data_5JA2 # _model_server_result.job_id lYHcpahjE4p8aa4OZsFrEw _model_server_result.datetime_utc '2024-11-04 23:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ja2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1303}' # _entry.id 5JA2 # _exptl.entry_id 5JA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Meso-2,3-Butanediol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.62 _cell.angle_gamma 90 _cell.entry_id 5JA2 _cell.length_a 159.27 _cell.length_b 57.69 _cell.length_c 182.424 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 1008 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 1006 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id P1 _struct_conn.ptnr2_label_comp_id 75C _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 75C _struct_conn.ptnr2_auth_seq_id 1301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.615 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU9 _chem_comp.mon_nstd_flag . _chem_comp.name Meso-2,3-Butanediol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C05 BU9 sing 166 n n C03 C04 BU9 sing 167 n n C04 C05 BU9 sing 168 n n C04 O06 BU9 sing 169 n n C05 O6 BU9 sing 170 n n C01 H011 BU9 sing 171 n n C01 H012 BU9 sing 172 n n C01 H013 BU9 sing 173 n n C05 H05 BU9 sing 174 n n C03 H031 BU9 sing 175 n n C03 H032 BU9 sing 176 n n C03 H033 BU9 sing 177 n n C04 H04 BU9 sing 178 n n O06 H06 BU9 sing 179 n n O6 H6 BU9 sing 180 n n # _atom_sites.entry_id 5JA2 _atom_sites.fract_transf_matrix[1][1] 0.006279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 75C A 1 1301 701 75C 4T8 . D 4 BU9 A 1 1302 1 BU9 BTD . E 4 BU9 A 1 1303 2 BU9 BTD . F 5 HOH A 1 1401 11 HOH HOH . F 5 HOH A 2 1402 15 HOH HOH . F 5 HOH A 3 1403 10 HOH HOH . F 5 HOH A 4 1404 4 HOH HOH . F 5 HOH A 5 1405 1 HOH HOH . F 5 HOH A 6 1406 3 HOH HOH . F 5 HOH A 7 1407 17 HOH HOH . F 5 HOH A 8 1408 18 HOH HOH . F 5 HOH A 9 1409 6 HOH HOH . F 5 HOH A 10 1410 7 HOH HOH . F 5 HOH A 11 1411 16 HOH HOH . F 5 HOH A 12 1412 9 HOH HOH . F 5 HOH A 13 1413 14 HOH HOH . F 5 HOH A 14 1414 13 HOH HOH . F 5 HOH A 15 1415 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 BU9 . . . E 4 -42.445 20.209 23.113 1 101.2 ? C03 BU9 1303 A 1 HETATM 2 C C04 BU9 . . . E 4 -43.431 19.066 23.201 1 103.19 ? C04 BU9 1303 A 1 HETATM 3 O O06 BU9 . . . E 4 -44.432 19.286 22.235 1 104.5 ? O06 BU9 1303 A 1 HETATM 4 C C05 BU9 . . . E 4 -44.096 18.977 24.557 1 103.62 ? C05 BU9 1303 A 1 HETATM 5 C C01 BU9 . . . E 4 -44.895 17.704 24.736 1 104.02 ? C01 BU9 1303 A 1 HETATM 6 O O6 BU9 . . . E 4 -43.087 19.001 25.54 1 102.89 ? O6 BU9 1303 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #