data_5JA3
#
_model_server_result.job_id            sL45jSinSXZ8M1GcBu1a-Q 
_model_server_result.datetime_utc      '2024-10-19 07:40:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ja3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    5JA3 
#
_exptl.entry_id    5JA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.446 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-4-methoxy-phenyl]benzoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          90.06 
_cell.angle_gamma         89.93 
_cell.entry_id            5JA3 
_cell.length_a            59.612 
_cell.length_b            60.444 
_cell.length_c            60.472 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C23 H22 N4 O3' 
_chem_comp.formula_weight    402.446 
_chem_comp.id                U06 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-4-methoxy-phenyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "3'-(3-(2,4-diamino-6-ethylpyrimidin-5-yl)prop-2-yn-1-yl)-4'-methoxy-[1,1'-biphenyl]-4-carboxylic acid;UCP1106" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OBD CBB U06 doub 440 n n 
NAI C4 U06 sing 441 n n 
N3 C4 U06 doub 442 n y 
N3 C2 U06 sing 443 n y 
CBB OBC U06 sing 444 n n 
CBB CAY U06 sing 445 n n 
NAF C2 U06 sing 446 n n 
C4 C5 U06 sing 447 n y 
CAZ CAY U06 doub 448 n y 
CAZ CBA U06 sing 449 n y 
C2 N1 U06 doub 450 n y 
CAY CAX U06 sing 451 n y 
CBA CAV U06 doub 452 n y 
C5 CAK U06 sing 453 n n 
C5 C6 U06 doub 454 n y 
N1 C6 U06 sing 455 n y 
CAK CAL U06 trip 456 n n 
C6 CAB U06 sing 457 n n 
CAX CAW U06 doub 458 n y 
CAA CAB U06 sing 459 n n 
CAV CAW U06 sing 460 n y 
CAV CAT U06 sing 461 n n 
CAL CAM U06 sing 462 n n 
CAU CAT U06 doub 463 n y 
CAU CAN U06 sing 464 n y 
CAM CAN U06 sing 465 n n 
CAT CAS U06 sing 466 n y 
CAN CAO U06 doub 467 n y 
CAS CAR U06 doub 468 n y 
CAO CAR U06 sing 469 n y 
CAO OAP U06 sing 470 n n 
OAP CAQ U06 sing 471 n n 
CAA H1 U06 sing 472 n n 
CAA H2 U06 sing 473 n n 
CAA H3 U06 sing 474 n n 
CAB H4 U06 sing 475 n n 
CAB H5 U06 sing 476 n n 
NAF H6 U06 sing 477 n n 
NAF H7 U06 sing 478 n n 
NAI H8 U06 sing 479 n n 
NAI H9 U06 sing 480 n n 
CAM H10 U06 sing 481 n n 
CAM H11 U06 sing 482 n n 
CAU H12 U06 sing 483 n n 
CAQ H13 U06 sing 484 n n 
CAQ H14 U06 sing 485 n n 
CAQ H15 U06 sing 486 n n 
CAR H16 U06 sing 487 n n 
CAS H17 U06 sing 488 n n 
CAW H18 U06 sing 489 n n 
CAX H19 U06 sing 490 n n 
OBC H20 U06 sing 491 n n 
CAZ H21 U06 sing 492 n n 
CBA H22 U06 sing 493 n n 
#
_atom_sites.entry_id                     5JA3 
_atom_sites.fract_transf_matrix[1][1]    0.016775 
_atom_sites.fract_transf_matrix[1][2]    -0.000022 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016544 
_atom_sites.fract_transf_matrix[2][3]    0.00002 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 201 201 NDP NDP . 
F 3 U06 A 1 202 1 U06 DRG . 
G 2 NDP B 1 201 202 NDP NDP . 
H 3 U06 B 1 202 2 U06 DRG . 
I 2 NDP C 1 201 201 NDP NDP . 
J 3 U06 C 1 202 3 U06 DRG . 
K 2 NDP D 1 201 201 NDP NDP . 
L 3 U06 D 1 202 4 U06 DRG . 
M 4 HOH A 1 301 4 HOH HOH . 
M 4 HOH A 2 302 6 HOH HOH . 
M 4 HOH A 3 303 11 HOH HOH . 
M 4 HOH A 4 304 17 HOH HOH . 
M 4 HOH A 5 305 27 HOH HOH . 
M 4 HOH A 6 306 14 HOH HOH . 
M 4 HOH A 7 307 10 HOH HOH . 
M 4 HOH A 8 308 21 HOH HOH . 
M 4 HOH A 9 309 28 HOH HOH . 
M 4 HOH A 10 310 25 HOH HOH . 
N 4 HOH B 1 301 31 HOH HOH . 
N 4 HOH B 2 302 32 HOH HOH . 
N 4 HOH B 3 303 38 HOH HOH . 
N 4 HOH B 4 304 29 HOH HOH . 
N 4 HOH B 5 305 18 HOH HOH . 
N 4 HOH B 6 306 16 HOH HOH . 
N 4 HOH B 7 307 36 HOH HOH . 
N 4 HOH B 8 308 9 HOH HOH . 
N 4 HOH B 9 309 15 HOH HOH . 
N 4 HOH B 10 310 1 HOH HOH . 
N 4 HOH B 11 311 3 HOH HOH . 
O 4 HOH C 1 301 20 HOH HOH . 
O 4 HOH C 2 302 7 HOH HOH . 
O 4 HOH C 3 303 30 HOH HOH . 
O 4 HOH C 4 304 34 HOH HOH . 
O 4 HOH C 5 305 8 HOH HOH . 
O 4 HOH C 6 306 23 HOH HOH . 
O 4 HOH C 7 307 22 HOH HOH . 
O 4 HOH C 8 308 2 HOH HOH . 
O 4 HOH C 9 309 39 HOH HOH . 
P 4 HOH D 1 301 33 HOH HOH . 
P 4 HOH D 2 302 24 HOH HOH . 
P 4 HOH D 3 303 37 HOH HOH . 
P 4 HOH D 4 304 19 HOH HOH . 
P 4 HOH D 5 305 12 HOH HOH . 
P 4 HOH D 6 306 35 HOH HOH . 
P 4 HOH D 7 307 13 HOH HOH . 
P 4 HOH D 8 308 5 HOH HOH . 
P 4 HOH D 9 309 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 U06 . . . J 3 30.117 14.663 -16.507 0.97 23.91 ? C4 U06 202 C 1 
HETATM 2 C C5 U06 . . . J 3 31.079 14.444 -15.518 0.97 27.29 ? C5 U06 202 C 1 
HETATM 3 C C6 U06 . . . J 3 30.674 14.388 -14.185 0.97 27.93 ? C6 U06 202 C 1 
HETATM 4 N N1 U06 . . . J 3 29.379 14.548 -13.9 0.97 25.79 ? N1 U06 202 C 1 
HETATM 5 N N3 U06 . . . J 3 28.831 14.806 -16.174 0.97 25.56 ? N3 U06 202 C 1 
HETATM 6 C CAA U06 . . . J 3 31.366 12.89 -12.387 0.97 30.16 ? CAA U06 202 C 1 
HETATM 7 C CAB U06 . . . J 3 31.623 14.189 -13.168 0.97 26.91 ? CAB U06 202 C 1 
HETATM 8 C C2 U06 . . . J 3 28.469 14.744 -14.875 0.97 27.19 ? C2 U06 202 C 1 
HETATM 9 N NAF U06 . . . J 3 27.192 14.887 -14.551 0.97 26.09 ? NAF U06 202 C 1 
HETATM 10 N NAI U06 . . . J 3 30.504 14.703 -17.792 0.97 23.56 ? NAI U06 202 C 1 
HETATM 11 C CAK U06 . . . J 3 32.499 14.265 -15.772 0.97 27.99 ? CAK U06 202 C 1 
HETATM 12 C CAL U06 . . . J 3 33.694 14.096 -15.837 0.97 27.79 ? CAL U06 202 C 1 
HETATM 13 C CAM U06 . . . J 3 35.144 13.88 -15.741 0.97 33.48 ? CAM U06 202 C 1 
HETATM 14 C CAN U06 . . . J 3 35.424 13.229 -14.516 0.97 32.6 ? CAN U06 202 C 1 
HETATM 15 C CAU U06 . . . J 3 34.929 11.961 -14.228 0.97 33.11 ? CAU U06 202 C 1 
HETATM 16 C CAO U06 . . . J 3 36.203 13.873 -13.561 0.97 36.92 ? CAO U06 202 C 1 
HETATM 17 O OAP U06 . . . J 3 36.642 15.108 -13.912 0.97 39.84 ? OAP U06 202 C 1 
HETATM 18 C CAQ U06 . . . J 3 37.661 15.613 -13.041 0.97 37.87 ? CAQ U06 202 C 1 
HETATM 19 C CAR U06 . . . J 3 36.498 13.27 -12.337 0.97 34.99 ? CAR U06 202 C 1 
HETATM 20 C CAS U06 . . . J 3 36.006 11.994 -12.058 0.97 35.65 ? CAS U06 202 C 1 
HETATM 21 C CAT U06 . . . J 3 35.203 11.344 -12.995 0.97 34.91 ? CAT U06 202 C 1 
HETATM 22 C CAV U06 . . . J 3 34.709 10.057 -12.766 0.97 38.64 ? CAV U06 202 C 1 
HETATM 23 C CAW U06 . . . J 3 35.309 9.181 -11.862 0.97 39.18 ? CAW U06 202 C 1 
HETATM 24 C CAX U06 . . . J 3 34.806 7.887 -11.696 0.97 37.92 ? CAX U06 202 C 1 
HETATM 25 C CAY U06 . . . J 3 33.7 7.46 -12.434 0.97 41.3 ? CAY U06 202 C 1 
HETATM 26 C CBB U06 . . . J 3 33.171 6.177 -12.311 0.97 38.98 ? CBB U06 202 C 1 
HETATM 27 O OBD U06 . . . J 3 32.257 5.808 -13.084 0.97 35.04 ? OBD U06 202 C 1 
HETATM 28 O OBC U06 . . . J 3 33.637 5.37 -11.476 0.97 44.46 ? OBC U06 202 C 1 
HETATM 29 C CAZ U06 . . . J 3 33.108 8.337 -13.34 0.97 38.22 ? CAZ U06 202 C 1 
HETATM 30 C CBA U06 . . . J 3 33.616 9.621 -13.505 0.97 39.33 ? CBA U06 202 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#