data_5J9Z # _model_server_result.job_id cNF1s2NkAlvaiK2SS6qq9w _model_server_result.datetime_utc '2025-02-18 16:48:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5J9Z # _exptl.entry_id 5J9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-1-(3-(4-amino-3-(1-methyl-1H-indol-3-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl)prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J9Z _cell.length_a 146.46 _cell.length_b 146.46 _cell.length_c 146.46 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 102 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBD _struct_conn.ptnr2_label_comp_id 6HJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6HJ _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.629 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H23 N7 O' _chem_comp.formula_weight 401.464 _chem_comp.id 6HJ _chem_comp.mon_nstd_flag . _chem_comp.name (R)-1-(3-(4-amino-3-(1-methyl-1H-indol-3-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl)prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAQ 6HJ doub 1 n y CAR CAL 6HJ sing 2 n y CAZ NAM 6HJ sing 3 n n CAQ CAP 6HJ sing 4 n y CAL NAM 6HJ sing 5 n y CAL CAK 6HJ doub 6 n y NAM CAN 6HJ sing 7 n y CAP CAO 6HJ doub 8 n y CAK CAO 6HJ sing 9 n y CAK CAJ 6HJ sing 10 n y CAN CAJ 6HJ doub 11 n y CAJ CAI 6HJ sing 12 n n CAI NAH 6HJ doub 13 n y CAI C5 6HJ sing 14 n y NAY C6 6HJ sing 15 n n NAH NAG 6HJ sing 16 n y C5 C6 6HJ doub 17 n y C5 C4 6HJ sing 18 n y C6 N1 6HJ sing 19 n y NAG C4 6HJ sing 20 n y NAG CAS 6HJ sing 21 n n CAX CAS 6HJ sing 22 n n CAX NAW 6HJ sing 23 n n C4 N3 6HJ doub 24 n y N1 C2 6HJ doub 25 n y CAS CAT 6HJ sing 26 n n NAW CAV 6HJ sing 27 n n NAW CBA 6HJ sing 28 n n CAT CAU 6HJ sing 29 n n CBB CBA 6HJ sing 30 n n CBB CBD 6HJ doub 31 n n N3 C2 6HJ sing 32 n y CAV CAU 6HJ sing 33 n n CBA OBC 6HJ doub 34 n n CBD H1 6HJ sing 35 n n CBD H2 6HJ sing 36 n n CBB H4 6HJ sing 37 n n CAX H6 6HJ sing 38 n n CAX H7 6HJ sing 39 n n CAV H8 6HJ sing 40 n n CAV H9 6HJ sing 41 n n CAU H10 6HJ sing 42 n n CAU H11 6HJ sing 43 n n CAT H12 6HJ sing 44 n n CAT H13 6HJ sing 45 n n CAS H14 6HJ sing 46 n n C2 H15 6HJ sing 47 n n NAY H16 6HJ sing 48 n n NAY H17 6HJ sing 49 n n CAO H18 6HJ sing 50 n n CAP H19 6HJ sing 51 n n CAQ H20 6HJ sing 52 n n CAR H21 6HJ sing 53 n n CAZ H22 6HJ sing 54 n n CAZ H23 6HJ sing 55 n n CAZ H24 6HJ sing 56 n n CAN H25 6HJ sing 57 n n # _atom_sites.entry_id 5J9Z _atom_sites.fract_transf_matrix[1][1] 0.006828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6HJ A 1 1101 1 6HJ DRG . C 3 HOH A 1 1201 2 HOH HOH . C 3 HOH A 2 1202 33 HOH HOH . C 3 HOH A 3 1203 8 HOH HOH . C 3 HOH A 4 1204 7 HOH HOH . C 3 HOH A 5 1205 3 HOH HOH . C 3 HOH A 6 1206 10 HOH HOH . C 3 HOH A 7 1207 25 HOH HOH . C 3 HOH A 8 1208 4 HOH HOH . C 3 HOH A 9 1209 20 HOH HOH . C 3 HOH A 10 1210 17 HOH HOH . C 3 HOH A 11 1211 21 HOH HOH . C 3 HOH A 12 1212 13 HOH HOH . C 3 HOH A 13 1213 29 HOH HOH . C 3 HOH A 14 1214 1 HOH HOH . C 3 HOH A 15 1215 19 HOH HOH . C 3 HOH A 16 1216 12 HOH HOH . C 3 HOH A 17 1217 6 HOH HOH . C 3 HOH A 18 1218 18 HOH HOH . C 3 HOH A 19 1219 35 HOH HOH . C 3 HOH A 20 1220 30 HOH HOH . C 3 HOH A 21 1221 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6HJ . . . B 2 0.361 52.406 -21.868 1 44.01 ? C4 6HJ 1101 A 1 HETATM 2 C C5 6HJ . . . B 2 0.813 53.052 -22.983 1 43.07 ? C5 6HJ 1101 A 1 HETATM 3 C C6 6HJ . . . B 2 1.789 53.995 -22.761 1 42.37 ? C6 6HJ 1101 A 1 HETATM 4 N N1 6HJ . . . B 2 2.275 54.268 -21.53 1 40.88 ? N1 6HJ 1101 A 1 HETATM 5 N N3 6HJ . . . B 2 0.813 52.628 -20.617 1 41.85 ? N3 6HJ 1101 A 1 HETATM 6 C CBD 6HJ . . . B 2 -6.373 51.334 -19.661 1 82.4 ? CBD 6HJ 1101 A 1 HETATM 7 C CBB 6HJ . . . B 2 -5.48 51 -20.848 1 82.06 ? CBB 6HJ 1101 A 1 HETATM 8 C CBA 6HJ . . . B 2 -4.636 49.799 -20.374 1 76.55 ? CBA 6HJ 1101 A 1 HETATM 9 O OBC 6HJ . . . B 2 -5.125 49.033 -19.547 1 75.49 ? OBC 6HJ 1101 A 1 HETATM 10 N NAW 6HJ . . . B 2 -3.422 49.556 -20.918 1 71.52 ? NAW 6HJ 1101 A 1 HETATM 11 C CAX 6HJ . . . B 2 -2.72 50.348 -21.934 1 54.99 ? CAX 6HJ 1101 A 1 HETATM 12 C CAV 6HJ . . . B 2 -2.733 48.353 -20.486 1 67.24 ? CAV 6HJ 1101 A 1 HETATM 13 C CAU 6HJ . . . B 2 -1.485 48.787 -19.819 1 75.45 ? CAU 6HJ 1101 A 1 HETATM 14 C CAT 6HJ . . . B 2 -0.596 49.432 -20.871 1 66.9 ? CAT 6HJ 1101 A 1 HETATM 15 C CAS 6HJ . . . B 2 -1.322 50.676 -21.327 1 54.09 ? CAS 6HJ 1101 A 1 HETATM 16 N NAG 6HJ . . . B 2 -0.55 51.528 -22.233 1 50.63 ? NAG 6HJ 1101 A 1 HETATM 17 N NAH 6HJ . . . B 2 -0.724 51.606 -23.595 1 52.27 ? NAH 6HJ 1101 A 1 HETATM 18 C C2 6HJ . . . B 2 1.779 53.566 -20.427 1 38.9 ? C2 6HJ 1101 A 1 HETATM 19 N NAY 6HJ . . . B 2 2.277 54.733 -23.76 1 39.62 ? NAY 6HJ 1101 A 1 HETATM 20 C CAI 6HJ . . . B 2 0.135 52.492 -24.061 1 45.52 ? CAI 6HJ 1101 A 1 HETATM 21 C CAJ 6HJ . . . B 2 0.149 52.7 -25.414 1 47.32 ? CAJ 6HJ 1101 A 1 HETATM 22 C CAK 6HJ . . . B 2 1.196 52.555 -26.255 1 42.71 ? CAK 6HJ 1101 A 1 HETATM 23 C CAO 6HJ . . . B 2 2.489 52.231 -26.057 1 42.96 ? CAO 6HJ 1101 A 1 HETATM 24 C CAP 6HJ . . . B 2 3.399 52.203 -27.159 1 47.06 ? CAP 6HJ 1101 A 1 HETATM 25 C CAQ 6HJ . . . B 2 2.925 52.512 -28.465 1 45.96 ? CAQ 6HJ 1101 A 1 HETATM 26 C CAR 6HJ . . . B 2 1.567 52.828 -28.607 1 45.5 ? CAR 6HJ 1101 A 1 HETATM 27 C CAL 6HJ . . . B 2 0.758 52.833 -27.502 1 45.08 ? CAL 6HJ 1101 A 1 HETATM 28 N NAM 6HJ . . . B 2 -0.555 53.078 -27.403 1 45.56 ? NAM 6HJ 1101 A 1 HETATM 29 C CAZ 6HJ . . . B 2 -1.423 53.441 -28.507 1 43.43 ? CAZ 6HJ 1101 A 1 HETATM 30 C CAN 6HJ . . . B 2 -0.936 52.977 -26.141 1 46.55 ? CAN 6HJ 1101 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #