data_5J9L # _model_server_result.job_id XMAVrOpbyrWg0IbcpcO8Qg _model_server_result.datetime_utc '2024-11-14 18:58:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5J9L # _exptl.entry_id 5J9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.538 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-((2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J9L _cell.length_a 58.208 _cell.length_b 133.407 _cell.length_c 144.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H27 N7 O2' _chem_comp.formula_weight 469.538 _chem_comp.id 6HF _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-((2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CPT-1691;N-{4-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy]phenyl}prop-2-enamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C30 6HF doub 1 n n C30 C29 6HF sing 2 n n C01 N02 6HF sing 3 n n C29 O32 6HF doub 4 n n C29 N28 6HF sing 5 n n N28 C27 6HF sing 6 n n N02 C05 6HF sing 7 n n N02 C03 6HF sing 8 n n C05 C06 6HF sing 9 n n C06 N07 6HF sing 10 n n C03 C04 6HF sing 11 n n C27 C33 6HF doub 12 n y C27 C26 6HF sing 13 n y C04 N07 6HF sing 14 n n C33 C34 6HF sing 15 n y N07 C08 6HF sing 16 n n C26 C25 6HF doub 17 n y C11 C08 6HF doub 18 n y C11 C12 6HF sing 19 n y C08 C09 6HF sing 20 n y C12 C13 6HF doub 21 n y C34 C24 6HF doub 22 n y C09 C10 6HF doub 23 n y C25 C24 6HF sing 24 n y C13 C10 6HF sing 25 n y C13 N14 6HF sing 26 n n C24 O23 6HF sing 27 n n N14 C15 6HF sing 28 n n N35 C15 6HF doub 29 n y N35 C22 6HF sing 30 n y C15 N16 6HF sing 31 n y O23 C22 6HF sing 32 n n C22 C18 6HF doub 33 n y N16 C17 6HF doub 34 n y C18 C17 6HF sing 35 n y C18 C19 6HF sing 36 n y C17 N21 6HF sing 37 n y C19 C20 6HF doub 38 n y N21 C20 6HF sing 39 n y C01 H012 6HF sing 40 n n C01 H011 6HF sing 41 n n C01 H013 6HF sing 42 n n C03 H032 6HF sing 43 n n C03 H031 6HF sing 44 n n C04 H042 6HF sing 45 n n C04 H041 6HF sing 46 n n C05 H051 6HF sing 47 n n C05 H052 6HF sing 48 n n C06 H062 6HF sing 49 n n C06 H061 6HF sing 50 n n C09 H091 6HF sing 51 n n C10 H101 6HF sing 52 n n C11 H111 6HF sing 53 n n C12 H121 6HF sing 54 n n N14 H141 6HF sing 55 n n C19 H191 6HF sing 56 n n C20 H201 6HF sing 57 n n N21 H211 6HF sing 58 n n C25 H251 6HF sing 59 n n C26 H261 6HF sing 60 n n N28 H281 6HF sing 61 n n C30 H301 6HF sing 62 n n C31 H312 6HF sing 63 n n C31 H311 6HF sing 64 n n C33 H331 6HF sing 65 n n C34 H341 6HF sing 66 n n # _atom_sites.entry_id 5J9L _atom_sites.fract_transf_matrix[1][1] 0.01718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6HF A 1 501 1 6HF CPT . C 3 HOH A 1 601 3 HOH HOH . C 3 HOH A 2 602 9 HOH HOH . C 3 HOH A 3 603 1 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 2 HOH HOH . C 3 HOH A 6 606 7 HOH HOH . C 3 HOH A 7 607 5 HOH HOH . C 3 HOH A 8 608 6 HOH HOH . C 3 HOH A 9 609 8 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6HF . . . B 2 -22.03 -50.892 -22.23 1 87.4 ? C01 6HF 501 A 1 HETATM 2 N N02 6HF . . . B 2 -21.875 -51.368 -21.027 1 93.07 ? N02 6HF 501 A 1 HETATM 3 C C03 6HF . . . B 2 -22.268 -50.478 -20.061 1 93.82 ? C03 6HF 501 A 1 HETATM 4 C C04 6HF . . . B 2 -21.256 -49.346 -19.826 1 79.16 ? C04 6HF 501 A 1 HETATM 5 C C05 6HF . . . B 2 -20.6 -51.88 -20.813 1 86.49 ? C05 6HF 501 A 1 HETATM 6 C C06 6HF . . . B 2 -19.544 -50.787 -20.585 1 74.26 ? C06 6HF 501 A 1 HETATM 7 N N07 6HF . . . B 2 -19.912 -49.857 -19.538 1 88.81 ? N07 6HF 501 A 1 HETATM 8 C C08 6HF . . . B 2 -18.905 -49.024 -18.845 1 86.91 ? C08 6HF 501 A 1 HETATM 9 C C09 6HF . . . B 2 -19.323 -48.082 -17.869 1 78.76 ? C09 6HF 501 A 1 HETATM 10 C C10 6HF . . . B 2 -18.379 -47.291 -17.203 1 73.13 ? C10 6HF 501 A 1 HETATM 11 C C11 6HF . . . B 2 -17.556 -49.156 -19.14 1 69.76 ? C11 6HF 501 A 1 HETATM 12 C C12 6HF . . . B 2 -16.61 -48.363 -18.477 1 70.11 ? C12 6HF 501 A 1 HETATM 13 C C13 6HF . . . B 2 -17.027 -47.426 -17.501 1 78.52 ? C13 6HF 501 A 1 HETATM 14 N N14 6HF . . . B 2 -16.052 -46.601 -16.809 1 71.31 ? N14 6HF 501 A 1 HETATM 15 C C15 6HF . . . B 2 -14.848 -47.198 -16.224 1 74.75 ? C15 6HF 501 A 1 HETATM 16 N N16 6HF . . . B 2 -14.015 -46.419 -15.533 1 68.13 ? N16 6HF 501 A 1 HETATM 17 C C17 6HF . . . B 2 -12.869 -46.917 -14.966 1 70.36 ? C17 6HF 501 A 1 HETATM 18 C C18 6HF . . . B 2 -12.588 -48.248 -15.125 1 75.59 ? C18 6HF 501 A 1 HETATM 19 C C19 6HF . . . B 2 -11.387 -48.469 -14.455 1 71.96 ? C19 6HF 501 A 1 HETATM 20 C C20 6HF . . . B 2 -10.975 -47.261 -13.911 1 66.87 ? C20 6HF 501 A 1 HETATM 21 N N21 6HF . . . B 2 -11.879 -46.341 -14.228 1 75.05 ? N21 6HF 501 A 1 HETATM 22 C C22 6HF . . . B 2 -13.503 -49.061 -15.886 1 67.52 ? C22 6HF 501 A 1 HETATM 23 O O23 6HF . . . B 2 -13.245 -50.443 -16.053 1 72.51 ? O23 6HF 501 A 1 HETATM 24 C C24 6HF . . . B 2 -13.337 -50.895 -17.391 1 74.61 ? C24 6HF 501 A 1 HETATM 25 C C25 6HF . . . B 2 -14.478 -51.531 -17.828 1 68.8 ? C25 6HF 501 A 1 HETATM 26 C C26 6HF . . . B 2 -14.566 -51.997 -19.149 1 75.12 ? C26 6HF 501 A 1 HETATM 27 C C27 6HF . . . B 2 -13.504 -51.819 -20.02 1 93.48 ? C27 6HF 501 A 1 HETATM 28 N N28 6HF . . . B 2 -13.571 -52.309 -21.409 1 82.55 ? N28 6HF 501 A 1 HETATM 29 C C29 6HF . . . B 2 -14.84 -52.283 -22.197 1 88.32 ? C29 6HF 501 A 1 HETATM 30 C C30 6HF . . . B 2 -14.832 -52.822 -23.648 1 83.1 ? C30 6HF 501 A 1 HETATM 31 C C31 6HF . . . B 2 -15.978 -53.055 -24.291 1 79.69 ? C31 6HF 501 A 1 HETATM 32 O O32 6HF . . . B 2 -15.853 -51.855 -21.717 1 87.18 ? O32 6HF 501 A 1 HETATM 33 C C33 6HF . . . B 2 -12.358 -51.194 -19.578 1 90.68 ? C33 6HF 501 A 1 HETATM 34 C C34 6HF . . . B 2 -12.271 -50.729 -18.258 1 82.18 ? C34 6HF 501 A 1 HETATM 35 N N35 6HF . . . B 2 -14.602 -48.501 -16.397 1 72.2 ? N35 6HF 501 A 1 HETATM 36 H H012 6HF . . . B 2 -21.75 -51.556 -22.879 1 104.88 ? H012 6HF 501 A 1 HETATM 37 H H011 6HF . . . B 2 -22.964 -50.674 -22.374 1 104.88 ? H011 6HF 501 A 1 HETATM 38 H H013 6HF . . . B 2 -21.491 -50.092 -22.333 1 104.88 ? H013 6HF 501 A 1 HETATM 39 H H032 6HF . . . B 2 -23.115 -50.086 -20.327 1 112.59 ? H032 6HF 501 A 1 HETATM 40 H H031 6HF . . . B 2 -22.391 -50.961 -19.229 1 112.59 ? H031 6HF 501 A 1 HETATM 41 H H042 6HF . . . B 2 -21.217 -48.789 -20.62 1 94.99 ? H042 6HF 501 A 1 HETATM 42 H H041 6HF . . . B 2 -21.554 -48.809 -19.075 1 94.99 ? H041 6HF 501 A 1 HETATM 43 H H051 6HF . . . B 2 -20.343 -52.404 -21.587 1 103.79 ? H051 6HF 501 A 1 HETATM 44 H H052 6HF . . . B 2 -20.625 -52.456 -20.033 1 103.79 ? H052 6HF 501 A 1 HETATM 45 H H062 6HF . . . B 2 -19.424 -50.293 -21.411 1 89.12 ? H062 6HF 501 A 1 HETATM 46 H H061 6HF . . . B 2 -18.705 -51.211 -20.344 1 89.12 ? H061 6HF 501 A 1 HETATM 47 H H091 6HF . . . B 2 -20.227 -47.993 -17.668 1 94.52 ? H091 6HF 501 A 1 HETATM 48 H H101 6HF . . . B 2 -18.656 -46.675 -16.563 1 87.76 ? H101 6HF 501 A 1 HETATM 49 H H111 6HF . . . B 2 -17.28 -49.772 -19.78 1 83.72 ? H111 6HF 501 A 1 HETATM 50 H H121 6HF . . . B 2 -15.706 -48.454 -18.676 1 84.13 ? H121 6HF 501 A 1 HETATM 51 H H141 6HF . . . B 2 -16.182 -45.753 -16.741 1 85.57 ? H141 6HF 501 A 1 HETATM 52 H H191 6HF . . . B 2 -10.94 -49.282 -14.385 1 86.36 ? H191 6HF 501 A 1 HETATM 53 H H201 6HF . . . B 2 -10.204 -47.121 -13.412 1 80.24 ? H201 6HF 501 A 1 HETATM 54 H H211 6HF . . . B 2 -11.844 -45.512 -14.004 1 90.07 ? H211 6HF 501 A 1 HETATM 55 H H251 6HF . . . B 2 -15.194 -51.65 -17.246 1 82.56 ? H251 6HF 501 A 1 HETATM 56 H H261 6HF . . . B 2 -15.34 -52.422 -19.442 1 90.14 ? H261 6HF 501 A 1 HETATM 57 H H281 6HF . . . B 2 -12.859 -52.624 -21.774 1 99.06 ? H281 6HF 501 A 1 HETATM 58 H H301 6HF . . . B 2 -14.023 -52.986 -24.075 1 99.72 ? H301 6HF 501 A 1 HETATM 59 H H312 6HF . . . B 2 -15.966 -53.379 -25.163 1 95.62 ? H312 6HF 501 A 1 HETATM 60 H H311 6HF . . . B 2 -16.79 -52.892 -23.867 1 95.62 ? H311 6HF 501 A 1 HETATM 61 H H331 6HF . . . B 2 -11.642 -51.076 -20.159 1 108.81 ? H331 6HF 501 A 1 HETATM 62 H H341 6HF . . . B 2 -11.496 -50.305 -17.965 1 98.61 ? H341 6HF 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 62 #