data_5JA3
#
_model_server_result.job_id            qLNixScH0ljAE2XL8TrecQ 
_model_server_result.datetime_utc      '2025-02-18 16:52:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ja3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5JA3 
#
_exptl.entry_id    5JA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          90.06 
_cell.angle_gamma         89.93 
_cell.entry_id            5JA3 
_cell.length_a            59.612 
_cell.length_b            60.444 
_cell.length_c            60.472 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     5JA3 
_atom_sites.fract_transf_matrix[1][1]    0.016775 
_atom_sites.fract_transf_matrix[1][2]    -0.000022 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016544 
_atom_sites.fract_transf_matrix[2][3]    0.00002 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 201 201 NDP NDP . 
F 3 U06 A 1 202 1 U06 DRG . 
G 2 NDP B 1 201 202 NDP NDP . 
H 3 U06 B 1 202 2 U06 DRG . 
I 2 NDP C 1 201 201 NDP NDP . 
J 3 U06 C 1 202 3 U06 DRG . 
K 2 NDP D 1 201 201 NDP NDP . 
L 3 U06 D 1 202 4 U06 DRG . 
M 4 HOH A 1 301 4 HOH HOH . 
M 4 HOH A 2 302 6 HOH HOH . 
M 4 HOH A 3 303 11 HOH HOH . 
M 4 HOH A 4 304 17 HOH HOH . 
M 4 HOH A 5 305 27 HOH HOH . 
M 4 HOH A 6 306 14 HOH HOH . 
M 4 HOH A 7 307 10 HOH HOH . 
M 4 HOH A 8 308 21 HOH HOH . 
M 4 HOH A 9 309 28 HOH HOH . 
M 4 HOH A 10 310 25 HOH HOH . 
N 4 HOH B 1 301 31 HOH HOH . 
N 4 HOH B 2 302 32 HOH HOH . 
N 4 HOH B 3 303 38 HOH HOH . 
N 4 HOH B 4 304 29 HOH HOH . 
N 4 HOH B 5 305 18 HOH HOH . 
N 4 HOH B 6 306 16 HOH HOH . 
N 4 HOH B 7 307 36 HOH HOH . 
N 4 HOH B 8 308 9 HOH HOH . 
N 4 HOH B 9 309 15 HOH HOH . 
N 4 HOH B 10 310 1 HOH HOH . 
N 4 HOH B 11 311 3 HOH HOH . 
O 4 HOH C 1 301 20 HOH HOH . 
O 4 HOH C 2 302 7 HOH HOH . 
O 4 HOH C 3 303 30 HOH HOH . 
O 4 HOH C 4 304 34 HOH HOH . 
O 4 HOH C 5 305 8 HOH HOH . 
O 4 HOH C 6 306 23 HOH HOH . 
O 4 HOH C 7 307 22 HOH HOH . 
O 4 HOH C 8 308 2 HOH HOH . 
O 4 HOH C 9 309 39 HOH HOH . 
P 4 HOH D 1 301 33 HOH HOH . 
P 4 HOH D 2 302 24 HOH HOH . 
P 4 HOH D 3 303 37 HOH HOH . 
P 4 HOH D 4 304 19 HOH HOH . 
P 4 HOH D 5 305 12 HOH HOH . 
P 4 HOH D 6 306 35 HOH HOH . 
P 4 HOH D 7 307 13 HOH HOH . 
P 4 HOH D 8 308 5 HOH HOH . 
P 4 HOH D 9 309 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . I 2 38.28 19.726 -23.489 1 28.16 ? PA NDP 201 C 1 
HETATM 2 O O1A NDP . . . I 2 37.098 20.213 -24.249 1 29.32 ? O1A NDP 201 C 1 
HETATM 3 O O2A NDP . . . I 2 38.158 18.775 -22.33 1 31.58 ? O2A NDP 201 C 1 
HETATM 4 O O5B NDP . . . I 2 39.338 19.123 -24.526 1 32.88 ? O5B NDP 201 C 1 
HETATM 5 C C5B NDP . . . I 2 39.763 20.194 -25.303 1 33.64 ? C5B NDP 201 C 1 
HETATM 6 C C4B NDP . . . I 2 40.785 19.624 -26.278 1 35.67 ? C4B NDP 201 C 1 
HETATM 7 O O4B NDP . . . I 2 40.151 18.667 -27.129 1 39.31 ? O4B NDP 201 C 1 
HETATM 8 C C3B NDP . . . I 2 41.375 20.784 -27.106 1 39.87 ? C3B NDP 201 C 1 
HETATM 9 O O3B NDP . . . I 2 42.701 21.036 -26.745 1 39.49 ? O3B NDP 201 C 1 
HETATM 10 C C2B NDP . . . I 2 41.383 20.269 -28.55 1 48.03 ? C2B NDP 201 C 1 
HETATM 11 O O2B NDP . . . I 2 42.595 20.155 -29.091 1 50.94 ? O2B NDP 201 C 1 
HETATM 12 C C1B NDP . . . I 2 40.654 18.86 -28.457 1 39.63 ? C1B NDP 201 C 1 
HETATM 13 N N9A NDP . . . I 2 39.517 18.991 -29.325 1 38.69 ? N9A NDP 201 C 1 
HETATM 14 C C8A NDP . . . I 2 38.309 19.661 -29.053 1 39.63 ? C8A NDP 201 C 1 
HETATM 15 N N7A NDP . . . I 2 37.453 19.649 -30.088 1 41.83 ? N7A NDP 201 C 1 
HETATM 16 C C5A NDP . . . I 2 38.15 18.943 -31.084 1 38.77 ? C5A NDP 201 C 1 
HETATM 17 C C6A NDP . . . I 2 37.794 18.587 -32.379 1 41.97 ? C6A NDP 201 C 1 
HETATM 18 N N6A NDP . . . I 2 36.55 18.962 -32.853 1 41.47 ? N6A NDP 201 C 1 
HETATM 19 N N1A NDP . . . I 2 38.657 17.882 -33.195 1 36.96 ? N1A NDP 201 C 1 
HETATM 20 C C2A NDP . . . I 2 39.869 17.558 -32.619 1 38.45 ? C2A NDP 201 C 1 
HETATM 21 N N3A NDP . . . I 2 40.359 17.822 -31.39 1 35.3 ? N3A NDP 201 C 1 
HETATM 22 C C4A NDP . . . I 2 39.447 18.537 -30.624 1 40.51 ? C4A NDP 201 C 1 
HETATM 23 O O3 NDP . . . I 2 39.075 21.099 -22.921 1 29.59 ? O3 NDP 201 C 1 
HETATM 24 P PN NDP . . . I 2 38.26 22.136 -22.003 1 32.6 ? PN NDP 201 C 1 
HETATM 25 O O1N NDP . . . I 2 39.327 22.823 -21.245 1 32.8 ? O1N NDP 201 C 1 
HETATM 26 O O2N NDP . . . I 2 37.218 22.962 -22.715 1 31.79 ? O2N NDP 201 C 1 
HETATM 27 O O5D NDP . . . I 2 37.344 21.408 -20.727 1 26.08 ? O5D NDP 201 C 1 
HETATM 28 C C5D NDP . . . I 2 38.201 20.851 -19.751 1 28.24 ? C5D NDP 201 C 1 
HETATM 29 C C4D NDP . . . I 2 37.646 21.249 -18.365 1 29.77 ? C4D NDP 201 C 1 
HETATM 30 O O4D NDP . . . I 2 36.28 20.76 -18.217 1 31.69 ? O4D NDP 201 C 1 
HETATM 31 C C3D NDP . . . I 2 38.472 20.608 -17.168 1 29.44 ? C3D NDP 201 C 1 
HETATM 32 O O3D NDP . . . I 2 38.561 21.534 -16.129 1 31.03 ? O3D NDP 201 C 1 
HETATM 33 C C2D NDP . . . I 2 37.58 19.484 -16.723 1 31.01 ? C2D NDP 201 C 1 
HETATM 34 O O2D NDP . . . I 2 37.745 19.154 -15.372 1 33.62 ? O2D NDP 201 C 1 
HETATM 35 C C1D NDP . . . I 2 36.184 20.145 -16.915 1 28.01 ? C1D NDP 201 C 1 
HETATM 36 N N1N NDP . . . I 2 35.141 19.109 -16.984 1 28.93 ? N1N NDP 201 C 1 
HETATM 37 C C2N NDP . . . I 2 33.958 19.226 -16.259 1 28.5 ? C2N NDP 201 C 1 
HETATM 38 C C3N NDP . . . I 2 32.926 18.357 -16.486 1 27.39 ? C3N NDP 201 C 1 
HETATM 39 C C7N NDP . . . I 2 31.718 18.506 -15.721 1 26.58 ? C7N NDP 201 C 1 
HETATM 40 O O7N NDP . . . I 2 30.667 17.893 -15.981 1 27.24 ? O7N NDP 201 C 1 
HETATM 41 N N7N NDP . . . I 2 31.744 19.366 -14.643 1 27.9 ? N7N NDP 201 C 1 
HETATM 42 C C4N NDP . . . I 2 33.009 17.244 -17.504 1 27.14 ? C4N NDP 201 C 1 
HETATM 43 C C5N NDP . . . I 2 34.373 17.103 -18.078 1 29.5 ? C5N NDP 201 C 1 
HETATM 44 C C6N NDP . . . I 2 35.348 17.99 -17.822 1 28.01 ? C6N NDP 201 C 1 
HETATM 45 P P2B NDP . . . I 2 43.232 21.763 -29.857 1 64.09 ? P2B NDP 201 C 1 
HETATM 46 O O1X NDP . . . I 2 43.476 22.498 -28.575 1 56.22 ? O1X NDP 201 C 1 
HETATM 47 O O2X NDP . . . I 2 44.449 21.204 -30.605 1 53.92 ? O2X NDP 201 C 1 
HETATM 48 O O3X NDP . . . I 2 42.049 22.195 -30.688 1 55.85 ? O3X NDP 201 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           622 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           48 
#