data_5J8X # _model_server_result.job_id Iip6h27HxEuf3-glTwAKeQ _model_server_result.datetime_utc '2024-11-16 15:49:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 5J8X # _exptl.entry_id 5J8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J8X _cell.length_a 50.223 _cell.length_b 61.606 _cell.length_c 138.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 67 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id B17 _struct_conn.ptnr2_label_comp_id OK3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id OK3 _struct_conn.ptnr2_auth_seq_id 400 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.387 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H18 B N2 O6 -1' _chem_comp.formula_weight 357.146 _chem_comp.id OK3 _chem_comp.mon_nstd_flag . _chem_comp.name '(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 OK3 sing 237 n n C02 C03 OK3 sing 238 n n C03 C04 OK3 sing 239 n y C03 C08 OK3 doub 240 n y C04 C05 OK3 doub 241 n y C05 C06 OK3 sing 242 n y C06 C07 OK3 doub 243 n y C06 C09 OK3 sing 244 n n C07 C08 OK3 sing 245 n y C09 O10 OK3 doub 246 n n C09 N11 OK3 sing 247 n n N11 C12 OK3 sing 248 n n C12 C13 OK3 sing 249 n n C12 B17 OK3 sing 250 n n C13 C14 OK3 sing 251 n n C14 C15 OK3 sing 252 n y C14 C23 OK3 doub 253 n y C15 O16 OK3 sing 254 n n C15 C20 OK3 doub 255 n y O16 B17 OK3 sing 256 n n B17 O18 OK3 sing 257 n n B17 O19 OK3 sing 258 n n C20 C21 OK3 sing 259 n y C20 C24 OK3 sing 260 n n C21 C22 OK3 doub 261 n y C22 C23 OK3 sing 262 n y C24 O25 OK3 doub 263 n n C24 O26 OK3 sing 264 n n N01 H011 OK3 sing 265 n n N01 H012 OK3 sing 266 n n C02 H021 OK3 sing 267 n n C02 H022 OK3 sing 268 n n C04 H04 OK3 sing 269 n n C08 H08 OK3 sing 270 n n C05 H05 OK3 sing 271 n n C07 H07 OK3 sing 272 n n N11 H11 OK3 sing 273 n n C12 H12 OK3 sing 274 n n C13 H131 OK3 sing 275 n n C13 H132 OK3 sing 276 n n C23 H23 OK3 sing 277 n n O18 H18 OK3 sing 278 n n O19 H19 OK3 sing 279 n n C21 H21 OK3 sing 280 n n C22 H22 OK3 sing 281 n n O26 H26 OK3 sing 282 n n # _atom_sites.entry_id 5J8X _atom_sites.fract_transf_matrix[1][1] 0.019911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OK3 A 1 400 400 OK3 OK3 . C 3 HOH A 1 501 14 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 13 HOH HOH . C 3 HOH A 4 504 12 HOH HOH . C 3 HOH A 5 505 18 HOH HOH . C 3 HOH A 6 506 4 HOH HOH . C 3 HOH A 7 507 16 HOH HOH . C 3 HOH A 8 508 23 HOH HOH . C 3 HOH A 9 509 11 HOH HOH . C 3 HOH A 10 510 22 HOH HOH . C 3 HOH A 11 511 36 HOH HOH . C 3 HOH A 12 512 1 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 28 HOH HOH . C 3 HOH A 15 515 10 HOH HOH . C 3 HOH A 16 516 5 HOH HOH . C 3 HOH A 17 517 15 HOH HOH . C 3 HOH A 18 518 6 HOH HOH . C 3 HOH A 19 519 30 HOH HOH . C 3 HOH A 20 520 17 HOH HOH . C 3 HOH A 21 521 19 HOH HOH . C 3 HOH A 22 522 34 HOH HOH . C 3 HOH A 23 523 26 HOH HOH . C 3 HOH A 24 524 33 HOH HOH . C 3 HOH A 25 525 31 HOH HOH . C 3 HOH A 26 526 35 HOH HOH . C 3 HOH A 27 527 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 OK3 . . . B 2 16.934 -0.68 311.876 1 57.18 ? N01 OK3 400 A 1 HETATM 2 C C02 OK3 . . . B 2 16.547 -1.224 310.608 1 55.57 ? C02 OK3 400 A 1 HETATM 3 C C03 OK3 . . . B 2 16.008 -0.09 309.713 1 52.41 ? C03 OK3 400 A 1 HETATM 4 C C04 OK3 . . . B 2 16.882 0.691 309.013 1 49.7 ? C04 OK3 400 A 1 HETATM 5 C C05 OK3 . . . B 2 16.394 1.72 308.204 1 48.07 ? C05 OK3 400 A 1 HETATM 6 C C06 OK3 . . . B 2 15.03 1.949 308.105 1 48.13 ? C06 OK3 400 A 1 HETATM 7 C C07 OK3 . . . B 2 14.148 1.157 308.82 1 50.39 ? C07 OK3 400 A 1 HETATM 8 C C08 OK3 . . . B 2 14.629 0.139 309.622 1 52.43 ? C08 OK3 400 A 1 HETATM 9 C C09 OK3 . . . B 2 14.492 3.115 307.186 1 45.9 ? C09 OK3 400 A 1 HETATM 10 O O10 OK3 . . . B 2 13.374 3.289 307.079 1 45.79 ? O10 OK3 400 A 1 HETATM 11 N N11 OK3 . . . B 2 15.443 3.988 306.46 1 44.51 ? N11 OK3 400 A 1 HETATM 12 C C12 OK3 . . . B 2 14.937 5.099 305.596 1 43.05 ? C12 OK3 400 A 1 HETATM 13 C C13 OK3 . . . B 2 14.465 6.167 306.544 1 44.52 ? C13 OK3 400 A 1 HETATM 14 C C14 OK3 . . . B 2 15.712 6.756 307.265 1 44.54 ? C14 OK3 400 A 1 HETATM 15 C C15 OK3 . . . B 2 16.875 6.894 306.528 1 42.74 ? C15 OK3 400 A 1 HETATM 16 O O16 OK3 . . . B 2 16.926 6.533 305.111 1 40.34 ? O16 OK3 400 A 1 HETATM 17 B B17 OK3 . . . B 2 16.098 5.545 304.658 1 42.84 ? B17 OK3 400 A 1 HETATM 18 O O18 OK3 . . . B 2 16.859 4.433 304.396 1 43.39 ? O18 OK3 400 A 1 HETATM 19 C C20 OK3 . . . B 2 18.044 7.426 307.135 1 44.03 ? C20 OK3 400 A 1 HETATM 20 C C21 OK3 . . . B 2 18.019 7.783 308.488 1 45.36 ? C21 OK3 400 A 1 HETATM 21 C C22 OK3 . . . B 2 16.836 7.628 309.241 1 46.29 ? C22 OK3 400 A 1 HETATM 22 C C23 OK3 . . . B 2 15.685 7.11 308.64 1 45.45 ? C23 OK3 400 A 1 HETATM 23 C C24 OK3 . . . B 2 19.335 7.593 306.307 1 43.29 ? C24 OK3 400 A 1 HETATM 24 O O25 OK3 . . . B 2 19.721 8.737 305.947 1 44.07 ? O25 OK3 400 A 1 HETATM 25 O O26 OK3 . . . B 2 20.011 6.574 305.986 1 43.02 ? O26 OK3 400 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #