data_5J8O # _model_server_result.job_id U_OuuYR3qkFTIRahICxTpg _model_server_result.datetime_utc '2025-02-27 01:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5J8O # _exptl.entry_id 5J8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.42 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J8O _cell.length_a 34.313 _cell.length_b 55.182 _cell.length_c 141.773 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 40 1_555 A SG CYS 97 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 23 B CYS 40 1_555 B SG CYS 97 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C27 H28 Br N O3' _chem_comp.formula_weight 494.42 _chem_comp.id 6GZ _chem_comp.mon_nstd_flag . _chem_comp.name "(2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 6GZ sing 1 n n C11 C12 6GZ sing 2 n n C10 C9 6GZ sing 3 n n O2 C14 6GZ doub 4 n n C9 N 6GZ sing 5 n n C12 C13 6GZ sing 6 n n C14 C13 6GZ sing 7 n n C14 O1 6GZ sing 8 n n N C8 6GZ sing 9 n n N C13 6GZ sing 10 n n C6 C5 6GZ doub 11 n y C6 C7 6GZ sing 12 n y C8 C7 6GZ sing 13 n n C5 C4 6GZ sing 14 n y C7 C15 6GZ doub 15 n y C C1 6GZ sing 16 n n C4 O 6GZ sing 17 n n C4 C16 6GZ doub 18 n y C15 C16 6GZ sing 19 n y C3 O 6GZ sing 20 n n C3 C2 6GZ sing 21 n n C24 C25 6GZ doub 22 n y C24 C23 6GZ sing 23 n y C25 C26 6GZ sing 24 n y C1 C2 6GZ doub 25 n y C1 C20 6GZ sing 26 n y C23 C22 6GZ doub 27 n y C16 BR 6GZ sing 28 n n C26 C21 6GZ doub 29 n y C22 C21 6GZ sing 30 n y C2 C17 6GZ sing 31 n y C21 C20 6GZ sing 32 n n C20 C19 6GZ doub 33 n y C17 C18 6GZ doub 34 n y C19 C18 6GZ sing 35 n y C15 H1 6GZ sing 36 n n C8 H2 6GZ sing 37 n n C8 H3 6GZ sing 38 n n C13 H5 6GZ sing 39 n n O1 H6 6GZ sing 40 n n C12 H7 6GZ sing 41 n n C12 H8 6GZ sing 42 n n C11 H9 6GZ sing 43 n n C11 H10 6GZ sing 44 n n C10 H11 6GZ sing 45 n n C10 H12 6GZ sing 46 n n C9 H13 6GZ sing 47 n n C9 H14 6GZ sing 48 n n C6 H15 6GZ sing 49 n n C5 H16 6GZ sing 50 n n C3 H17 6GZ sing 51 n n C3 H18 6GZ sing 52 n n C17 H19 6GZ sing 53 n n C18 H20 6GZ sing 54 n n C19 H21 6GZ sing 55 n n C H22 6GZ sing 56 n n C H23 6GZ sing 57 n n C H24 6GZ sing 58 n n C26 H25 6GZ sing 59 n n C25 H26 6GZ sing 60 n n C24 H27 6GZ sing 61 n n C23 H28 6GZ sing 62 n n C22 H29 6GZ sing 63 n n # _atom_sites.entry_id 5J8O _atom_sites.fract_transf_matrix[1][1] 0.029143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6GZ A 1 201 1 6GZ 8 . D 3 HOH A 1 301 6 HOH HOH . D 3 HOH A 2 302 2 HOH HOH . D 3 HOH A 3 303 30 HOH HOH . D 3 HOH A 4 304 43 HOH HOH . D 3 HOH A 5 305 18 HOH HOH . D 3 HOH A 6 306 21 HOH HOH . D 3 HOH A 7 307 34 HOH HOH . D 3 HOH A 8 308 15 HOH HOH . D 3 HOH A 9 309 32 HOH HOH . D 3 HOH A 10 310 9 HOH HOH . D 3 HOH A 11 311 10 HOH HOH . D 3 HOH A 12 312 103 HOH HOH . E 3 HOH B 1 201 3 HOH HOH . E 3 HOH B 2 202 5 HOH HOH . E 3 HOH B 3 203 7 HOH HOH . E 3 HOH B 4 204 11 HOH HOH . E 3 HOH B 5 205 22 HOH HOH . E 3 HOH B 6 206 20 HOH HOH . E 3 HOH B 7 207 23 HOH HOH . E 3 HOH B 8 208 47 HOH HOH . E 3 HOH B 9 209 25 HOH HOH . E 3 HOH B 10 210 8 HOH HOH . E 3 HOH B 11 211 53 HOH HOH . E 3 HOH B 12 212 31 HOH HOH . E 3 HOH B 13 213 36 HOH HOH . E 3 HOH B 14 214 14 HOH HOH . E 3 HOH B 15 215 13 HOH HOH . E 3 HOH B 16 216 33 HOH HOH . E 3 HOH B 17 217 1 HOH HOH . E 3 HOH B 18 218 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR 6GZ . . . C 2 3.159 36.901 24.947 1 53.74 ? BR 6GZ 201 A 1 HETATM 2 C C16 6GZ . . . C 2 3.015 37.315 23.102 1 43.61 ? C16 6GZ 201 A 1 HETATM 3 C C15 6GZ . . . C 2 1.844 37.701 22.458 1 45.73 ? C15 6GZ 201 A 1 HETATM 4 C C7 6GZ . . . C 2 1.861 37.963 21.077 1 45.29 ? C7 6GZ 201 A 1 HETATM 5 C C8 6GZ . . . C 2 0.613 38.412 20.377 1 47.32 ? C8 6GZ 201 A 1 HETATM 6 N N 6GZ . . . C 2 -0.35 37.302 20.173 1 55.88 ? N 6GZ 201 A 1 HETATM 7 C C13 6GZ . . . C 2 -1.777 37.732 20.418 1 59.27 ? C13 6GZ 201 A 1 HETATM 8 C C14 6GZ . . . C 2 -2.19 39.135 19.963 1 63.95 ? C14 6GZ 201 A 1 HETATM 9 O O2 6GZ . . . C 2 -1.871 39.597 18.866 1 71.48 ? O2 6GZ 201 A 1 HETATM 10 O O1 6GZ . . . C 2 -2.915 39.918 20.787 1 54.28 ? O1 6GZ 201 A 1 HETATM 11 C C12 6GZ . . . C 2 -2.752 36.682 19.882 1 61.05 ? C12 6GZ 201 A 1 HETATM 12 C C11 6GZ . . . C 2 -2.439 36.178 18.477 1 62.61 ? C11 6GZ 201 A 1 HETATM 13 C C10 6GZ . . . C 2 -1.062 35.537 18.504 1 59.58 ? C10 6GZ 201 A 1 HETATM 14 C C9 6GZ . . . C 2 -0.03 36.588 18.9 1 58.08 ? C9 6GZ 201 A 1 HETATM 15 C C6 6GZ . . . C 2 3.024 37.845 20.336 1 43.61 ? C6 6GZ 201 A 1 HETATM 16 C C5 6GZ . . . C 2 4.211 37.46 20.932 1 42.43 ? C5 6GZ 201 A 1 HETATM 17 C C4 6GZ . . . C 2 4.241 37.182 22.306 1 43.08 ? C4 6GZ 201 A 1 HETATM 18 O O 6GZ . . . C 2 5.364 36.82 22.98 1 38.26 ? O 6GZ 201 A 1 HETATM 19 C C3 6GZ . . . C 2 6.612 37.275 22.481 1 34.7 ? C3 6GZ 201 A 1 HETATM 20 C C2 6GZ . . . C 2 7.78 37.001 23.358 1 31.42 ? C2 6GZ 201 A 1 HETATM 21 C C17 6GZ . . . C 2 7.702 36.232 24.512 1 32.37 ? C17 6GZ 201 A 1 HETATM 22 C C18 6GZ . . . C 2 8.851 36.017 25.28 1 30.83 ? C18 6GZ 201 A 1 HETATM 23 C C19 6GZ . . . C 2 10.084 36.555 24.918 1 30.33 ? C19 6GZ 201 A 1 HETATM 24 C C20 6GZ . . . C 2 10.254 37.314 23.785 1 29.2 ? C20 6GZ 201 A 1 HETATM 25 C C1 6GZ . . . C 2 9.075 37.568 22.949 1 31.39 ? C1 6GZ 201 A 1 HETATM 26 C C 6GZ . . . C 2 9.23 38.377 21.708 1 32.83 ? C 6GZ 201 A 1 HETATM 27 C C21 6GZ . . . C 2 11.585 37.857 23.428 1 27.7 ? C21 6GZ 201 A 1 HETATM 28 C C26 6GZ . . . C 2 12.652 37.015 23.189 1 27.98 ? C26 6GZ 201 A 1 HETATM 29 C C25 6GZ . . . C 2 13.898 37.549 22.861 1 27.32 ? C25 6GZ 201 A 1 HETATM 30 C C24 6GZ . . . C 2 14.074 38.902 22.782 1 27.16 ? C24 6GZ 201 A 1 HETATM 31 C C23 6GZ . . . C 2 12.999 39.753 22.991 1 27.05 ? C23 6GZ 201 A 1 HETATM 32 C C22 6GZ . . . C 2 11.76 39.221 23.315 1 29.17 ? C22 6GZ 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 700 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #