 HOH A 4 404 56 HOH HOH . C 3 HOH A 5 405 7 HOH HOH . C 3 HOH A 6 406 2 HOH HOH . C 3 HOH A 7 407 1 HOH HOH . C 3 HOH A 8 408 65 HOH HOH . C 3 HOH A 9 409 66 HOH HOH . C 3 HOH A 10 410 82 HOH HOH . C 3 HOH A 11 411 34 HOH HOH . C 3 HOH A 12 412 68 HOH HOH . C 3 HOH A 13 413 50 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 57 HOH HOH . C 3 HOH A 16 416 29 HOH HOH . C 3 HOH A 17 417 89 HOH HOH . C 3 HOH A 18 418 41 HOH HOH . C 3 HOH A 19 419 11 HOH HOH . C 3 HOH A 20 420 24 HOH HOH . C 3 HOH A 21 421 60 HOH HOH . C 3 HOH A 22 422 3 HOH HOH . C 3 HOH A 23 423 8 HOH HOH . C 3 HOH A 24 424 35 HOH HOH . C 3 HOH A 25 425 9 HOH HOH . C 3 HOH A 26 426 15 HOH HOH . C 3 HOH A 27 427 84 HOH HOH . C 3 HOH A 28 428 18 HOH HOH . C 3 HOH A 29 429 76 HOH HOH . C 3 HOH A 30 430 12 HOH HOH . C 3 HOH A 31 431 90 HOH HOH . C 3 HOH A 32 432 91 HOH HOH . C 3 HOH A 33 433 85 HOH HOH . C 3 HOH A 34 434 72 HOH HOH . C 3 HOH A 35 435 39 HOH HOH . C 3 HOH A 36 436 88 HOH HOH . C 3 HOH A 37 437 54 HOH HOH . C 3 HOH A 38 438 42 HOH HOH . C 3 HOH A 39 439 32 HOH HOH . C 3 HOH A 40 440 77 HOH HOH . C 3 HOH A 41 441 71 HOH HOH . C 3 HOH A 42 442 61 HOH HOH . C 3 HOH A 43 443 6 HOH HOH . C 3 HOH A 44 444 69 HOH HOH . C 3 HOH A 45 445 81 HOH HOH . C 3 HOH A 46 446 80 HOH HOH . C 3 HOH A 47 447 36 HOH HOH . C 3 HOH A 48 448 64 HOH HOH . C 3 HOH A 49 449 13 HOH HOH . C 3 HOH A 50 450 4 HOH HOH . C 3 HOH A 51 451 87 HOH HOH . C 3 HOH A 52 452 10 HOH HOH . C 3 HOH A 53 453 25 HOH HOH . C 3 HOH A 54 454 5 HOH HOH . C 3 HOH A 55 455 48 HOH HOH . C 3 HOH A 56 456 74 HOH HOH . C 3 HOH A 57 457 44 HOH HOH . C 3 HOH A 58 458 78 HOH HOH . C 3 HOH A 59 459 53 HOH HOH . C 3 HOH A 60 460 49 HOH HOH . C 3 HOH A 61 461 70 HOH HOH . C 3 HOH A 62 462 16 HOH HOH . C 3 HOH A 63 463 23 HOH HOH . C 3 HOH A 64 464 30 HOH HOH . C 3 HOH A 65 465 40 HOH HOH . C 3 HOH A 66 466 73 HOH HOH . C 3 HOH A 67 467 17 HOH HOH . C 3 HOH A 68 468 52 HOH HOH . C 3 HOH A 69 469 58 HOH HOH . C 3 HOH A 70 470 26 HOH HOH . C 3 HOH A 71 471 46 HOH HOH . C 3 HOH A 72 472 38 HOH HOH . C 3 HOH A 73 473 21 HOH HOH . C 3 HOH A 74 474 45 HOH HOH . C 3 HOH A 75 475 20 HOH HOH . C 3 HOH A 76 476 28 HOH HOH . C 3 HOH A 77 477 67 HOH HOH . C 3 HOH A 78 478 51 HOH HOH . C 3 HOH A 79 479 55 HOH HOH . C 3 HOH A 80 480 86 HOH HOH . C 3 HOH A 81 481 47 HOH HOH . C 3 HOH A 82 482 22 HOH HOH . C 3 HOH A 83 483 33 HOH HOH . C 3 HOH A 84 484 75 HOH HOH . C 3 HOH A 85 485 63 HOH HOH . C 3 HOH A 86 486 37 HOH HOH . C 3 HOH A 87 487 83 HOH HOH . C 3 HOH A 88 488 27 HOH HOH . C 3 HOH A 89 489 59 HOH HOH . C 3 HOH A 90 490 79 HOH HOH . C 3 HOH A 91 491 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6GW . . . B 2 -33.316 -7.523 24.727 1 55.57 ? C1 6GW 301 A 1 HETATM 2 C C2 6GW . . . B 2 -32.782 -12.365 23.014 1 45.33 ? C2 6GW 301 A 1 HETATM 3 C C3 6GW . . . B 2 -31.512 -12.045 23.522 1 47.22 ? C3 6GW 301 A 1 HETATM 4 C C7 6GW . . . B 2 -33.943 -11.934 23.686 1 47.67 ? C7 6GW 301 A 1 HETATM 5 C C8 6GW . . . B 2 -32.503 -10.053 26.617 1 51.05 ? C8 6GW 301 A 1 HETATM 6 C C14 6GW . . . B 2 -32.881 -8.356 27.979 1 55.13 ? C14 6GW 301 A 1 HETATM 7 C C16 6GW . . . B 2 -33.971 -8.179 25.779 1 54.68 ? C16 6GW 301 A 1 HETATM 8 C C19 6GW . . . B 2 -35.439 -6.892 23.763 1 56.36 ? C19 6GW 301 A 1 HETATM 9 C C20 6GW . . . B 2 -36.147 -8.851 26.916 1 53.98 ? C20 6GW 301 A 1 HETATM 10 C C21 6GW . . . B 2 -35.329 -12.314 23.323 1 48.31 ? C21 6GW 301 A 1 HETATM 11 C C24 6GW . . . B 2 -37.219 -13.91 23.524 1 50.41 ? C24 6GW 301 A 1 HETATM 12 C C27 6GW . . . B 2 -34.918 -14.534 24.334 1 47.06 ? C27 6GW 301 A 1 HETATM 13 C C30 6GW . . . B 2 -39.09 -15.111 26.535 1 53.17 ? C30 6GW 301 A 1 HETATM 14 C C31 6GW . . . B 2 -38.512 -15.211 25.278 1 49.34 ? C31 6GW 301 A 1 HETATM 15 C C4 6GW . . . B 2 -31.415 -11.317 24.711 1 48.48 ? C4 6GW 301 A 1 HETATM 16 C C5 6GW . . . B 2 -32.572 -10.912 25.406 1 48.66 ? C5 6GW 301 A 1 HETATM 17 C C6 6GW . . . B 2 -33.823 -11.236 24.89 1 46.87 ? C6 6GW 301 A 1 HETATM 18 N N9 6GW . . . B 2 -31.817 -10.285 27.708 1 50.18 ? N9 6GW 301 A 1 HETATM 19 N N10 6GW . . . B 2 -33.172 -8.838 26.756 1 54.82 ? N10 6GW 301 A 1 HETATM 20 O O11 6GW . . . B 2 -30.202 -11.024 25.231 1 48.81 ? O11 6GW 301 A 1 HETATM 21 O O12 6GW . . . B 2 -32.897 -13.035 21.849 1 44.35 ? O12 6GW 301 A 1 HETATM 22 N N13 6GW . . . B 2 -32.055 -9.23 28.586 1 52.76 ? N13 6GW 301 A 1 HETATM 23 O O15 6GW . . . B 2 -33.301 -7.314 28.445 1 57.82 ? O15 6GW 301 A 1 HETATM 24 C C17 6GW . . . B 2 -35.379 -8.176 25.812 1 56.09 ? C17 6GW 301 A 1 HETATM 25 C C18 6GW . . . B 2 -36.109 -7.541 24.799 1 55.57 ? C18 6GW 301 A 1 HETATM 26 N N22 6GW . . . B 2 -35.802 -13.539 23.702 1 48.73 ? N22 6GW 301 A 1 HETATM 27 O O23 6GW . . . B 2 -36.062 -11.487 22.819 1 50.43 ? O23 6GW 301 A 1 HETATM 28 C C25 6GW . . . B 2 -37.935 -14.085 24.841 1 52.31 ? C25 6GW 301 A 1 HETATM 29 C C26 6GW . . . B 2 -34.043 -6.889 23.722 1 56.39 ? C26 6GW 301 A 1 HETATM 30 S S28 6GW . . . B 2 -38.114 -12.817 26.043 1 60.6 ? S28 6GW 301 A 1 HETATM 31 C C29 6GW . . . B 2 -38.997 -13.903 27.113 1 57.39 ? C29 6GW 301 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #