data_5J9X # _model_server_result.job_id JXzTv1DX8NOdEcPueg5dcw _model_server_result.datetime_utc '2024-12-21 18:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5J9X # _exptl.entry_id 5J9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J9X _cell.length_a 67.894 _cell.length_b 91.334 _cell.length_c 98.964 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 91.334 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 122 n n S C1 DMS sing 123 n n S C2 DMS sing 124 n n C1 H11 DMS sing 125 n n C1 H12 DMS sing 126 n n C1 H13 DMS sing 127 n n C2 H21 DMS sing 128 n n C2 H22 DMS sing 129 n n C2 H23 DMS sing 130 n n # _atom_sites.entry_id 5J9X _atom_sites.fract_transf_matrix[1][1] 0.014729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GC A 1 301 0 6GC INH . C 3 DMS A 1 302 1 DMS DMS . D 4 HOH A 1 401 161 HOH HOH . D 4 HOH A 2 402 35 HOH HOH . D 4 HOH A 3 403 138 HOH HOH . D 4 HOH A 4 404 158 HOH HOH . D 4 HOH A 5 405 88 HOH HOH . D 4 HOH A 6 406 98 HOH HOH . D 4 HOH A 7 407 167 HOH HOH . D 4 HOH A 8 408 30 HOH HOH . D 4 HOH A 9 409 74 HOH HOH . D 4 HOH A 10 410 181 HOH HOH . D 4 HOH A 11 411 105 HOH HOH . D 4 HOH A 12 412 76 HOH HOH . D 4 HOH A 13 413 116 HOH HOH . D 4 HOH A 14 414 160 HOH HOH . D 4 HOH A 15 415 19 HOH HOH . D 4 HOH A 16 416 5 HOH HOH . D 4 HOH A 17 417 94 HOH HOH . D 4 HOH A 18 418 69 HOH HOH . D 4 HOH A 19 419 70 HOH HOH . D 4 HOH A 20 420 182 HOH HOH . D 4 HOH A 21 421 13 HOH HOH . D 4 HOH A 22 422 169 HOH HOH . D 4 HOH A 23 423 7 HOH HOH . D 4 HOH A 24 424 41 HOH HOH . D 4 HOH A 25 425 79 HOH HOH . D 4 HOH A 26 426 122 HOH HOH . D 4 HOH A 27 427 39 HOH HOH . D 4 HOH A 28 428 25 HOH HOH . D 4 HOH A 29 429 16 HOH HOH . D 4 HOH A 30 430 48 HOH HOH . D 4 HOH A 31 431 144 HOH HOH . D 4 HOH A 32 432 101 HOH HOH . D 4 HOH A 33 433 6 HOH HOH . D 4 HOH A 34 434 100 HOH HOH . D 4 HOH A 35 435 14 HOH HOH . D 4 HOH A 36 436 1 HOH HOH . D 4 HOH A 37 437 75 HOH HOH . D 4 HOH A 38 438 21 HOH HOH . D 4 HOH A 39 439 17 HOH HOH . D 4 HOH A 40 440 97 HOH HOH . D 4 HOH A 41 441 11 HOH HOH . D 4 HOH A 42 442 123 HOH HOH . D 4 HOH A 43 443 42 HOH HOH . D 4 HOH A 44 444 72 HOH HOH . D 4 HOH A 45 445 33 HOH HOH . D 4 HOH A 46 446 60 HOH HOH . D 4 HOH A 47 447 59 HOH HOH . D 4 HOH A 48 448 73 HOH HOH . D 4 HOH A 49 449 18 HOH HOH . D 4 HOH A 50 450 80 HOH HOH . D 4 HOH A 51 451 99 HOH HOH . D 4 HOH A 52 452 107 HOH HOH . D 4 HOH A 53 453 54 HOH HOH . D 4 HOH A 54 454 24 HOH HOH . D 4 HOH A 55 455 124 HOH HOH . D 4 HOH A 56 456 108 HOH HOH . D 4 HOH A 57 457 20 HOH HOH . D 4 HOH A 58 458 155 HOH HOH . D 4 HOH A 59 459 177 HOH HOH . D 4 HOH A 60 460 2 HOH HOH . D 4 HOH A 61 461 114 HOH HOH . D 4 HOH A 62 462 28 HOH HOH . D 4 HOH A 63 463 125 HOH HOH . D 4 HOH A 64 464 40 HOH HOH . D 4 HOH A 65 465 12 HOH HOH . D 4 HOH A 66 466 106 HOH HOH . D 4 HOH A 67 467 46 HOH HOH . D 4 HOH A 68 468 96 HOH HOH . D 4 HOH A 69 469 22 HOH HOH . D 4 HOH A 70 470 23 HOH HOH . D 4 HOH A 71 471 135 HOH HOH . D 4 HOH A 72 472 10 HOH HOH . D 4 HOH A 73 473 9 HOH HOH . D 4 HOH A 74 474 43 HOH HOH . D 4 HOH A 75 475 38 HOH HOH . D 4 HOH A 76 476 3 HOH HOH . D 4 HOH A 77 477 27 HOH HOH . D 4 HOH A 78 478 168 HOH HOH . D 4 HOH A 79 479 150 HOH HOH . D 4 HOH A 80 480 53 HOH HOH . D 4 HOH A 81 481 127 HOH HOH . D 4 HOH A 82 482 68 HOH HOH . D 4 HOH A 83 483 90 HOH HOH . D 4 HOH A 84 484 111 HOH HOH . D 4 HOH A 85 485 139 HOH HOH . D 4 HOH A 86 486 58 HOH HOH . D 4 HOH A 87 487 36 HOH HOH . D 4 HOH A 88 488 82 HOH HOH . D 4 HOH A 89 489 120 HOH HOH . D 4 HOH A 90 490 104 HOH HOH . D 4 HOH A 91 491 109 HOH HOH . D 4 HOH A 92 492 140 HOH HOH . D 4 HOH A 93 493 180 HOH HOH . D 4 HOH A 94 494 102 HOH HOH . D 4 HOH A 95 495 166 HOH HOH . D 4 HOH A 96 496 8 HOH HOH . D 4 HOH A 97 497 64 HOH HOH . D 4 HOH A 98 498 44 HOH HOH . D 4 HOH A 99 499 165 HOH HOH . D 4 HOH A 100 500 45 HOH HOH . D 4 HOH A 101 501 37 HOH HOH . D 4 HOH A 102 502 26 HOH HOH . D 4 HOH A 103 503 112 HOH HOH . D 4 HOH A 104 504 83 HOH HOH . D 4 HOH A 105 505 51 HOH HOH . D 4 HOH A 106 506 95 HOH HOH . D 4 HOH A 107 507 29 HOH HOH . D 4 HOH A 108 508 115 HOH HOH . D 4 HOH A 109 509 156 HOH HOH . D 4 HOH A 110 510 128 HOH HOH . D 4 HOH A 111 511 65 HOH HOH . D 4 HOH A 112 512 49 HOH HOH . D 4 HOH A 113 513 47 HOH HOH . D 4 HOH A 114 514 164 HOH HOH . D 4 HOH A 115 515 34 HOH HOH . D 4 HOH A 116 516 131 HOH HOH . D 4 HOH A 117 517 154 HOH HOH . D 4 HOH A 118 518 141 HOH HOH . D 4 HOH A 119 519 175 HOH HOH . D 4 HOH A 120 520 86 HOH HOH . D 4 HOH A 121 521 78 HOH HOH . D 4 HOH A 122 522 89 HOH HOH . D 4 HOH A 123 523 146 HOH HOH . D 4 HOH A 124 524 62 HOH HOH . D 4 HOH A 125 525 93 HOH HOH . D 4 HOH A 126 526 133 HOH HOH . D 4 HOH A 127 527 32 HOH HOH . D 4 HOH A 128 528 56 HOH HOH . D 4 HOH A 129 529 4 HOH HOH . D 4 HOH A 130 530 136 HOH HOH . D 4 HOH A 131 531 61 HOH HOH . D 4 HOH A 132 532 130 HOH HOH . D 4 HOH A 133 533 63 HOH HOH . D 4 HOH A 134 534 179 HOH HOH . D 4 HOH A 135 535 162 HOH HOH . D 4 HOH A 136 536 77 HOH HOH . D 4 HOH A 137 537 178 HOH HOH . D 4 HOH A 138 538 85 HOH HOH . D 4 HOH A 139 539 55 HOH HOH . D 4 HOH A 140 540 176 HOH HOH . D 4 HOH A 141 541 143 HOH HOH . D 4 HOH A 142 542 117 HOH HOH . D 4 HOH A 143 543 92 HOH HOH . D 4 HOH A 144 544 172 HOH HOH . D 4 HOH A 145 545 119 HOH HOH . D 4 HOH A 146 546 81 HOH HOH . D 4 HOH A 147 547 121 HOH HOH . D 4 HOH A 148 548 71 HOH HOH . D 4 HOH A 149 549 171 HOH HOH . D 4 HOH A 150 550 31 HOH HOH . D 4 HOH A 151 551 173 HOH HOH . D 4 HOH A 152 552 147 HOH HOH . D 4 HOH A 153 553 163 HOH HOH . D 4 HOH A 154 554 137 HOH HOH . D 4 HOH A 155 555 134 HOH HOH . D 4 HOH A 156 556 142 HOH HOH . D 4 HOH A 157 557 110 HOH HOH . D 4 HOH A 158 558 52 HOH HOH . D 4 HOH A 159 559 152 HOH HOH . D 4 HOH A 160 560 151 HOH HOH . D 4 HOH A 161 561 66 HOH HOH . D 4 HOH A 162 562 57 HOH HOH . D 4 HOH A 163 563 113 HOH HOH . D 4 HOH A 164 564 118 HOH HOH . D 4 HOH A 165 565 50 HOH HOH . D 4 HOH A 166 566 148 HOH HOH . D 4 HOH A 167 567 103 HOH HOH . D 4 HOH A 168 568 91 HOH HOH . D 4 HOH A 169 569 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -17.744 29.106 -23.756 1 88.88 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 -17.742 28.072 -22.679 1 104.49 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 -17.492 30.746 -23.019 1 96.25 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 -16.371 28.84 -24.901 1 102.92 ? C2 DMS 302 A 1 HETATM 5 H H11 DMS . . . C 3 -18.317 30.986 -22.4 1 115.5 ? H11 DMS 302 A 1 HETATM 6 H H12 DMS . . . C 3 -17.406 31.469 -23.788 1 115.5 ? H12 DMS 302 A 1 HETATM 7 H H13 DMS . . . C 3 -16.606 30.741 -22.439 1 115.5 ? H13 DMS 302 A 1 HETATM 8 H H21 DMS . . . C 3 -16.508 27.922 -25.411 1 123.5 ? H21 DMS 302 A 1 HETATM 9 H H22 DMS . . . C 3 -15.461 28.811 -24.361 1 123.5 ? H22 DMS 302 A 1 HETATM 10 H H23 DMS . . . C 3 -16.339 29.632 -25.604 1 123.5 ? H23 DMS 302 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #