data_5J9W # _model_server_result.job_id bZc4jga1cG_HM8zgqQ_e4g _model_server_result.datetime_utc '2024-11-19 11:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":500}' # _entry.id 5J9W # _exptl.entry_id 5J9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.11 _cell.angle_gamma 90 _cell.entry_id 5J9W _cell.length_a 87.26 _cell.length_b 138.57 _cell.length_c 167.868 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M 1 1 E,F,G,H 2 1 I,J,K,L,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 121 E HIS 261 1_555 A N ALY 122 E ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C ALY 122 E ALY 262 1_555 A N THR 123 E THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 E C HIS 121 A HIS 261 1_555 E N ALY 122 A ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 E C ALY 122 A ALY 262 1_555 E N THR 123 A THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 I C HIS 121 I HIS 261 1_555 I N ALY 122 I ALY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 I C ALY 122 I ALY 262 1_555 I N THR 123 I THR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 5J9W _atom_sites.fract_transf_matrix[1][1] 0.01146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 ACO E 1 500 500 ACO ACO . N 5 ACO I 1 500 500 ACO ACO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . N 5 49.51 66.762 98.212 1 88.82 ? N1A ACO 500 I 1 HETATM 2 C C2A ACO . . . N 5 50.819 66.538 98.423 1 89.06 ? C2A ACO 500 I 1 HETATM 3 N N3A ACO . . . N 5 51.362 66.778 99.643 1 90.14 ? N3A ACO 500 I 1 HETATM 4 C C4A ACO . . . N 5 50.599 67.24 100.655 1 90.28 ? C4A ACO 500 I 1 HETATM 5 C C5A ACO . . . N 5 49.221 67.481 100.441 1 87.32 ? C5A ACO 500 I 1 HETATM 6 C C6A ACO . . . N 5 48.706 67.225 99.193 1 85.63 ? C6A ACO 500 I 1 HETATM 7 N N6A ACO . . . N 5 47.31 67.452 98.929 1 80.32 ? N6A ACO 500 I 1 HETATM 8 N N7A ACO . . . N 5 48.714 67.927 101.594 1 81.43 ? N7A ACO 500 I 1 HETATM 9 C C8A ACO . . . N 5 49.673 67.986 102.506 1 82.33 ? C8A ACO 500 I 1 HETATM 10 N N9A ACO . . . N 5 50.837 67.57 101.96 1 89.5 ? N9A ACO 500 I 1 HETATM 11 C C1B ACO . . . N 5 52.089 67.478 102.569 1 96.88 ? C1B ACO 500 I 1 HETATM 12 C C2B ACO . . . N 5 52.686 68.793 102.708 1 93.81 ? C2B ACO 500 I 1 HETATM 13 O O2B ACO . . . N 5 53.379 69.135 101.517 1 85.28 ? O2B ACO 500 I 1 HETATM 14 C C3B ACO . . . N 5 53.597 68.679 103.806 1 104.06 ? C3B ACO 500 I 1 HETATM 15 O O3B ACO . . . N 5 54.906 68.408 103.306 1 112.33 ? O3B ACO 500 I 1 HETATM 16 P P3B ACO . . . N 5 55.982 69.53 103.255 1 108.74 ? P3B ACO 500 I 1 HETATM 17 O O7A ACO . . . N 5 55.299 70.879 103.105 1 107.63 ? O7A ACO 500 I 1 HETATM 18 O O8A ACO . . . N 5 56.886 69.282 102.076 1 102.38 ? O8A ACO 500 I 1 HETATM 19 O O9A ACO . . . N 5 56.792 69.519 104.522 1 103.15 ? O9A ACO 500 I 1 HETATM 20 C C4B ACO . . . N 5 53.145 67.547 104.611 1 101.92 ? C4B ACO 500 I 1 HETATM 21 O O4B ACO . . . N 5 51.999 66.938 103.928 1 105.31 ? O4B ACO 500 I 1 HETATM 22 C C5B ACO . . . N 5 52.774 67.983 105.94 1 92.68 ? C5B ACO 500 I 1 HETATM 23 O O5B ACO . . . N 5 51.805 68.992 105.873 1 83.36 ? O5B ACO 500 I 1 HETATM 24 P P1A ACO . . . N 5 50.458 68.821 106.715 1 65.51 ? P1A ACO 500 I 1 HETATM 25 O O1A ACO . . . N 5 49.491 69.952 106.399 1 42.67 ? O1A ACO 500 I 1 HETATM 26 O O2A ACO . . . N 5 50.809 68.831 108.186 1 58.84 ? O2A ACO 500 I 1 HETATM 27 O O3A ACO . . . N 5 49.774 67.429 106.357 1 77.2 ? O3A ACO 500 I 1 HETATM 28 P P2A ACO . . . N 5 48.181 67.24 106.521 1 61.19 ? P2A ACO 500 I 1 HETATM 29 O O4A ACO . . . N 5 47.478 67.653 105.251 1 55.47 ? O4A ACO 500 I 1 HETATM 30 O O5A ACO . . . N 5 47.674 68.067 107.676 1 59.13 ? O5A ACO 500 I 1 HETATM 31 O O6A ACO . . . N 5 47.894 65.728 106.805 1 50.52 ? O6A ACO 500 I 1 HETATM 32 C CBP ACO . . . N 5 47.923 63.447 106.165 1 56.7 ? CBP ACO 500 I 1 HETATM 33 C CCP ACO . . . N 5 48.721 64.734 106.215 1 50.39 ? CCP ACO 500 I 1 HETATM 34 C CDP ACO . . . N 5 48.469 62.547 105.101 1 58.59 ? CDP ACO 500 I 1 HETATM 35 C CEP ACO . . . N 5 48.024 62.805 107.498 1 46.6 ? CEP ACO 500 I 1 HETATM 36 C CAP ACO . . . N 5 46.509 63.853 105.795 1 74.08 ? CAP ACO 500 I 1 HETATM 37 O OAP ACO . . . N 5 46.575 64.569 104.612 1 77.1 ? OAP ACO 500 I 1 HETATM 38 C C9P ACO . . . N 5 45.542 62.72 105.613 1 77.31 ? C9P ACO 500 I 1 HETATM 39 O O9P ACO . . . N 5 45.339 61.899 106.488 1 84.85 ? O9P ACO 500 I 1 HETATM 40 N N8P ACO . . . N 5 44.805 62.612 104.392 1 68.36 ? N8P ACO 500 I 1 HETATM 41 C C7P ACO . . . N 5 43.853 61.517 104.239 1 69.74 ? C7P ACO 500 I 1 HETATM 42 C C6P ACO . . . N 5 44.39 60.444 103.289 1 71.45 ? C6P ACO 500 I 1 HETATM 43 C C5P ACO . . . N 5 45.748 59.923 103.792 1 61.17 ? C5P ACO 500 I 1 HETATM 44 O O5P ACO . . . N 5 46.672 59.742 102.995 1 64.4 ? O5P ACO 500 I 1 HETATM 45 N N4P ACO . . . N 5 45.954 59.64 105.228 1 52.86 ? N4P ACO 500 I 1 HETATM 46 C C3P ACO . . . N 5 47.246 59.146 105.669 1 56.81 ? C3P ACO 500 I 1 HETATM 47 C C2P ACO . . . N 5 47.272 57.654 105.491 1 68.3 ? C2P ACO 500 I 1 HETATM 48 S S1P ACO . . . N 5 48.946 57.044 105.665 1 74.78 ? S1P ACO 500 I 1 HETATM 49 C C ACO . . . N 5 48.894 55.343 106.207 1 79.76 ? C ACO 500 I 1 HETATM 50 O O ACO . . . N 5 47.808 54.765 106.308 1 82.69 ? O ACO 500 I 1 HETATM 51 C CH3 ACO . . . N 5 50.137 54.719 106.82 1 78.15 ? CH3 ACO 500 I 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 51 #