data_5J9A # _model_server_result.job_id 1m8uboD1dNadmH_hCN6D9A _model_server_result.datetime_utc '2024-11-29 04:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5J9A # _exptl.entry_id 5J9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J9A _cell.length_a 66.038 _cell.length_b 72.047 _cell.length_c 80.237 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1 NO3 . A NO3 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc2 C MG MG . A MG 402 1_555 E O1B ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 C MG MG . A MG 402 1_555 E O1A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 C MG MG . A MG 402 1_555 F O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 57 n n N H ARG sing 58 n n N H2 ARG sing 59 n n CA C ARG sing 60 n n CA CB ARG sing 61 n n CA HA ARG sing 62 n n C O ARG doub 63 n n C OXT ARG sing 64 n n CB CG ARG sing 65 n n CB HB2 ARG sing 66 n n CB HB3 ARG sing 67 n n CG CD ARG sing 68 n n CG HG2 ARG sing 69 n n CG HG3 ARG sing 70 n n CD NE ARG sing 71 n n CD HD2 ARG sing 72 n n CD HD3 ARG sing 73 n n NE CZ ARG sing 74 n n NE HE ARG sing 75 n n CZ NH1 ARG sing 76 n n CZ NH2 ARG doub 77 n n NH1 HH11 ARG sing 78 n n NH1 HH12 ARG sing 79 n n NH2 HH21 ARG sing 80 n n NH2 HH22 ARG sing 81 n n OXT HXT ARG sing 82 n n # _atom_sites.entry_id 5J9A _atom_sites.fract_transf_matrix[1][1] 0.015143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 401 405 NO3 NO3 . C 3 MG A 1 402 408 MG MG . D 4 ARG A 1 403 403 ARG ARG . E 5 ADP A 1 404 400 ADP ADP . F 6 HOH A 1 501 145 HOH HOH . F 6 HOH A 2 502 113 HOH HOH . F 6 HOH A 3 503 92 HOH HOH . F 6 HOH A 4 504 107 HOH HOH . F 6 HOH A 5 505 86 HOH HOH . F 6 HOH A 6 506 39 HOH HOH . F 6 HOH A 7 507 90 HOH HOH . F 6 HOH A 8 508 74 HOH HOH . F 6 HOH A 9 509 5 HOH HOH . F 6 HOH A 10 510 41 HOH HOH . F 6 HOH A 11 511 140 HOH HOH . F 6 HOH A 12 512 51 HOH HOH . F 6 HOH A 13 513 50 HOH HOH . F 6 HOH A 14 514 105 HOH HOH . F 6 HOH A 15 515 34 HOH HOH . F 6 HOH A 16 516 139 HOH HOH . F 6 HOH A 17 517 114 HOH HOH . F 6 HOH A 18 518 146 HOH HOH . F 6 HOH A 19 519 27 HOH HOH . F 6 HOH A 20 520 75 HOH HOH . F 6 HOH A 21 521 35 HOH HOH . F 6 HOH A 22 522 59 HOH HOH . F 6 HOH A 23 523 87 HOH HOH . F 6 HOH A 24 524 95 HOH HOH . F 6 HOH A 25 525 149 HOH HOH . F 6 HOH A 26 526 99 HOH HOH . F 6 HOH A 27 527 4 HOH HOH . F 6 HOH A 28 528 80 HOH HOH . F 6 HOH A 29 529 15 HOH HOH . F 6 HOH A 30 530 81 HOH HOH . F 6 HOH A 31 531 43 HOH HOH . F 6 HOH A 32 532 31 HOH HOH . F 6 HOH A 33 533 21 HOH HOH . F 6 HOH A 34 534 112 HOH HOH . F 6 HOH A 35 535 66 HOH HOH . F 6 HOH A 36 536 131 HOH HOH . F 6 HOH A 37 537 147 HOH HOH . F 6 HOH A 38 538 28 HOH HOH . F 6 HOH A 39 539 1 HOH HOH . F 6 HOH A 40 540 54 HOH HOH . F 6 HOH A 41 541 37 HOH HOH . F 6 HOH A 42 542 136 HOH HOH . F 6 HOH A 43 543 118 HOH HOH . F 6 HOH A 44 544 47 HOH HOH . F 6 HOH A 45 545 2 HOH HOH . F 6 HOH A 46 546 103 HOH HOH . F 6 HOH A 47 547 68 HOH HOH . F 6 HOH A 48 548 61 HOH HOH . F 6 HOH A 49 549 58 HOH HOH . F 6 HOH A 50 550 18 HOH HOH . F 6 HOH A 51 551 141 HOH HOH . F 6 HOH A 52 552 19 HOH HOH . F 6 HOH A 53 553 26 HOH HOH . F 6 HOH A 54 554 60 HOH HOH . F 6 HOH A 55 555 69 HOH HOH . F 6 HOH A 56 556 42 HOH HOH . F 6 HOH A 57 557 7 HOH HOH . F 6 HOH A 58 558 65 HOH HOH . F 6 HOH A 59 559 67 HOH HOH . F 6 HOH A 60 560 71 HOH HOH . F 6 HOH A 61 561 49 HOH HOH . F 6 HOH A 62 562 22 HOH HOH . F 6 HOH A 63 563 79 HOH HOH . F 6 HOH A 64 564 150 HOH HOH . F 6 HOH A 65 565 97 HOH HOH . F 6 HOH A 66 566 76 HOH HOH . F 6 HOH A 67 567 88 HOH HOH . F 6 HOH A 68 568 127 HOH HOH . F 6 HOH A 69 569 33 HOH HOH . F 6 HOH A 70 570 56 HOH HOH . F 6 HOH A 71 571 3 HOH HOH . F 6 HOH A 72 572 78 HOH HOH . F 6 HOH A 73 573 6 HOH HOH . F 6 HOH A 74 574 72 HOH HOH . F 6 HOH A 75 575 143 HOH HOH . F 6 HOH A 76 576 40 HOH HOH . F 6 HOH A 77 577 83 HOH HOH . F 6 HOH A 78 578 117 HOH HOH . F 6 HOH A 79 579 106 HOH HOH . F 6 HOH A 80 580 64 HOH HOH . F 6 HOH A 81 581 20 HOH HOH . F 6 HOH A 82 582 8 HOH HOH . F 6 HOH A 83 583 77 HOH HOH . F 6 HOH A 84 584 10 HOH HOH . F 6 HOH A 85 585 13 HOH HOH . F 6 HOH A 86 586 44 HOH HOH . F 6 HOH A 87 587 9 HOH HOH . F 6 HOH A 88 588 115 HOH HOH . F 6 HOH A 89 589 29 HOH HOH . F 6 HOH A 90 590 25 HOH HOH . F 6 HOH A 91 591 132 HOH HOH . F 6 HOH A 92 592 98 HOH HOH . F 6 HOH A 93 593 30 HOH HOH . F 6 HOH A 94 594 129 HOH HOH . F 6 HOH A 95 595 93 HOH HOH . F 6 HOH A 96 596 11 HOH HOH . F 6 HOH A 97 597 82 HOH HOH . F 6 HOH A 98 598 12 HOH HOH . F 6 HOH A 99 599 73 HOH HOH . F 6 HOH A 100 600 32 HOH HOH . F 6 HOH A 101 601 45 HOH HOH . F 6 HOH A 102 602 24 HOH HOH . F 6 HOH A 103 603 17 HOH HOH . F 6 HOH A 104 604 142 HOH HOH . F 6 HOH A 105 605 89 HOH HOH . F 6 HOH A 106 606 91 HOH HOH . F 6 HOH A 107 607 101 HOH HOH . F 6 HOH A 108 608 144 HOH HOH . F 6 HOH A 109 609 53 HOH HOH . F 6 HOH A 110 610 16 HOH HOH . F 6 HOH A 111 611 134 HOH HOH . F 6 HOH A 112 612 109 HOH HOH . F 6 HOH A 113 613 128 HOH HOH . F 6 HOH A 114 614 62 HOH HOH . F 6 HOH A 115 615 133 HOH HOH . F 6 HOH A 116 616 138 HOH HOH . F 6 HOH A 117 617 57 HOH HOH . F 6 HOH A 118 618 70 HOH HOH . F 6 HOH A 119 619 14 HOH HOH . F 6 HOH A 120 620 48 HOH HOH . F 6 HOH A 121 621 121 HOH HOH . F 6 HOH A 122 622 104 HOH HOH . F 6 HOH A 123 623 46 HOH HOH . F 6 HOH A 124 624 36 HOH HOH . F 6 HOH A 125 625 100 HOH HOH . F 6 HOH A 126 626 122 HOH HOH . F 6 HOH A 127 627 116 HOH HOH . F 6 HOH A 128 628 137 HOH HOH . F 6 HOH A 129 629 119 HOH HOH . F 6 HOH A 130 630 126 HOH HOH . F 6 HOH A 131 631 94 HOH HOH . F 6 HOH A 132 632 23 HOH HOH . F 6 HOH A 133 633 148 HOH HOH . F 6 HOH A 134 634 52 HOH HOH . F 6 HOH A 135 635 125 HOH HOH . F 6 HOH A 136 636 111 HOH HOH . F 6 HOH A 137 637 85 HOH HOH . F 6 HOH A 138 638 151 HOH HOH . F 6 HOH A 139 639 123 HOH HOH . F 6 HOH A 140 640 102 HOH HOH . F 6 HOH A 141 641 124 HOH HOH . F 6 HOH A 142 642 135 HOH HOH . F 6 HOH A 143 643 55 HOH HOH . F 6 HOH A 144 644 38 HOH HOH . F 6 HOH A 145 645 108 HOH HOH . F 6 HOH A 146 646 96 HOH HOH . F 6 HOH A 147 647 84 HOH HOH . F 6 HOH A 148 648 130 HOH HOH . F 6 HOH A 149 649 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . D 4 33.631 5.527 40.422 1 30.68 ? N ARG 403 A 1 HETATM 2 C CA ARG . . . D 4 33.136 6.502 41.381 1 33.37 ? CA ARG 403 A 1 HETATM 3 C C ARG . . . D 4 33.63 6.104 42.779 1 36.77 ? C ARG 403 A 1 HETATM 4 O O ARG . . . D 4 34.16 4.999 42.981 1 36.22 ? O ARG 403 A 1 HETATM 5 C CB ARG . . . D 4 31.597 6.606 41.345 1 30.43 ? CB ARG 403 A 1 HETATM 6 C CG ARG . . . D 4 30.798 5.3 41.656 1 29.78 ? CG ARG 403 A 1 HETATM 7 C CD ARG . . . D 4 29.296 5.602 41.959 1 29.28 ? CD ARG 403 A 1 HETATM 8 N NE ARG . . . D 4 28.897 6.665 41.013 1 27.89 ? NE ARG 403 A 1 HETATM 9 C CZ ARG . . . D 4 28.476 6.44 39.778 1 29.16 ? CZ ARG 403 A 1 HETATM 10 N NH1 ARG . . . D 4 28.393 5.194 39.326 1 27.51 ? NH1 ARG 403 A 1 HETATM 11 N NH2 ARG . . . D 4 28.228 7.486 38.963 1 26.87 ? NH2 ARG 403 A 1 HETATM 12 O OXT ARG . . . D 4 33.543 6.894 43.724 1 36.98 ? OXT ARG 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #