data_5J8I # _model_server_result.job_id 1LfQPJOy2zSptPEiJD1weA _model_server_result.datetime_utc '2024-11-15 00:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5J8I # _exptl.entry_id 5J8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.947 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)oxy]phenyl}prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J8I _cell.length_a 58.248 _cell.length_b 133.343 _cell.length_c 145.039 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 174 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C31 _struct_conn.ptnr2_label_comp_id 6H4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6H4 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.8 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H25 Cl N6 O2' _chem_comp.formula_weight 464.947 _chem_comp.id 6H4 _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)oxy]phenyl}prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 6H4 sing 1 n n C05 N02 6H4 sing 2 n n C05 C06 6H4 sing 3 n n N02 C03 6H4 sing 4 n n C06 N07 6H4 sing 5 n n C03 C04 6H4 sing 6 n n C04 N07 6H4 sing 7 n n N07 C08 6H4 sing 8 n n C26 C25 6H4 doub 9 n y C26 C27 6H4 sing 10 n y C08 C09 6H4 doub 11 n y C08 C11 6H4 sing 12 n y C25 C24 6H4 sing 13 n y C09 C10 6H4 sing 14 n y O32 C29 6H4 doub 15 n n C30 C29 6H4 sing 16 n n C30 C31 6H4 doub 17 n n C29 N28 6H4 sing 18 n n C11 C12 6H4 doub 19 n y N28 C27 6H4 sing 20 n n C10 C13 6H4 doub 21 n y C27 C22 6H4 doub 22 n y C24 C23 6H4 doub 23 n y C12 C13 6H4 sing 24 n y C13 N14 6H4 sing 25 n n C22 C23 6H4 sing 26 n y C22 O21 6H4 sing 27 n n N14 C15 6H4 sing 28 n n N33 C15 6H4 doub 29 n y N33 C20 6H4 sing 30 n y C15 N16 6H4 sing 31 n y O21 C20 6H4 sing 32 n n C20 C18 6H4 doub 33 n y N16 C17 6H4 doub 34 n y C18 C17 6H4 sing 35 n y C18 CL19 6H4 sing 36 n n C10 H1 6H4 sing 37 n n C11 H2 6H4 sing 38 n n C12 H3 6H4 sing 39 n n C17 H4 6H4 sing 40 n n C01 H5 6H4 sing 41 n n C01 H6 6H4 sing 42 n n C01 H7 6H4 sing 43 n n C03 H9 6H4 sing 44 n n C03 H10 6H4 sing 45 n n C04 H11 6H4 sing 46 n n C04 H12 6H4 sing 47 n n C05 H13 6H4 sing 48 n n C05 H14 6H4 sing 49 n n C06 H15 6H4 sing 50 n n C06 H16 6H4 sing 51 n n C09 H17 6H4 sing 52 n n N14 H18 6H4 sing 53 n n C23 H19 6H4 sing 54 n n C24 H20 6H4 sing 55 n n C25 H21 6H4 sing 56 n n C26 H22 6H4 sing 57 n n N28 H23 6H4 sing 58 n n C30 H24 6H4 sing 59 n n C31 H26 6H4 sing 60 n n C31 H27 6H4 sing 61 n n # _atom_sites.entry_id 5J8I _atom_sites.fract_transf_matrix[1][1] 0.017168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 6H4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 6H4 _pdbx_nonpoly_scheme.auth_mon_id TL3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6H4 . . . B 2 -16.212 -49.19 -18.272 1 92.58 ? C10 6H4 601 A 1 HETATM 2 C C11 6H4 . . . B 2 -18.953 -48.643 -18.43 1 81.87 ? C11 6H4 601 A 1 HETATM 3 C C12 6H4 . . . B 2 -18.111 -47.84 -17.645 1 79.78 ? C12 6H4 601 A 1 HETATM 4 C C13 6H4 . . . B 2 -16.738 -48.122 -17.564 1 89.68 ? C13 6H4 601 A 1 HETATM 5 C C15 6H4 . . . B 2 -14.583 -47.604 -16.221 1 85.95 ? C15 6H4 601 A 1 HETATM 6 C C17 6H4 . . . B 2 -12.705 -46.833 -15.103 1 105.34 ? C17 6H4 601 A 1 HETATM 7 C C18 6H4 . . . B 2 -12.167 -48.088 -15.207 1 97.54 ? C18 6H4 601 A 1 HETATM 8 C C20 6H4 . . . B 2 -12.904 -49.102 -15.852 1 103.86 ? C20 6H4 601 A 1 HETATM 9 C C01 6H4 . . . B 2 -21.571 -53.052 -22.231 1 102.46 ? C01 6H4 601 A 1 HETATM 10 N N02 6H4 . . . B 2 -20.869 -52.347 -21.418 1 106.02 ? N02 6H4 601 A 1 HETATM 11 C C03 6H4 . . . B 2 -21.334 -51.073 -21.391 1 82.14 ? C03 6H4 601 A 1 HETATM 12 C C04 6H4 . . . B 2 -20.675 -50.254 -20.255 1 95.97 ? C04 6H4 601 A 1 HETATM 13 C C05 6H4 . . . B 2 -19.538 -52.384 -21.802 1 100.03 ? C05 6H4 601 A 1 HETATM 14 C C06 6H4 . . . B 2 -18.68 -51.3 -21.126 1 98.03 ? C06 6H4 601 A 1 HETATM 15 N N07 6H4 . . . B 2 -19.283 -50.611 -19.989 1 93.3 ? N07 6H4 601 A 1 HETATM 16 C C08 6H4 . . . B 2 -18.412 -49.73 -19.136 1 91.05 ? C08 6H4 601 A 1 HETATM 17 C C09 6H4 . . . B 2 -17.061 -50.003 -19.064 1 93.39 ? C09 6H4 601 A 1 HETATM 18 N N14 6H4 . . . B 2 -15.875 -47.251 -16.734 1 85.94 ? N14 6H4 601 A 1 HETATM 19 N N16 6H4 . . . B 2 -13.9 -46.634 -15.614 1 100.94 ? N16 6H4 601 A 1 HETATM 20 CL CL19 6H4 . . . B 2 -10.553 -48.426 -14.535 1 105.31 ? CL19 6H4 601 A 1 HETATM 21 O O21 6H4 . . . B 2 -12.34 -50.393 -15.947 1 98.44 ? O21 6H4 601 A 1 HETATM 22 C C22 6H4 . . . B 2 -12.746 -51.124 -17.089 1 97.76 ? C22 6H4 601 A 1 HETATM 23 C C23 6H4 . . . B 2 -13.908 -51.869 -17.066 1 105.62 ? C23 6H4 601 A 1 HETATM 24 C C24 6H4 . . . B 2 -14.295 -52.616 -18.222 1 101.71 ? C24 6H4 601 A 1 HETATM 25 C C25 6H4 . . . B 2 -13.489 -52.609 -19.393 1 101.89 ? C25 6H4 601 A 1 HETATM 26 C C26 6H4 . . . B 2 -12.311 -51.868 -19.414 1 105 ? C26 6H4 601 A 1 HETATM 27 C C27 6H4 . . . B 2 -11.927 -51.129 -18.269 1 106.09 ? C27 6H4 601 A 1 HETATM 28 N N28 6H4 . . . B 2 -10.691 -50.362 -18.304 1 111.79 ? N28 6H4 601 A 1 HETATM 29 C C29 6H4 . . . B 2 -9.439 -51.004 -18.66 1 112.33 ? C29 6H4 601 A 1 HETATM 30 C C30 6H4 . . . B 2 -8.191 -50.145 -18.667 1 104.2 ? C30 6H4 601 A 1 HETATM 31 C C31 6H4 . . . B 2 -8.472 -48.864 -17.752 1 105.35 ? C31 6H4 601 A 1 HETATM 32 O O32 6H4 . . . B 2 -9.377 -52.144 -18.927 1 105.82 ? O32 6H4 601 A 1 HETATM 33 N N33 6H4 . . . B 2 -14.096 -48.818 -16.336 1 102.69 ? N33 6H4 601 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1218 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #