data_5J9N # _model_server_result.job_id Cln8TOZD3naxWrkgJeRsKA _model_server_result.datetime_utc '2024-10-18 15:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5J9N # _exptl.entry_id 5J9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.85 _cell.angle_gamma 90 _cell.entry_id 5J9N _cell.length_a 90.359 _cell.length_b 64.547 _cell.length_c 71.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 156 n n C1 C2 GOL sing 157 n n C1 H11 GOL sing 158 n n C1 H12 GOL sing 159 n n O1 HO1 GOL sing 160 n n C2 O2 GOL sing 161 n n C2 C3 GOL sing 162 n n C2 H2 GOL sing 163 n n O2 HO2 GOL sing 164 n n C3 O3 GOL sing 165 n n C3 H31 GOL sing 166 n n C3 H32 GOL sing 167 n n O3 HO3 GOL sing 168 n n # _atom_sites.entry_id 5J9N _atom_sites.fract_transf_matrix[1][1] 0.011067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 3 GOL GOL . E 3 GOL A 1 404 4 GOL GOL . F 4 6H9 A 1 405 1 6H9 A17 . G 5 HOH A 1 501 8 HOH HOH . G 5 HOH A 2 502 362 HOH HOH . G 5 HOH A 3 503 383 HOH HOH . G 5 HOH A 4 504 336 HOH HOH . G 5 HOH A 5 505 352 HOH HOH . G 5 HOH A 6 506 207 HOH HOH . G 5 HOH A 7 507 337 HOH HOH . G 5 HOH A 8 508 327 HOH HOH . G 5 HOH A 9 509 267 HOH HOH . G 5 HOH A 10 510 87 HOH HOH . G 5 HOH A 11 511 372 HOH HOH . G 5 HOH A 12 512 28 HOH HOH . G 5 HOH A 13 513 27 HOH HOH . G 5 HOH A 14 514 162 HOH HOH . G 5 HOH A 15 515 64 HOH HOH . G 5 HOH A 16 516 223 HOH HOH . G 5 HOH A 17 517 204 HOH HOH . G 5 HOH A 18 518 369 HOH HOH . G 5 HOH A 19 519 120 HOH HOH . G 5 HOH A 20 520 227 HOH HOH . G 5 HOH A 21 521 72 HOH HOH . G 5 HOH A 22 522 41 HOH HOH . G 5 HOH A 23 523 217 HOH HOH . G 5 HOH A 24 524 57 HOH HOH . G 5 HOH A 25 525 59 HOH HOH . G 5 HOH A 26 526 3 HOH HOH . G 5 HOH A 27 527 71 HOH HOH . G 5 HOH A 28 528 12 HOH HOH . G 5 HOH A 29 529 308 HOH HOH . G 5 HOH A 30 530 49 HOH HOH . G 5 HOH A 31 531 135 HOH HOH . G 5 HOH A 32 532 146 HOH HOH . G 5 HOH A 33 533 127 HOH HOH . G 5 HOH A 34 534 268 HOH HOH . G 5 HOH A 35 535 13 HOH HOH . G 5 HOH A 36 536 48 HOH HOH . G 5 HOH A 37 537 14 HOH HOH . G 5 HOH A 38 538 261 HOH HOH . G 5 HOH A 39 539 206 HOH HOH . G 5 HOH A 40 540 334 HOH HOH . G 5 HOH A 41 541 4 HOH HOH . G 5 HOH A 42 542 265 HOH HOH . G 5 HOH A 43 543 21 HOH HOH . G 5 HOH A 44 544 111 HOH HOH . G 5 HOH A 45 545 86 HOH HOH . G 5 HOH A 46 546 9 HOH HOH . G 5 HOH A 47 547 366 HOH HOH . G 5 HOH A 48 548 374 HOH HOH . G 5 HOH A 49 549 106 HOH HOH . G 5 HOH A 50 550 195 HOH HOH . G 5 HOH A 51 551 47 HOH HOH . G 5 HOH A 52 552 61 HOH HOH . G 5 HOH A 53 553 33 HOH HOH . G 5 HOH A 54 554 117 HOH HOH . G 5 HOH A 55 555 368 HOH HOH . G 5 HOH A 56 556 331 HOH HOH . G 5 HOH A 57 557 363 HOH HOH . G 5 HOH A 58 558 178 HOH HOH . G 5 HOH A 59 559 19 HOH HOH . G 5 HOH A 60 560 53 HOH HOH . G 5 HOH A 61 561 45 HOH HOH . G 5 HOH A 62 562 77 HOH HOH . G 5 HOH A 63 563 67 HOH HOH . G 5 HOH A 64 564 10 HOH HOH . G 5 HOH A 65 565 55 HOH HOH . G 5 HOH A 66 566 79 HOH HOH . G 5 HOH A 67 567 39 HOH HOH . G 5 HOH A 68 568 97 HOH HOH . G 5 HOH A 69 569 43 HOH HOH . G 5 HOH A 70 570 174 HOH HOH . G 5 HOH A 71 571 108 HOH HOH . G 5 HOH A 72 572 65 HOH HOH . G 5 HOH A 73 573 6 HOH HOH . G 5 HOH A 74 574 17 HOH HOH . G 5 HOH A 75 575 25 HOH HOH . G 5 HOH A 76 576 203 HOH HOH . G 5 HOH A 77 577 15 HOH HOH . G 5 HOH A 78 578 312 HOH HOH . G 5 HOH A 79 579 350 HOH HOH . G 5 HOH A 80 580 30 HOH HOH . G 5 HOH A 81 581 257 HOH HOH . G 5 HOH A 82 582 31 HOH HOH . G 5 HOH A 83 583 62 HOH HOH . G 5 HOH A 84 584 149 HOH HOH . G 5 HOH A 85 585 16 HOH HOH . G 5 HOH A 86 586 23 HOH HOH . G 5 HOH A 87 587 126 HOH HOH . G 5 HOH A 88 588 95 HOH HOH . G 5 HOH A 89 589 93 HOH HOH . G 5 HOH A 90 590 118 HOH HOH . G 5 HOH A 91 591 103 HOH HOH . G 5 HOH A 92 592 347 HOH HOH . G 5 HOH A 93 593 346 HOH HOH . G 5 HOH A 94 594 11 HOH HOH . G 5 HOH A 95 595 309 HOH HOH . G 5 HOH A 96 596 322 HOH HOH . G 5 HOH A 97 597 7 HOH HOH . G 5 HOH A 98 598 365 HOH HOH . G 5 HOH A 99 599 376 HOH HOH . G 5 HOH A 100 600 116 HOH HOH . G 5 HOH A 101 601 58 HOH HOH . G 5 HOH A 102 602 175 HOH HOH . G 5 HOH A 103 603 37 HOH HOH . G 5 HOH A 104 604 375 HOH HOH . G 5 HOH A 105 605 187 HOH HOH . G 5 HOH A 106 606 269 HOH HOH . G 5 HOH A 107 607 145 HOH HOH . G 5 HOH A 108 608 63 HOH HOH . G 5 HOH A 109 609 96 HOH HOH . G 5 HOH A 110 610 340 HOH HOH . G 5 HOH A 111 611 32 HOH HOH . G 5 HOH A 112 612 20 HOH HOH . G 5 HOH A 113 613 74 HOH HOH . G 5 HOH A 114 614 380 HOH HOH . G 5 HOH A 115 615 240 HOH HOH . G 5 HOH A 116 616 5 HOH HOH . G 5 HOH A 117 617 356 HOH HOH . G 5 HOH A 118 618 222 HOH HOH . G 5 HOH A 119 619 66 HOH HOH . G 5 HOH A 120 620 125 HOH HOH . G 5 HOH A 121 621 114 HOH HOH . G 5 HOH A 122 622 90 HOH HOH . G 5 HOH A 123 623 353 HOH HOH . G 5 HOH A 124 624 326 HOH HOH . G 5 HOH A 125 625 244 HOH HOH . G 5 HOH A 126 626 34 HOH HOH . G 5 HOH A 127 627 303 HOH HOH . G 5 HOH A 128 628 158 HOH HOH . G 5 HOH A 129 629 51 HOH HOH . G 5 HOH A 130 630 241 HOH HOH . G 5 HOH A 131 631 286 HOH HOH . G 5 HOH A 132 632 255 HOH HOH . G 5 HOH A 133 633 341 HOH HOH . G 5 HOH A 134 634 345 HOH HOH . G 5 HOH A 135 635 302 HOH HOH . G 5 HOH A 136 636 328 HOH HOH . G 5 HOH A 137 637 202 HOH HOH . G 5 HOH A 138 638 83 HOH HOH . G 5 HOH A 139 639 147 HOH HOH . G 5 HOH A 140 640 296 HOH HOH . G 5 HOH A 141 641 321 HOH HOH . G 5 HOH A 142 642 26 HOH HOH . G 5 HOH A 143 643 36 HOH HOH . G 5 HOH A 144 644 100 HOH HOH . G 5 HOH A 145 645 354 HOH HOH . G 5 HOH A 146 646 290 HOH HOH . G 5 HOH A 147 647 156 HOH HOH . G 5 HOH A 148 648 373 HOH HOH . G 5 HOH A 149 649 293 HOH HOH . G 5 HOH A 150 650 311 HOH HOH . G 5 HOH A 151 651 358 HOH HOH . G 5 HOH A 152 652 157 HOH HOH . G 5 HOH A 153 653 69 HOH HOH . G 5 HOH A 154 654 324 HOH HOH . G 5 HOH A 155 655 313 HOH HOH . G 5 HOH A 156 656 89 HOH HOH . G 5 HOH A 157 657 310 HOH HOH . G 5 HOH A 158 658 98 HOH HOH . G 5 HOH A 159 659 382 HOH HOH . G 5 HOH A 160 660 284 HOH HOH . G 5 HOH A 161 661 60 HOH HOH . G 5 HOH A 162 662 143 HOH HOH . G 5 HOH A 163 663 215 HOH HOH . G 5 HOH A 164 664 46 HOH HOH . G 5 HOH A 165 665 266 HOH HOH . G 5 HOH A 166 666 299 HOH HOH . G 5 HOH A 167 667 166 HOH HOH . G 5 HOH A 168 668 281 HOH HOH . G 5 HOH A 169 669 287 HOH HOH . G 5 HOH A 170 670 247 HOH HOH . G 5 HOH A 171 671 306 HOH HOH . G 5 HOH A 172 672 78 HOH HOH . G 5 HOH A 173 673 73 HOH HOH . G 5 HOH A 174 674 234 HOH HOH . G 5 HOH A 175 675 211 HOH HOH . G 5 HOH A 176 676 259 HOH HOH . G 5 HOH A 177 677 256 HOH HOH . G 5 HOH A 178 678 381 HOH HOH . G 5 HOH A 179 679 298 HOH HOH . G 5 HOH A 180 680 205 HOH HOH . G 5 HOH A 181 681 107 HOH HOH . G 5 HOH A 182 682 271 HOH HOH . G 5 HOH A 183 683 141 HOH HOH . G 5 HOH A 184 684 139 HOH HOH . G 5 HOH A 185 685 101 HOH HOH . G 5 HOH A 186 686 213 HOH HOH . G 5 HOH A 187 687 295 HOH HOH . G 5 HOH A 188 688 339 HOH HOH . G 5 HOH A 189 689 76 HOH HOH . G 5 HOH A 190 690 168 HOH HOH . G 5 HOH A 191 691 212 HOH HOH . G 5 HOH A 192 692 208 HOH HOH . G 5 HOH A 193 693 151 HOH HOH . G 5 HOH A 194 694 119 HOH HOH . G 5 HOH A 195 695 220 HOH HOH . G 5 HOH A 196 696 316 HOH HOH . G 5 HOH A 197 697 148 HOH HOH . G 5 HOH A 198 698 221 HOH HOH . G 5 HOH A 199 699 367 HOH HOH . G 5 HOH A 200 700 173 HOH HOH . G 5 HOH A 201 701 138 HOH HOH . G 5 HOH A 202 702 104 HOH HOH . G 5 HOH A 203 703 377 HOH HOH . G 5 HOH A 204 704 68 HOH HOH . G 5 HOH A 205 705 357 HOH HOH . G 5 HOH A 206 706 153 HOH HOH . G 5 HOH A 207 707 332 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 2.007 -1.063 10.794 1 34 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 0.726 -0.926 10.225 1 37.32 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 1.876 -1.985 11.991 1 29.59 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 1.064 -1.342 12.956 1 24.03 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 3.276 -2.269 12.538 1 37.12 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 3.361 -3.633 12.894 1 41.74 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #