data_5J9F # _model_server_result.job_id bnmX1gjtc1l1EOiOfUB8uQ _model_server_result.datetime_utc '2024-11-22 19:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5J9F # _exptl.entry_id 5J9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-{[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzene-1-carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J9F _cell.length_a 75.386 _cell.length_b 75.386 _cell.length_c 101.293 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N6 O6' _chem_comp.formula_weight 442.425 _chem_comp.id 83A _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-{[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzene-1-carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'antifolate AGF183' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C3 83A sing 1 n n N1 C3 83A sing 2 n n N1 C2 83A sing 3 n n C3 N2 83A doub 4 n n O1 C2 83A doub 5 n n C2 C1 83A sing 6 n n N2 C4 83A sing 7 n n C1 C4 83A doub 8 n y C1 C6 83A sing 9 n y C4 N4 83A sing 10 n y C6 C5 83A doub 11 n y N4 C5 83A sing 12 n y C5 C7 83A sing 13 n n C7 C8 83A sing 14 n n C8 N5 83A sing 15 n n O6 C20 83A doub 16 n n N5 C9 83A sing 17 n n C20 O5 83A sing 18 n n C20 C19 83A sing 19 n n C9 C10 83A doub 20 n y C9 C14 83A sing 21 n y C10 C11 83A sing 22 n y C19 C18 83A sing 23 n n C14 C13 83A doub 24 n y C11 C12 83A doub 25 n y C13 C12 83A sing 26 n y C18 C16 83A sing 27 n n C12 C15 83A sing 28 n n N6 C15 83A sing 29 n n N6 C16 83A sing 30 n n C15 O2 83A doub 31 n n C16 C17 83A sing 32 n n C17 O3 83A doub 33 n n C17 O4 83A sing 34 n n N1 H1 83A sing 35 n n N3 H2 83A sing 36 n n N3 H3 83A sing 37 n n N4 H4 83A sing 38 n n O4 H5 83A sing 39 n n N5 H6 83A sing 40 n n O5 H7 83A sing 41 n n C6 H8 83A sing 42 n n N6 H9 83A sing 43 n n C7 H10 83A sing 44 n n C7 H11 83A sing 45 n n C8 H12 83A sing 46 n n C8 H13 83A sing 47 n n C10 H14 83A sing 48 n n C11 H15 83A sing 49 n n C13 H16 83A sing 50 n n C14 H17 83A sing 51 n n C16 H18 83A sing 52 n n C18 H19 83A sing 53 n n C18 H20 83A sing 54 n n C19 H21 83A sing 55 n n C19 H22 83A sing 56 n n # _atom_sites.entry_id 5J9F _atom_sites.fract_transf_matrix[1][1] 0.013265 _atom_sites.fract_transf_matrix[1][2] 0.007659 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1101 GAR GAR . C 3 83A A 1 1102 1102 83A 83A . D 4 HOH A 1 1201 1201 HOH HOH . D 4 HOH A 2 1202 1202 HOH HOH . D 4 HOH A 3 1203 1203 HOH HOH . D 4 HOH A 4 1204 1204 HOH HOH . D 4 HOH A 5 1205 1205 HOH HOH . D 4 HOH A 6 1206 1206 HOH HOH . D 4 HOH A 7 1207 1207 HOH HOH . D 4 HOH A 8 1208 1208 HOH HOH . D 4 HOH A 9 1209 1209 HOH HOH . D 4 HOH A 10 1210 1210 HOH HOH . D 4 HOH A 11 1211 1211 HOH HOH . D 4 HOH A 12 1212 1212 HOH HOH . D 4 HOH A 13 1213 1213 HOH HOH . D 4 HOH A 14 1214 1214 HOH HOH . D 4 HOH A 15 1215 1215 HOH HOH . D 4 HOH A 16 1216 1216 HOH HOH . D 4 HOH A 17 1217 1217 HOH HOH . D 4 HOH A 18 1218 1218 HOH HOH . D 4 HOH A 19 1219 1219 HOH HOH . D 4 HOH A 20 1220 1220 HOH HOH . D 4 HOH A 21 1221 1221 HOH HOH . D 4 HOH A 22 1222 1222 HOH HOH . D 4 HOH A 23 1223 1223 HOH HOH . D 4 HOH A 24 1224 1224 HOH HOH . D 4 HOH A 25 1225 1225 HOH HOH . D 4 HOH A 26 1226 1226 HOH HOH . D 4 HOH A 27 1227 1227 HOH HOH . D 4 HOH A 28 1228 1228 HOH HOH . D 4 HOH A 29 1229 1229 HOH HOH . D 4 HOH A 30 1230 1230 HOH HOH . D 4 HOH A 31 1231 1231 HOH HOH . D 4 HOH A 32 1232 1232 HOH HOH . D 4 HOH A 33 1233 1233 HOH HOH . D 4 HOH A 34 1234 1234 HOH HOH . D 4 HOH A 35 1235 1235 HOH HOH . D 4 HOH A 36 1236 1236 HOH HOH . D 4 HOH A 37 1237 1237 HOH HOH . D 4 HOH A 38 1238 1238 HOH HOH . D 4 HOH A 39 1239 1239 HOH HOH . D 4 HOH A 40 1240 1240 HOH HOH . D 4 HOH A 41 1241 1241 HOH HOH . D 4 HOH A 42 1242 1242 HOH HOH . D 4 HOH A 43 1243 1243 HOH HOH . D 4 HOH A 44 1244 1244 HOH HOH . D 4 HOH A 45 1245 1245 HOH HOH . D 4 HOH A 46 1246 1246 HOH HOH . D 4 HOH A 47 1247 1247 HOH HOH . D 4 HOH A 48 1248 1248 HOH HOH . D 4 HOH A 49 1249 1249 HOH HOH . D 4 HOH A 50 1250 1250 HOH HOH . D 4 HOH A 51 1251 1251 HOH HOH . D 4 HOH A 52 1252 1252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 83A . . . C 3 25.491 -13.25 -23.239 1 25.95 ? C1 83A 1102 A 1 HETATM 2 N N1 83A . . . C 3 23.999 -12.277 -24.783 1 30.17 ? N1 83A 1102 A 1 HETATM 3 O O1 83A . . . C 3 23.761 -14.448 -24.253 1 29.2 ? O1 83A 1102 A 1 HETATM 4 C C2 83A . . . C 3 24.396 -13.372 -24.102 1 31.42 ? C2 83A 1102 A 1 HETATM 5 N N2 83A . . . C 3 25.666 -10.947 -23.855 1 28.52 ? N2 83A 1102 A 1 HETATM 6 O O2 83A . . . C 3 24.375 -9.774 -15.025 1 62.17 ? O2 83A 1102 A 1 HETATM 7 C C3 83A . . . C 3 24.603 -11.09 -24.653 1 31.9 ? C3 83A 1102 A 1 HETATM 8 N N3 83A . . . C 3 24.141 -9.982 -25.403 1 30.57 ? N3 83A 1102 A 1 HETATM 9 O O3 83A . . . C 3 26.282 -5.481 -15.954 1 69.46 ? O3 83A 1102 A 1 HETATM 10 C C4 83A . . . C 3 26.115 -11.978 -23.148 1 27.18 ? C4 83A 1102 A 1 HETATM 11 N N4 83A . . . C 3 27.136 -12.062 -22.289 1 28.54 ? N4 83A 1102 A 1 HETATM 12 O O4 83A . . . C 3 27.335 -6.857 -17.335 1 59.28 ? O4 83A 1102 A 1 HETATM 13 C C5 83A . . . C 3 27.287 -13.292 -21.755 1 32.23 ? C5 83A 1102 A 1 HETATM 14 N N5 83A . . . C 3 26.51 -14.254 -19.218 1 44.19 ? N5 83A 1102 A 1 HETATM 15 O O5 83A . . . C 3 28.065 -6.878 -11.281 1 93.78 ? O5 83A 1102 A 1 HETATM 16 C C6 83A . . . C 3 26.252 -14.021 -22.357 1 26.77 ? C6 83A 1102 A 1 HETATM 17 N N6 83A . . . C 3 26.437 -8.959 -15.852 1 70.08 ? N6 83A 1102 A 1 HETATM 18 O O6 83A . . . C 3 29.733 -8.207 -11.783 1 92.63 ? O6 83A 1102 A 1 HETATM 19 C C7 83A . . . C 3 28.366 -13.663 -20.765 1 30.34 ? C7 83A 1102 A 1 HETATM 20 C C8 83A . . . C 3 27.861 -14.614 -19.683 1 41.23 ? C8 83A 1102 A 1 HETATM 21 C C9 83A . . . C 3 26.169 -13.183 -18.346 1 44.75 ? C9 83A 1102 A 1 HETATM 22 C C10 83A . . . C 3 24.834 -12.927 -18.009 1 43.53 ? C10 83A 1102 A 1 HETATM 23 C C11 83A . . . C 3 24.537 -11.864 -17.162 1 48.9 ? C11 83A 1102 A 1 HETATM 24 C C12 83A . . . C 3 25.589 -11.104 -16.657 1 50.23 ? C12 83A 1102 A 1 HETATM 25 C C13 83A . . . C 3 26.911 -11.376 -16.996 1 42.18 ? C13 83A 1102 A 1 HETATM 26 C C14 83A . . . C 3 27.21 -12.429 -17.841 1 45.61 ? C14 83A 1102 A 1 HETATM 27 C C15 83A . . . C 3 25.366 -9.901 -15.734 1 61.44 ? C15 83A 1102 A 1 HETATM 28 C C16 83A . . . C 3 26.629 -7.721 -15.186 1 72.45 ? C16 83A 1102 A 1 HETATM 29 C C17 83A . . . C 3 26.754 -6.626 -16.222 1 66.89 ? C17 83A 1102 A 1 HETATM 30 C C18 83A . . . C 3 27.926 -7.782 -14.395 1 79.29 ? C18 83A 1102 A 1 HETATM 31 C C19 83A . . . C 3 27.705 -8.48 -13.065 1 85.7 ? C19 83A 1102 A 1 HETATM 32 C C20 83A . . . C 3 28.546 -7.818 -11.983 1 91.99 ? C20 83A 1102 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #