data_5J9W # _model_server_result.job_id TaLkq32mj2oCvqYIQ6Pxnw _model_server_result.datetime_utc '2024-11-19 11:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":500}' # _entry.id 5J9W # _exptl.entry_id 5J9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.11 _cell.angle_gamma 90 _cell.entry_id 5J9W _cell.length_a 87.26 _cell.length_b 138.57 _cell.length_c 167.868 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M 1 1 E,F,G,H 2 1 I,J,K,L,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 121 E HIS 261 1_555 A N ALY 122 E ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C ALY 122 E ALY 262 1_555 A N THR 123 E THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 E C HIS 121 A HIS 261 1_555 E N ALY 122 A ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 E C ALY 122 A ALY 262 1_555 E N THR 123 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 I C HIS 121 I HIS 261 1_555 I N ALY 122 I ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 I C ALY 122 I ALY 262 1_555 I N THR 123 I THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 5J9W _atom_sites.fract_transf_matrix[1][1] 0.01146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 ACO E 1 500 500 ACO ACO . N 5 ACO I 1 500 500 ACO ACO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . M 5 20.818 -11.396 92.747 1 84.47 ? N1A ACO 500 E 1 HETATM 2 C C2A ACO . . . M 5 22.162 -11.331 92.722 1 78.3 ? C2A ACO 500 E 1 HETATM 3 N N3A ACO . . . M 5 22.781 -10.273 92.138 1 81.4 ? N3A ACO 500 E 1 HETATM 4 C C4A ACO . . . M 5 22.062 -9.278 91.577 1 87.34 ? C4A ACO 500 E 1 HETATM 5 C C5A ACO . . . M 5 20.647 -9.345 91.599 1 86.31 ? C5A ACO 500 E 1 HETATM 6 C C6A ACO . . . M 5 20.054 -10.427 92.199 1 82.28 ? C6A ACO 500 E 1 HETATM 7 N N6A ACO . . . M 5 18.619 -10.523 92.238 1 75.54 ? N6A ACO 500 E 1 HETATM 8 N N7A ACO . . . M 5 20.19 -8.251 90.986 1 89.97 ? N7A ACO 500 E 1 HETATM 9 C C8A ACO . . . M 5 21.211 -7.51 90.583 1 93.63 ? C8A ACO 500 E 1 HETATM 10 N N9A ACO . . . M 5 22.369 -8.112 90.929 1 91.09 ? N9A ACO 500 E 1 HETATM 11 C C1B ACO . . . M 5 23.666 -7.654 90.687 1 89.32 ? C1B ACO 500 E 1 HETATM 12 C C2B ACO . . . M 5 24.097 -8.016 89.348 1 92.35 ? C2B ACO 500 E 1 HETATM 13 O O2B ACO . . . M 5 24.695 -9.305 89.344 1 95.54 ? O2B ACO 500 E 1 HETATM 14 C C3B ACO . . . M 5 25.043 -7.009 88.972 1 91.15 ? C3B ACO 500 E 1 HETATM 15 O O3B ACO . . . M 5 26.358 -7.417 89.352 1 95.92 ? O3B ACO 500 E 1 HETATM 16 P P3B ACO . . . M 5 27.327 -8.042 88.308 1 95.65 ? P3B ACO 500 E 1 HETATM 17 O O7A ACO . . . M 5 26.563 -8.992 87.402 1 85.48 ? O7A ACO 500 E 1 HETATM 18 O O8A ACO . . . M 5 28.404 -8.798 89.04 1 97.36 ? O8A ACO 500 E 1 HETATM 19 O O9A ACO . . . M 5 27.948 -6.948 87.484 1 98.66 ? O9A ACO 500 E 1 HETATM 20 C C4B ACO . . . M 5 24.694 -5.808 89.726 1 81.76 ? C4B ACO 500 E 1 HETATM 21 O O4B ACO . . . M 5 23.721 -6.19 90.755 1 84.74 ? O4B ACO 500 E 1 HETATM 22 C C5B ACO . . . M 5 24.138 -4.784 88.864 1 71.44 ? C5B ACO 500 E 1 HETATM 23 O O5B ACO . . . M 5 23.237 -5.339 87.945 1 69.13 ? O5B ACO 500 E 1 HETATM 24 P P1A ACO . . . M 5 21.918 -4.534 87.541 1 62.71 ? P1A ACO 500 E 1 HETATM 25 O O1A ACO . . . M 5 21.055 -5.394 86.633 1 64.55 ? O1A ACO 500 E 1 HETATM 26 O O2A ACO . . . M 5 22.316 -3.271 86.808 1 64.38 ? O2A ACO 500 E 1 HETATM 27 O O3A ACO . . . M 5 21.101 -4.125 88.846 1 69 ? O3A ACO 500 E 1 HETATM 28 P P2A ACO . . . M 5 19.51 -3.864 88.771 1 51.82 ? P2A ACO 500 E 1 HETATM 29 O O4A ACO . . . M 5 18.775 -5.135 89.119 1 38.64 ? O4A ACO 500 E 1 HETATM 30 O O5A ACO . . . M 5 19.102 -3.424 87.385 1 39.91 ? O5A ACO 500 E 1 HETATM 31 O O6A ACO . . . M 5 19.142 -2.74 89.801 1 47.15 ? O6A ACO 500 E 1 HETATM 32 C CBP ACO . . . M 5 18.915 -2.236 92.121 1 52.52 ? CBP ACO 500 E 1 HETATM 33 C CCP ACO . . . M 5 19.884 -2.6 91.008 1 43.21 ? CCP ACO 500 E 1 HETATM 34 C CDP ACO . . . M 5 19.486 -2.642 93.445 1 41.21 ? CDP ACO 500 E 1 HETATM 35 C CEP ACO . . . M 5 18.676 -0.773 92.095 1 61.41 ? CEP ACO 500 E 1 HETATM 36 C CAP ACO . . . M 5 17.641 -3.016 91.858 1 61.43 ? CAP ACO 500 E 1 HETATM 37 O OAP ACO . . . M 5 17.92 -4.366 91.97 1 57.92 ? OAP ACO 500 E 1 HETATM 38 C C9P ACO . . . M 5 16.506 -2.682 92.778 1 60.94 ? C9P ACO 500 E 1 HETATM 39 O O9P ACO . . . M 5 15.738 -1.777 92.502 1 62.89 ? O9P ACO 500 E 1 HETATM 40 N N8P ACO . . . M 5 16.316 -3.459 93.966 1 53.09 ? N8P ACO 500 E 1 HETATM 41 C C7P ACO . . . M 5 15.211 -3.199 94.884 1 46.22 ? C7P ACO 500 E 1 HETATM 42 C C6P ACO . . . M 5 15.369 -1.86 95.606 1 46.05 ? C6P ACO 500 E 1 HETATM 43 C C5P ACO . . . M 5 16.792 -1.717 96.175 1 52.07 ? C5P ACO 500 E 1 HETATM 44 O O5P ACO . . . M 5 17.289 -2.623 96.85 1 51.19 ? O5P ACO 500 E 1 HETATM 45 N N4P ACO . . . M 5 17.56 -0.48 95.909 1 54.04 ? N4P ACO 500 E 1 HETATM 46 C C3P ACO . . . M 5 18.902 -0.335 96.44 1 55.02 ? C3P ACO 500 E 1 HETATM 47 C C2P ACO . . . M 5 18.85 0.229 97.832 1 60.85 ? C2P ACO 500 E 1 HETATM 48 S S1P ACO . . . M 5 20.503 0.675 98.365 1 63.68 ? S1P ACO 500 E 1 HETATM 49 C C ACO . . . M 5 20.383 1.975 99.582 1 74.88 ? C ACO 500 E 1 HETATM 50 O O ACO . . . M 5 19.515 1.858 100.452 1 76.44 ? O ACO 500 E 1 HETATM 51 C CH3 ACO . . . M 5 20.834 3.374 99.184 1 76.56 ? CH3 ACO 500 E 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #