data_5J8C # _model_server_result.job_id wL0KFuRwPAYV6jTaIcrifA _model_server_result.datetime_utc '2024-11-08 03:02:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5J8C # _exptl.entry_id 5J8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J8C _cell.length_a 46.148 _cell.length_b 55.676 _cell.length_c 122.311 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 122 A HIS 273 1_555 A N ALY 123 A ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALY 123 A ALY 274 1_555 A N THR 124 A THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 59 A CYS 210 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A SG CYS 62 A CYS 213 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A NE2 HIS 75 A HIS 226 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 A SG CYS 79 A CYS 230 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 A O ILE 147 A ILE 298 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 A O ALA 183 A ALA 334 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc7 A OE2 GLU 187 A GLU 338 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 A OH TYR 213 A TYR 364 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5J8C _atom_sites.fract_transf_matrix[1][1] 0.021669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 CL A 1 502 1 CL CL . D 3 CL A 1 503 2 CL CL . E 4 NA A 1 504 1 NA NA . F 4 NA A 1 505 2 NA NA . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 184 HOH HOH . G 5 HOH A 3 603 18 HOH HOH . G 5 HOH A 4 604 10 HOH HOH . G 5 HOH A 5 605 129 HOH HOH . G 5 HOH A 6 606 203 HOH HOH . G 5 HOH A 7 607 27 HOH HOH . G 5 HOH A 8 608 9 HOH HOH . G 5 HOH A 9 609 43 HOH HOH . G 5 HOH A 10 610 219 HOH HOH . G 5 HOH A 11 611 6 HOH HOH . G 5 HOH A 12 612 187 HOH HOH . G 5 HOH A 13 613 52 HOH HOH . G 5 HOH A 14 614 189 HOH HOH . G 5 HOH A 15 615 133 HOH HOH . G 5 HOH A 16 616 7 HOH HOH . G 5 HOH A 17 617 17 HOH HOH . G 5 HOH A 18 618 11 HOH HOH . G 5 HOH A 19 619 134 HOH HOH . G 5 HOH A 20 620 60 HOH HOH . G 5 HOH A 21 621 213 HOH HOH . G 5 HOH A 22 622 135 HOH HOH . G 5 HOH A 23 623 5 HOH HOH . G 5 HOH A 24 624 3 HOH HOH . G 5 HOH A 25 625 39 HOH HOH . G 5 HOH A 26 626 48 HOH HOH . G 5 HOH A 27 627 190 HOH HOH . G 5 HOH A 28 628 31 HOH HOH . G 5 HOH A 29 629 177 HOH HOH . G 5 HOH A 30 630 131 HOH HOH . G 5 HOH A 31 631 97 HOH HOH . G 5 HOH A 32 632 226 HOH HOH . G 5 HOH A 33 633 137 HOH HOH . G 5 HOH A 34 634 19 HOH HOH . G 5 HOH A 35 635 212 HOH HOH . G 5 HOH A 36 636 171 HOH HOH . G 5 HOH A 37 637 13 HOH HOH . G 5 HOH A 38 638 153 HOH HOH . G 5 HOH A 39 639 202 HOH HOH . G 5 HOH A 40 640 2 HOH HOH . G 5 HOH A 41 641 159 HOH HOH . G 5 HOH A 42 642 149 HOH HOH . G 5 HOH A 43 643 49 HOH HOH . G 5 HOH A 44 644 185 HOH HOH . G 5 HOH A 45 645 178 HOH HOH . G 5 HOH A 46 646 23 HOH HOH . G 5 HOH A 47 647 15 HOH HOH . G 5 HOH A 48 648 130 HOH HOH . G 5 HOH A 49 649 214 HOH HOH . G 5 HOH A 50 650 225 HOH HOH . G 5 HOH A 51 651 140 HOH HOH . G 5 HOH A 52 652 172 HOH HOH . G 5 HOH A 53 653 139 HOH HOH . G 5 HOH A 54 654 128 HOH HOH . G 5 HOH A 55 655 4 HOH HOH . G 5 HOH A 56 656 238 HOH HOH . G 5 HOH A 57 657 181 HOH HOH . G 5 HOH A 58 658 180 HOH HOH . G 5 HOH A 59 659 144 HOH HOH . G 5 HOH A 60 660 25 HOH HOH . G 5 HOH A 61 661 146 HOH HOH . G 5 HOH A 62 662 151 HOH HOH . G 5 HOH A 63 663 168 HOH HOH . G 5 HOH A 64 664 169 HOH HOH . G 5 HOH A 65 665 176 HOH HOH . G 5 HOH A 66 666 228 HOH HOH . G 5 HOH A 67 667 28 HOH HOH . G 5 HOH A 68 668 179 HOH HOH . G 5 HOH A 69 669 175 HOH HOH . G 5 HOH A 70 670 136 HOH HOH . G 5 HOH A 71 671 209 HOH HOH . G 5 HOH A 72 672 12 HOH HOH . G 5 HOH A 73 673 201 HOH HOH . G 5 HOH A 74 674 193 HOH HOH . G 5 HOH A 75 675 34 HOH HOH . G 5 HOH A 76 676 243 HOH HOH . G 5 HOH A 77 677 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.968 _atom_site.Cartn_y -5.234 _atom_site.Cartn_z -32.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #