data_5JA0 # _model_server_result.job_id RzTc4A-kjoJEE4EIPUioXQ _model_server_result.datetime_utc '2024-11-14 11:11:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ja0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5JA0 # _exptl.entry_id 5JA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.326 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FARNESYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JA0 _cell.length_a 110.89 _cell.length_b 110.89 _cell.length_c 77.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.89 110.89 38.74 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H28 O7 P2' _chem_comp.formula_weight 382.326 _chem_comp.id FPP _chem_comp.mon_nstd_flag . _chem_comp.name 'FARNESYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FPP sing 83 n n C1 C2 FPP sing 84 n n C1 H11 FPP sing 85 n n C1 H12A FPP sing 86 n n O1 PA FPP sing 87 n n C2 C3 FPP doub 88 e n C2 H2 FPP sing 89 n n C3 C4 FPP sing 90 n n C3 C5 FPP sing 91 n n C4 H41 FPP sing 92 n n C4 H42 FPP sing 93 n n C4 H43 FPP sing 94 n n C5 C6 FPP sing 95 n n C5 H51 FPP sing 96 n n C5 H52 FPP sing 97 n n C6 C7 FPP sing 98 n n C6 H61 FPP sing 99 n n C6 H62 FPP sing 100 n n C7 C8 FPP doub 101 e n C7 H7 FPP sing 102 n n C8 C10 FPP sing 103 n n C8 C9 FPP sing 104 n n C10 H101 FPP sing 105 n n C10 H102 FPP sing 106 n n C10 H103 FPP sing 107 n n C9 C11 FPP sing 108 n n C9 H91 FPP sing 109 n n C9 H92 FPP sing 110 n n C11 C12 FPP sing 111 n n C11 H111 FPP sing 112 n n C11 H112 FPP sing 113 n n C12 C13 FPP doub 114 n n C12 H12 FPP sing 115 n n C13 C14 FPP sing 116 n n C13 C15 FPP sing 117 n n C14 H141 FPP sing 118 n n C14 H142 FPP sing 119 n n C14 H143 FPP sing 120 n n C15 H151 FPP sing 121 n n C15 H152 FPP sing 122 n n C15 H153 FPP sing 123 n n PA O1A FPP doub 124 n n PA O2A FPP sing 125 n n PA O3A FPP sing 126 n n O2A HOA2 FPP sing 127 n n O3A PB FPP sing 128 n n PB O1B FPP doub 129 n n PB O2B FPP sing 130 n n PB O3B FPP sing 131 n n O2B HOB2 FPP sing 132 n n O3B HOB3 FPP sing 133 n n # _atom_sites.entry_id 5JA0 _atom_sites.fract_transf_matrix[1][1] 0.009018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 F 1 401 1 PO4 PO4 . C 3 FPP F 1 402 1 FPP FPP . D 4 HOH F 1 501 125 HOH HOH . D 4 HOH F 2 502 85 HOH HOH . D 4 HOH F 3 503 134 HOH HOH . D 4 HOH F 4 504 156 HOH HOH . D 4 HOH F 5 505 13 HOH HOH . D 4 HOH F 6 506 169 HOH HOH . D 4 HOH F 7 507 69 HOH HOH . D 4 HOH F 8 508 159 HOH HOH . D 4 HOH F 9 509 119 HOH HOH . D 4 HOH F 10 510 58 HOH HOH . D 4 HOH F 11 511 147 HOH HOH . D 4 HOH F 12 512 102 HOH HOH . D 4 HOH F 13 513 37 HOH HOH . D 4 HOH F 14 514 98 HOH HOH . D 4 HOH F 15 515 5 HOH HOH . D 4 HOH F 16 516 61 HOH HOH . D 4 HOH F 17 517 99 HOH HOH . D 4 HOH F 18 518 138 HOH HOH . D 4 HOH F 19 519 9 HOH HOH . D 4 HOH F 20 520 178 HOH HOH . D 4 HOH F 21 521 86 HOH HOH . D 4 HOH F 22 522 62 HOH HOH . D 4 HOH F 23 523 89 HOH HOH . D 4 HOH F 24 524 121 HOH HOH . D 4 HOH F 25 525 129 HOH HOH . D 4 HOH F 26 526 3 HOH HOH . D 4 HOH F 27 527 32 HOH HOH . D 4 HOH F 28 528 14 HOH HOH . D 4 HOH F 29 529 18 HOH HOH . D 4 HOH F 30 530 173 HOH HOH . D 4 HOH F 31 531 68 HOH HOH . D 4 HOH F 32 532 1 HOH HOH . D 4 HOH F 33 533 167 HOH HOH . D 4 HOH F 34 534 90 HOH HOH . D 4 HOH F 35 535 23 HOH HOH . D 4 HOH F 36 536 136 HOH HOH . D 4 HOH F 37 537 20 HOH HOH . D 4 HOH F 38 538 65 HOH HOH . D 4 HOH F 39 539 56 HOH HOH . D 4 HOH F 40 540 64 HOH HOH . D 4 HOH F 41 541 172 HOH HOH . D 4 HOH F 42 542 75 HOH HOH . D 4 HOH F 43 543 29 HOH HOH . D 4 HOH F 44 544 47 HOH HOH . D 4 HOH F 45 545 15 HOH HOH . D 4 HOH F 46 546 50 HOH HOH . D 4 HOH F 47 547 74 HOH HOH . D 4 HOH F 48 548 148 HOH HOH . D 4 HOH F 49 549 144 HOH HOH . D 4 HOH F 50 550 55 HOH HOH . D 4 HOH F 51 551 66 HOH HOH . D 4 HOH F 52 552 38 HOH HOH . D 4 HOH F 53 553 78 HOH HOH . D 4 HOH F 54 554 71 HOH HOH . D 4 HOH F 55 555 88 HOH HOH . D 4 HOH F 56 556 17 HOH HOH . D 4 HOH F 57 557 141 HOH HOH . D 4 HOH F 58 558 49 HOH HOH . D 4 HOH F 59 559 91 HOH HOH . D 4 HOH F 60 560 36 HOH HOH . D 4 HOH F 61 561 52 HOH HOH . D 4 HOH F 62 562 22 HOH HOH . D 4 HOH F 63 563 11 HOH HOH . D 4 HOH F 64 564 46 HOH HOH . D 4 HOH F 65 565 2 HOH HOH . D 4 HOH F 66 566 21 HOH HOH . D 4 HOH F 67 567 111 HOH HOH . D 4 HOH F 68 568 124 HOH HOH . D 4 HOH F 69 569 107 HOH HOH . D 4 HOH F 70 570 27 HOH HOH . D 4 HOH F 71 571 135 HOH HOH . D 4 HOH F 72 572 108 HOH HOH . D 4 HOH F 73 573 126 HOH HOH . D 4 HOH F 74 574 6 HOH HOH . D 4 HOH F 75 575 120 HOH HOH . D 4 HOH F 76 576 57 HOH HOH . D 4 HOH F 77 577 165 HOH HOH . D 4 HOH F 78 578 140 HOH HOH . D 4 HOH F 79 579 16 HOH HOH . D 4 HOH F 80 580 44 HOH HOH . D 4 HOH F 81 581 53 HOH HOH . D 4 HOH F 82 582 171 HOH HOH . D 4 HOH F 83 583 30 HOH HOH . D 4 HOH F 84 584 34 HOH HOH . D 4 HOH F 85 585 12 HOH HOH . D 4 HOH F 86 586 42 HOH HOH . D 4 HOH F 87 587 59 HOH HOH . D 4 HOH F 88 588 39 HOH HOH . D 4 HOH F 89 589 158 HOH HOH . D 4 HOH F 90 590 19 HOH HOH . D 4 HOH F 91 591 28 HOH HOH . D 4 HOH F 92 592 41 HOH HOH . D 4 HOH F 93 593 182 HOH HOH . D 4 HOH F 94 594 166 HOH HOH . D 4 HOH F 95 595 175 HOH HOH . D 4 HOH F 96 596 100 HOH HOH . D 4 HOH F 97 597 82 HOH HOH . D 4 HOH F 98 598 113 HOH HOH . D 4 HOH F 99 599 118 HOH HOH . D 4 HOH F 100 600 174 HOH HOH . D 4 HOH F 101 601 181 HOH HOH . D 4 HOH F 102 602 35 HOH HOH . D 4 HOH F 103 603 179 HOH HOH . D 4 HOH F 104 604 168 HOH HOH . D 4 HOH F 105 605 26 HOH HOH . D 4 HOH F 106 606 43 HOH HOH . D 4 HOH F 107 607 163 HOH HOH . D 4 HOH F 108 608 79 HOH HOH . D 4 HOH F 109 609 73 HOH HOH . D 4 HOH F 110 610 72 HOH HOH . D 4 HOH F 111 611 133 HOH HOH . D 4 HOH F 112 612 123 HOH HOH . D 4 HOH F 113 613 164 HOH HOH . D 4 HOH F 114 614 8 HOH HOH . D 4 HOH F 115 615 45 HOH HOH . D 4 HOH F 116 616 122 HOH HOH . D 4 HOH F 117 617 142 HOH HOH . D 4 HOH F 118 618 177 HOH HOH . D 4 HOH F 119 619 110 HOH HOH . D 4 HOH F 120 620 150 HOH HOH . D 4 HOH F 121 621 48 HOH HOH . D 4 HOH F 122 622 60 HOH HOH . D 4 HOH F 123 623 25 HOH HOH . D 4 HOH F 124 624 10 HOH HOH . D 4 HOH F 125 625 24 HOH HOH . D 4 HOH F 126 626 152 HOH HOH . D 4 HOH F 127 627 51 HOH HOH . D 4 HOH F 128 628 31 HOH HOH . D 4 HOH F 129 629 4 HOH HOH . D 4 HOH F 130 630 106 HOH HOH . D 4 HOH F 131 631 151 HOH HOH . D 4 HOH F 132 632 80 HOH HOH . D 4 HOH F 133 633 127 HOH HOH . D 4 HOH F 134 634 109 HOH HOH . D 4 HOH F 135 635 160 HOH HOH . D 4 HOH F 136 636 97 HOH HOH . D 4 HOH F 137 637 104 HOH HOH . D 4 HOH F 138 638 40 HOH HOH . D 4 HOH F 139 639 157 HOH HOH . D 4 HOH F 140 640 103 HOH HOH . D 4 HOH F 141 641 145 HOH HOH . D 4 HOH F 142 642 183 HOH HOH . D 4 HOH F 143 643 96 HOH HOH . D 4 HOH F 144 644 101 HOH HOH . D 4 HOH F 145 645 153 HOH HOH . D 4 HOH F 146 646 83 HOH HOH . D 4 HOH F 147 647 154 HOH HOH . D 4 HOH F 148 648 128 HOH HOH . D 4 HOH F 149 649 114 HOH HOH . D 4 HOH F 150 650 33 HOH HOH . D 4 HOH F 151 651 81 HOH HOH . D 4 HOH F 152 652 105 HOH HOH . D 4 HOH F 153 653 161 HOH HOH . D 4 HOH F 154 654 70 HOH HOH . D 4 HOH F 155 655 112 HOH HOH . D 4 HOH F 156 656 176 HOH HOH . D 4 HOH F 157 657 116 HOH HOH . D 4 HOH F 158 658 7 HOH HOH . D 4 HOH F 159 659 94 HOH HOH . D 4 HOH F 160 660 131 HOH HOH . D 4 HOH F 161 661 146 HOH HOH . D 4 HOH F 162 662 155 HOH HOH . D 4 HOH F 163 663 92 HOH HOH . D 4 HOH F 164 664 170 HOH HOH . D 4 HOH F 165 665 117 HOH HOH . D 4 HOH F 166 666 180 HOH HOH . D 4 HOH F 167 667 137 HOH HOH . D 4 HOH F 168 668 149 HOH HOH . D 4 HOH F 169 669 95 HOH HOH . D 4 HOH F 170 670 54 HOH HOH . D 4 HOH F 171 671 115 HOH HOH . D 4 HOH F 172 672 63 HOH HOH . D 4 HOH F 173 673 87 HOH HOH . D 4 HOH F 174 674 84 HOH HOH . D 4 HOH F 175 675 67 HOH HOH . D 4 HOH F 176 676 130 HOH HOH . D 4 HOH F 177 677 93 HOH HOH . D 4 HOH F 178 678 162 HOH HOH . D 4 HOH F 179 679 143 HOH HOH . D 4 HOH F 180 680 76 HOH HOH . D 4 HOH F 181 681 139 HOH HOH . D 4 HOH F 182 682 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPP . . . C 3 5.099 76.545 28.614 1 57.16 ? C1 FPP 402 F 1 HETATM 2 O O1 FPP . . . C 3 5.291 75.098 28.588 1 63.9 ? O1 FPP 402 F 1 HETATM 3 C C2 FPP . . . C 3 3.606 76.667 28.916 1 52.4 ? C2 FPP 402 F 1 HETATM 4 C C3 FPP . . . C 3 2.875 77.745 28.581 1 53.81 ? C3 FPP 402 F 1 HETATM 5 C C4 FPP . . . C 3 3.474 78.971 27.949 1 49.92 ? C4 FPP 402 F 1 HETATM 6 C C5 FPP . . . C 3 1.396 77.736 28.903 1 47.63 ? C5 FPP 402 F 1 HETATM 7 C C6 FPP . . . C 3 0.528 77.378 27.711 1 51.29 ? C6 FPP 402 F 1 HETATM 8 C C7 FPP . . . C 3 -0.972 77.41 28.065 1 44.9 ? C7 FPP 402 F 1 HETATM 9 C C8 FPP . . . C 3 -1.926 77.41 27.112 1 50.18 ? C8 FPP 402 F 1 HETATM 10 C C10 FPP . . . C 3 -1.632 77.342 25.627 1 47.26 ? C10 FPP 402 F 1 HETATM 11 C C9 FPP . . . C 3 -3.387 77.414 27.572 1 56.37 ? C9 FPP 402 F 1 HETATM 12 C C11 FPP . . . C 3 -4.284 78.35 26.765 1 53.41 ? C11 FPP 402 F 1 HETATM 13 C C12 FPP . . . C 3 -4.057 79.778 27.155 1 50.92 ? C12 FPP 402 F 1 HETATM 14 C C13 FPP . . . C 3 -4.869 80.61 27.859 1 49.64 ? C13 FPP 402 F 1 HETATM 15 C C14 FPP . . . C 3 -6.227 80.283 28.394 1 54.83 ? C14 FPP 402 F 1 HETATM 16 C C15 FPP . . . C 3 -4.385 81.995 28.125 1 47.25 ? C15 FPP 402 F 1 HETATM 17 P PA FPP . . . C 3 6.125 74.281 27.494 1 58.59 ? PA FPP 402 F 1 HETATM 18 O O1A FPP . . . C 3 6.067 72.881 28.03 1 73.41 ? O1A FPP 402 F 1 HETATM 19 O O2A FPP . . . C 3 5.647 74.534 26.07 1 50.39 ? O2A FPP 402 F 1 HETATM 20 O O3A FPP . . . C 3 7.581 74.821 27.957 1 57.05 ? O3A FPP 402 F 1 HETATM 21 P PB FPP . . . C 3 8.954 74.473 27.201 1 52.32 ? PB FPP 402 F 1 HETATM 22 O O1B FPP . . . C 3 8.847 75.225 25.87 1 58.71 ? O1B FPP 402 F 1 HETATM 23 O O2B FPP . . . C 3 8.938 72.993 27.073 1 50.73 ? O2B FPP 402 F 1 HETATM 24 O O3B FPP . . . C 3 9.952 75.2 27.991 1 49.99 ? O3B FPP 402 F 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #