data_5J89 # _model_server_result.job_id VE3zCrRNuJW-wZ0QjcACVg _model_server_result.datetime_utc '2024-12-27 11:39:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5J89 # _exptl.entry_id 5J89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J89 _cell.length_a 40.834 _cell.length_b 85.093 _cell.length_c 161.772 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H,J 1 1 B,D,F,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 C CYS 40 1_555 A SG CYS 113 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 39 A CYS 40 1_555 B SG CYS 113 A CYS 114 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 39 A CYS 40 1_555 B SG CYS 113 A CYS 114 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 C SG CYS 39 D CYS 40 1_555 C SG CYS 113 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 D SG CYS 39 B CYS 40 1_555 D SG CYS 113 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 5J89 _atom_sites.fract_transf_matrix[1][1] 0.024489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6GX C 1 201 2 6GX 202 . F 3 EDO A 1 201 1 EDO EDO . G 2 6GX B 1 201 1 6GX 202 . H 4 HOH C 1 301 112 HOH HOH . H 4 HOH C 2 302 25 HOH HOH . H 4 HOH C 3 303 122 HOH HOH . H 4 HOH C 4 304 64 HOH HOH . H 4 HOH C 5 305 158 HOH HOH . H 4 HOH C 6 306 4 HOH HOH . H 4 HOH C 7 307 136 HOH HOH . H 4 HOH C 8 308 37 HOH HOH . H 4 HOH C 9 309 107 HOH HOH . H 4 HOH C 10 310 32 HOH HOH . H 4 HOH C 11 311 3 HOH HOH . H 4 HOH C 12 312 128 HOH HOH . H 4 HOH C 13 313 99 HOH HOH . H 4 HOH C 14 314 207 HOH HOH . H 4 HOH C 15 315 151 HOH HOH . H 4 HOH C 16 316 65 HOH HOH . H 4 HOH C 17 317 166 HOH HOH . H 4 HOH C 18 318 144 HOH HOH . H 4 HOH C 19 319 78 HOH HOH . H 4 HOH C 20 320 205 HOH HOH . H 4 HOH C 21 321 201 HOH HOH . H 4 HOH C 22 322 49 HOH HOH . H 4 HOH C 23 323 12 HOH HOH . H 4 HOH C 24 324 193 HOH HOH . H 4 HOH C 25 325 140 HOH HOH . H 4 HOH C 26 326 34 HOH HOH . H 4 HOH C 27 327 2 HOH HOH . H 4 HOH C 28 328 41 HOH HOH . H 4 HOH C 29 329 125 HOH HOH . H 4 HOH C 30 330 97 HOH HOH . H 4 HOH C 31 331 66 HOH HOH . H 4 HOH C 32 332 81 HOH HOH . H 4 HOH C 33 333 50 HOH HOH . H 4 HOH C 34 334 20 HOH HOH . H 4 HOH C 35 335 164 HOH HOH . H 4 HOH C 36 336 75 HOH HOH . H 4 HOH C 37 337 53 HOH HOH . H 4 HOH C 38 338 52 HOH HOH . H 4 HOH C 39 339 51 HOH HOH . H 4 HOH C 40 340 148 HOH HOH . H 4 HOH C 41 341 54 HOH HOH . H 4 HOH C 42 342 85 HOH HOH . H 4 HOH C 43 343 11 HOH HOH . H 4 HOH C 44 344 47 HOH HOH . H 4 HOH C 45 345 118 HOH HOH . H 4 HOH C 46 346 5 HOH HOH . H 4 HOH C 47 347 126 HOH HOH . H 4 HOH C 48 348 98 HOH HOH . H 4 HOH C 49 349 145 HOH HOH . H 4 HOH C 50 350 6 HOH HOH . H 4 HOH C 51 351 129 HOH HOH . H 4 HOH C 52 352 31 HOH HOH . H 4 HOH C 53 353 167 HOH HOH . H 4 HOH C 54 354 86 HOH HOH . H 4 HOH C 55 355 182 HOH HOH . H 4 HOH C 56 356 172 HOH HOH . H 4 HOH C 57 357 157 HOH HOH . H 4 HOH C 58 358 93 HOH HOH . H 4 HOH C 59 359 192 HOH HOH . H 4 HOH C 60 360 204 HOH HOH . H 4 HOH C 61 361 36 HOH HOH . H 4 HOH C 62 362 165 HOH HOH . H 4 HOH C 63 363 111 HOH HOH . H 4 HOH C 64 364 208 HOH HOH . H 4 HOH C 65 365 186 HOH HOH . H 4 HOH C 66 366 184 HOH HOH . I 4 HOH A 1 301 142 HOH HOH . I 4 HOH A 2 302 63 HOH HOH . I 4 HOH A 3 303 121 HOH HOH . I 4 HOH A 4 304 199 HOH HOH . I 4 HOH A 5 305 79 HOH HOH . I 4 HOH A 6 306 56 HOH HOH . I 4 HOH A 7 307 83 HOH HOH . I 4 HOH A 8 308 197 HOH HOH . I 4 HOH A 9 309 147 HOH HOH . I 4 HOH A 10 310 15 HOH HOH . I 4 HOH A 11 311 30 HOH HOH . I 4 HOH A 12 312 161 HOH HOH . I 4 HOH A 13 313 116 HOH HOH . I 4 HOH A 14 314 88 HOH HOH . I 4 HOH A 15 315 46 HOH HOH . I 4 HOH A 16 316 35 HOH HOH . I 4 HOH A 17 317 57 HOH HOH . I 4 HOH A 18 318 7 HOH HOH . I 4 HOH A 19 319 48 HOH HOH . I 4 HOH A 20 320 19 HOH HOH . I 4 HOH A 21 321 68 HOH HOH . I 4 HOH A 22 322 100 HOH HOH . I 4 HOH A 23 323 33 HOH HOH . I 4 HOH A 24 324 10 HOH HOH . I 4 HOH A 25 325 155 HOH HOH . I 4 HOH A 26 326 91 HOH HOH . I 4 HOH A 27 327 16 HOH HOH . I 4 HOH A 28 328 13 HOH HOH . I 4 HOH A 29 329 43 HOH HOH . I 4 HOH A 30 330 104 HOH HOH . I 4 HOH A 31 331 138 HOH HOH . I 4 HOH A 32 332 74 HOH HOH . I 4 HOH A 33 333 137 HOH HOH . I 4 HOH A 34 334 17 HOH HOH . I 4 HOH A 35 335 42 HOH HOH . I 4 HOH A 36 336 102 HOH HOH . I 4 HOH A 37 337 96 HOH HOH . I 4 HOH A 38 338 101 HOH HOH . I 4 HOH A 39 339 45 HOH HOH . I 4 HOH A 40 340 200 HOH HOH . I 4 HOH A 41 341 162 HOH HOH . I 4 HOH A 42 342 175 HOH HOH . I 4 HOH A 43 343 28 HOH HOH . I 4 HOH A 44 344 70 HOH HOH . I 4 HOH A 45 345 156 HOH HOH . I 4 HOH A 46 346 110 HOH HOH . I 4 HOH A 47 347 39 HOH HOH . I 4 HOH A 48 348 114 HOH HOH . I 4 HOH A 49 349 67 HOH HOH . I 4 HOH A 50 350 103 HOH HOH . I 4 HOH A 51 351 69 HOH HOH . I 4 HOH A 52 352 178 HOH HOH . I 4 HOH A 53 353 152 HOH HOH . I 4 HOH A 54 354 176 HOH HOH . I 4 HOH A 55 355 168 HOH HOH . I 4 HOH A 56 356 179 HOH HOH . I 4 HOH A 57 357 89 HOH HOH . I 4 HOH A 58 358 106 HOH HOH . I 4 HOH A 59 359 80 HOH HOH . I 4 HOH A 60 360 113 HOH HOH . I 4 HOH A 61 361 58 HOH HOH . I 4 HOH A 62 362 135 HOH HOH . I 4 HOH A 63 363 146 HOH HOH . I 4 HOH A 64 364 139 HOH HOH . I 4 HOH A 65 365 27 HOH HOH . I 4 HOH A 66 366 195 HOH HOH . I 4 HOH A 67 367 92 HOH HOH . I 4 HOH A 68 368 123 HOH HOH . I 4 HOH A 69 369 87 HOH HOH . I 4 HOH A 70 370 153 HOH HOH . J 4 HOH D 1 201 143 HOH HOH . J 4 HOH D 2 202 84 HOH HOH . J 4 HOH D 3 203 55 HOH HOH . J 4 HOH D 4 204 150 HOH HOH . J 4 HOH D 5 205 94 HOH HOH . J 4 HOH D 6 206 108 HOH HOH . J 4 HOH D 7 207 62 HOH HOH . J 4 HOH D 8 208 127 HOH HOH . J 4 HOH D 9 209 132 HOH HOH . J 4 HOH D 10 210 82 HOH HOH . J 4 HOH D 11 211 59 HOH HOH . J 4 HOH D 12 212 120 HOH HOH . J 4 HOH D 13 213 109 HOH HOH . J 4 HOH D 14 214 29 HOH HOH . J 4 HOH D 15 215 206 HOH HOH . J 4 HOH D 16 216 190 HOH HOH . J 4 HOH D 17 217 185 HOH HOH . J 4 HOH D 18 218 105 HOH HOH . J 4 HOH D 19 219 24 HOH HOH . J 4 HOH D 20 220 38 HOH HOH . J 4 HOH D 21 221 44 HOH HOH . J 4 HOH D 22 222 181 HOH HOH . J 4 HOH D 23 223 194 HOH HOH . J 4 HOH D 24 224 95 HOH HOH . J 4 HOH D 25 225 203 HOH HOH . J 4 HOH D 26 226 163 HOH HOH . J 4 HOH D 27 227 171 HOH HOH . J 4 HOH D 28 228 1 HOH HOH . J 4 HOH D 29 229 8 HOH HOH . J 4 HOH D 30 230 149 HOH HOH . J 4 HOH D 31 231 130 HOH HOH . J 4 HOH D 32 232 90 HOH HOH . J 4 HOH D 33 233 174 HOH HOH . J 4 HOH D 34 234 133 HOH HOH . J 4 HOH D 35 235 18 HOH HOH . J 4 HOH D 36 236 26 HOH HOH . J 4 HOH D 37 237 22 HOH HOH . J 4 HOH D 38 238 196 HOH HOH . J 4 HOH D 39 239 160 HOH HOH . J 4 HOH D 40 240 115 HOH HOH . J 4 HOH D 41 241 189 HOH HOH . J 4 HOH D 42 242 183 HOH HOH . J 4 HOH D 43 243 198 HOH HOH . J 4 HOH D 44 244 77 HOH HOH . J 4 HOH D 45 245 23 HOH HOH . J 4 HOH D 46 246 159 HOH HOH . K 4 HOH B 1 301 61 HOH HOH . K 4 HOH B 2 302 117 HOH HOH . K 4 HOH B 3 303 202 HOH HOH . K 4 HOH B 4 304 134 HOH HOH . K 4 HOH B 5 305 14 HOH HOH . K 4 HOH B 6 306 141 HOH HOH . K 4 HOH B 7 307 73 HOH HOH . K 4 HOH B 8 308 76 HOH HOH . K 4 HOH B 9 309 119 HOH HOH . K 4 HOH B 10 310 40 HOH HOH . K 4 HOH B 11 311 72 HOH HOH . K 4 HOH B 12 312 71 HOH HOH . K 4 HOH B 13 313 154 HOH HOH . K 4 HOH B 14 314 187 HOH HOH . K 4 HOH B 15 315 124 HOH HOH . K 4 HOH B 16 316 173 HOH HOH . K 4 HOH B 17 317 9 HOH HOH . K 4 HOH B 18 318 131 HOH HOH . K 4 HOH B 19 319 188 HOH HOH . K 4 HOH B 20 320 191 HOH HOH . K 4 HOH B 21 321 180 HOH HOH . K 4 HOH B 22 322 21 HOH HOH . K 4 HOH B 23 323 169 HOH HOH . K 4 HOH B 24 324 170 HOH HOH . K 4 HOH B 25 325 177 HOH HOH . K 4 HOH B 26 326 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 16.852 6.234 208.753 1 20 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . F 3 15.757 7.09 208.502 1 20 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . F 3 18.126 7.013 208.987 1 20 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . F 3 19.1 6.738 207.995 1 20 ? O2 EDO 201 A 1 HETATM 5 H H11 EDO . . . F 3 16.63 5.618 209.623 1 20 ? H11 EDO 201 A 1 HETATM 6 H H12 EDO . . . F 3 16.99 5.569 207.905 1 20 ? H12 EDO 201 A 1 HETATM 7 H HO1 EDO . . . F 3 15.413 7.425 209.339 1 20 ? HO1 EDO 201 A 1 HETATM 8 H H21 EDO . . . F 3 17.902 8.077 208.983 1 20 ? H21 EDO 201 A 1 HETATM 9 H H22 EDO . . . F 3 18.53 6.755 209.965 1 20 ? H22 EDO 201 A 1 HETATM 10 H HO2 EDO . . . F 3 19.593 7.541 207.783 1 20 ? HO2 EDO 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #