data_5J9F
#
_model_server_result.job_id            3d-6M_3ye8mscWuUI4OM5g 
_model_server_result.datetime_utc      '2024-11-22 19:45:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    5J9F 
#
_exptl.entry_id    5J9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.16 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCINAMIDE RIBONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5J9F 
_cell.length_a            75.386 
_cell.length_b            75.386 
_cell.length_c            101.293 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H13 N2 O8 P -2' 
_chem_comp.formula_weight    284.16 
_chem_comp.id                GAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCINAMIDE RIBONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 GAR sing 139 n n 
C1 C2 GAR sing 140 n n 
C1 C5 GAR sing 141 n n 
C1 H1 GAR sing 142 n n 
O6 HO6 GAR sing 143 n n 
C2 O8 GAR sing 144 n n 
C2 C3 GAR sing 145 n n 
C2 H2 GAR sing 146 n n 
O8 HO8 GAR sing 147 n n 
C3 O4 GAR sing 148 n n 
C3 N19 GAR sing 149 n n 
C3 H3 GAR sing 150 n n 
O4 C5 GAR sing 151 n n 
C5 C10 GAR sing 152 n n 
C5 H5 GAR sing 153 n n 
C10 O12 GAR sing 154 n n 
C10 H101 GAR sing 155 n n 
C10 H102 GAR sing 156 n n 
O12 P15 GAR sing 157 n n 
N19 C21 GAR sing 158 n n 
N19 H19 GAR sing 159 n n 
C21 O22 GAR doub 160 n n 
C21 C23 GAR sing 161 n n 
C23 N24 GAR sing 162 n n 
C23 H231 GAR sing 163 n n 
C23 H232 GAR sing 164 n n 
N24 H241 GAR sing 165 n n 
N24 H242 GAR sing 166 n n 
P15 O16 GAR doub 167 n n 
P15 O17 GAR sing 168 n n 
P15 O18 GAR sing 169 n n 
#
_atom_sites.entry_id                     5J9F 
_atom_sites.fract_transf_matrix[1][1]    0.013265 
_atom_sites.fract_transf_matrix[1][2]    0.007659 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015317 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAR A 1 1101 1101 GAR GAR . 
C 3 83A A 1 1102 1102 83A 83A . 
D 4 HOH A 1 1201 1201 HOH HOH . 
D 4 HOH A 2 1202 1202 HOH HOH . 
D 4 HOH A 3 1203 1203 HOH HOH . 
D 4 HOH A 4 1204 1204 HOH HOH . 
D 4 HOH A 5 1205 1205 HOH HOH . 
D 4 HOH A 6 1206 1206 HOH HOH . 
D 4 HOH A 7 1207 1207 HOH HOH . 
D 4 HOH A 8 1208 1208 HOH HOH . 
D 4 HOH A 9 1209 1209 HOH HOH . 
D 4 HOH A 10 1210 1210 HOH HOH . 
D 4 HOH A 11 1211 1211 HOH HOH . 
D 4 HOH A 12 1212 1212 HOH HOH . 
D 4 HOH A 13 1213 1213 HOH HOH . 
D 4 HOH A 14 1214 1214 HOH HOH . 
D 4 HOH A 15 1215 1215 HOH HOH . 
D 4 HOH A 16 1216 1216 HOH HOH . 
D 4 HOH A 17 1217 1217 HOH HOH . 
D 4 HOH A 18 1218 1218 HOH HOH . 
D 4 HOH A 19 1219 1219 HOH HOH . 
D 4 HOH A 20 1220 1220 HOH HOH . 
D 4 HOH A 21 1221 1221 HOH HOH . 
D 4 HOH A 22 1222 1222 HOH HOH . 
D 4 HOH A 23 1223 1223 HOH HOH . 
D 4 HOH A 24 1224 1224 HOH HOH . 
D 4 HOH A 25 1225 1225 HOH HOH . 
D 4 HOH A 26 1226 1226 HOH HOH . 
D 4 HOH A 27 1227 1227 HOH HOH . 
D 4 HOH A 28 1228 1228 HOH HOH . 
D 4 HOH A 29 1229 1229 HOH HOH . 
D 4 HOH A 30 1230 1230 HOH HOH . 
D 4 HOH A 31 1231 1231 HOH HOH . 
D 4 HOH A 32 1232 1232 HOH HOH . 
D 4 HOH A 33 1233 1233 HOH HOH . 
D 4 HOH A 34 1234 1234 HOH HOH . 
D 4 HOH A 35 1235 1235 HOH HOH . 
D 4 HOH A 36 1236 1236 HOH HOH . 
D 4 HOH A 37 1237 1237 HOH HOH . 
D 4 HOH A 38 1238 1238 HOH HOH . 
D 4 HOH A 39 1239 1239 HOH HOH . 
D 4 HOH A 40 1240 1240 HOH HOH . 
D 4 HOH A 41 1241 1241 HOH HOH . 
D 4 HOH A 42 1242 1242 HOH HOH . 
D 4 HOH A 43 1243 1243 HOH HOH . 
D 4 HOH A 44 1244 1244 HOH HOH . 
D 4 HOH A 45 1245 1245 HOH HOH . 
D 4 HOH A 46 1246 1246 HOH HOH . 
D 4 HOH A 47 1247 1247 HOH HOH . 
D 4 HOH A 48 1248 1248 HOH HOH . 
D 4 HOH A 49 1249 1249 HOH HOH . 
D 4 HOH A 50 1250 1250 HOH HOH . 
D 4 HOH A 51 1251 1251 HOH HOH . 
D 4 HOH A 52 1252 1252 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAR . . . B 2 31.781 -21.281 -15.066 1 30.96 ? C1 GAR 1101 A 1 
HETATM 2 O O6 GAR . . . B 2 31.022 -22.126 -14.227 1 26.68 ? O6 GAR 1101 A 1 
HETATM 3 C C2 GAR . . . B 2 30.798 -20.691 -16.055 1 30.88 ? C2 GAR 1101 A 1 
HETATM 4 O O8 GAR . . . B 2 29.815 -21.609 -16.525 1 31.9 ? O8 GAR 1101 A 1 
HETATM 5 C C3 GAR . . . B 2 30.169 -19.541 -15.283 1 29.1 ? C3 GAR 1101 A 1 
HETATM 6 O O4 GAR . . . B 2 31.305 -19.02 -14.612 1 27.21 ? O4 GAR 1101 A 1 
HETATM 7 C C5 GAR . . . B 2 32.238 -20.056 -14.286 1 33.01 ? C5 GAR 1101 A 1 
HETATM 8 C C10 GAR . . . B 2 33.609 -19.624 -14.783 1 28.64 ? C10 GAR 1101 A 1 
HETATM 9 O O12 GAR . . . B 2 34.582 -20.592 -14.373 1 31.05 ? O12 GAR 1101 A 1 
HETATM 10 N N19 GAR . . . B 2 29.658 -18.556 -16.229 1 32.55 ? N19 GAR 1101 A 1 
HETATM 11 C C21 GAR . . . B 2 28.541 -17.889 -15.984 1 36.44 ? C21 GAR 1101 A 1 
HETATM 12 O O22 GAR . . . B 2 27.945 -17.945 -14.902 1 32.89 ? O22 GAR 1101 A 1 
HETATM 13 C C23 GAR . . . B 2 28.039 -17.043 -17.144 1 37.07 ? C23 GAR 1101 A 1 
HETATM 14 N N24 GAR . . . B 2 26.873 -16.258 -16.784 1 40.12 ? N24 GAR 1101 A 1 
HETATM 15 P P15 GAR . . . B 2 36.078 -20.652 -15.019 1 29.24 ? P15 GAR 1101 A 1 
HETATM 16 O O16 GAR . . . B 2 35.888 -21.175 -16.45 1 29.69 ? O16 GAR 1101 A 1 
HETATM 17 O O17 GAR . . . B 2 36.796 -21.634 -14.113 1 30.12 ? O17 GAR 1101 A 1 
HETATM 18 O O18 GAR . . . B 2 36.616 -19.225 -14.991 1 25.29 ? O18 GAR 1101 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           18 
#