data_5JA3
#
_model_server_result.job_id            Ka6RGIpqX7AuwFOxG9XSjg 
_model_server_result.datetime_utc      '2024-10-19 07:38:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ja3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
#
_entry.id    5JA3 
#
_exptl.entry_id    5JA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.446 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-4-methoxy-phenyl]benzoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          90.06 
_cell.angle_gamma         89.93 
_cell.entry_id            5JA3 
_cell.length_a            59.612 
_cell.length_b            60.444 
_cell.length_c            60.472 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C23 H22 N4 O3' 
_chem_comp.formula_weight    402.446 
_chem_comp.id                U06 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-4-methoxy-phenyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "3'-(3-(2,4-diamino-6-ethylpyrimidin-5-yl)prop-2-yn-1-yl)-4'-methoxy-[1,1'-biphenyl]-4-carboxylic acid;UCP1106" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OBD CBB U06 doub 440 n n 
NAI C4 U06 sing 441 n n 
N3 C4 U06 doub 442 n y 
N3 C2 U06 sing 443 n y 
CBB OBC U06 sing 444 n n 
CBB CAY U06 sing 445 n n 
NAF C2 U06 sing 446 n n 
C4 C5 U06 sing 447 n y 
CAZ CAY U06 doub 448 n y 
CAZ CBA U06 sing 449 n y 
C2 N1 U06 doub 450 n y 
CAY CAX U06 sing 451 n y 
CBA CAV U06 doub 452 n y 
C5 CAK U06 sing 453 n n 
C5 C6 U06 doub 454 n y 
N1 C6 U06 sing 455 n y 
CAK CAL U06 trip 456 n n 
C6 CAB U06 sing 457 n n 
CAX CAW U06 doub 458 n y 
CAA CAB U06 sing 459 n n 
CAV CAW U06 sing 460 n y 
CAV CAT U06 sing 461 n n 
CAL CAM U06 sing 462 n n 
CAU CAT U06 doub 463 n y 
CAU CAN U06 sing 464 n y 
CAM CAN U06 sing 465 n n 
CAT CAS U06 sing 466 n y 
CAN CAO U06 doub 467 n y 
CAS CAR U06 doub 468 n y 
CAO CAR U06 sing 469 n y 
CAO OAP U06 sing 470 n n 
OAP CAQ U06 sing 471 n n 
CAA H1 U06 sing 472 n n 
CAA H2 U06 sing 473 n n 
CAA H3 U06 sing 474 n n 
CAB H4 U06 sing 475 n n 
CAB H5 U06 sing 476 n n 
NAF H6 U06 sing 477 n n 
NAF H7 U06 sing 478 n n 
NAI H8 U06 sing 479 n n 
NAI H9 U06 sing 480 n n 
CAM H10 U06 sing 481 n n 
CAM H11 U06 sing 482 n n 
CAU H12 U06 sing 483 n n 
CAQ H13 U06 sing 484 n n 
CAQ H14 U06 sing 485 n n 
CAQ H15 U06 sing 486 n n 
CAR H16 U06 sing 487 n n 
CAS H17 U06 sing 488 n n 
CAW H18 U06 sing 489 n n 
CAX H19 U06 sing 490 n n 
OBC H20 U06 sing 491 n n 
CAZ H21 U06 sing 492 n n 
CBA H22 U06 sing 493 n n 
#
_atom_sites.entry_id                     5JA3 
_atom_sites.fract_transf_matrix[1][1]    0.016775 
_atom_sites.fract_transf_matrix[1][2]    -0.000022 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016544 
_atom_sites.fract_transf_matrix[2][3]    0.00002 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 201 201 NDP NDP . 
F 3 U06 A 1 202 1 U06 DRG . 
G 2 NDP B 1 201 202 NDP NDP . 
H 3 U06 B 1 202 2 U06 DRG . 
I 2 NDP C 1 201 201 NDP NDP . 
J 3 U06 C 1 202 3 U06 DRG . 
K 2 NDP D 1 201 201 NDP NDP . 
L 3 U06 D 1 202 4 U06 DRG . 
M 4 HOH A 1 301 4 HOH HOH . 
M 4 HOH A 2 302 6 HOH HOH . 
M 4 HOH A 3 303 11 HOH HOH . 
M 4 HOH A 4 304 17 HOH HOH . 
M 4 HOH A 5 305 27 HOH HOH . 
M 4 HOH A 6 306 14 HOH HOH . 
M 4 HOH A 7 307 10 HOH HOH . 
M 4 HOH A 8 308 21 HOH HOH . 
M 4 HOH A 9 309 28 HOH HOH . 
M 4 HOH A 10 310 25 HOH HOH . 
N 4 HOH B 1 301 31 HOH HOH . 
N 4 HOH B 2 302 32 HOH HOH . 
N 4 HOH B 3 303 38 HOH HOH . 
N 4 HOH B 4 304 29 HOH HOH . 
N 4 HOH B 5 305 18 HOH HOH . 
N 4 HOH B 6 306 16 HOH HOH . 
N 4 HOH B 7 307 36 HOH HOH . 
N 4 HOH B 8 308 9 HOH HOH . 
N 4 HOH B 9 309 15 HOH HOH . 
N 4 HOH B 10 310 1 HOH HOH . 
N 4 HOH B 11 311 3 HOH HOH . 
O 4 HOH C 1 301 20 HOH HOH . 
O 4 HOH C 2 302 7 HOH HOH . 
O 4 HOH C 3 303 30 HOH HOH . 
O 4 HOH C 4 304 34 HOH HOH . 
O 4 HOH C 5 305 8 HOH HOH . 
O 4 HOH C 6 306 23 HOH HOH . 
O 4 HOH C 7 307 22 HOH HOH . 
O 4 HOH C 8 308 2 HOH HOH . 
O 4 HOH C 9 309 39 HOH HOH . 
P 4 HOH D 1 301 33 HOH HOH . 
P 4 HOH D 2 302 24 HOH HOH . 
P 4 HOH D 3 303 37 HOH HOH . 
P 4 HOH D 4 304 19 HOH HOH . 
P 4 HOH D 5 305 12 HOH HOH . 
P 4 HOH D 6 306 35 HOH HOH . 
P 4 HOH D 7 307 13 HOH HOH . 
P 4 HOH D 8 308 5 HOH HOH . 
P 4 HOH D 9 309 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 U06 . . . L 3 44.964 -15.717 -33.694 0.96 25.84 ? C4 U06 202 D 1 
HETATM 2 C C5 U06 . . . L 3 45.927 -16.702 -33.896 0.96 25.12 ? C5 U06 202 D 1 
HETATM 3 C C6 U06 . . . L 3 45.522 -18.03 -33.935 0.96 25.19 ? C6 U06 202 D 1 
HETATM 4 N N1 U06 . . . L 3 44.228 -18.315 -33.768 0.96 25.81 ? N1 U06 202 D 1 
HETATM 5 N N3 U06 . . . L 3 43.672 -16.061 -33.552 0.96 24.2 ? N3 U06 202 D 1 
HETATM 6 C CAA U06 . . . L 3 46.098 -19.92 -35.346 0.96 27.02 ? CAA U06 202 D 1 
HETATM 7 C CAB U06 . . . L 3 46.459 -19.049 -34.126 0.96 25.28 ? CAB U06 202 D 1 
HETATM 8 C C2 U06 . . . L 3 43.315 -17.356 -33.595 0.96 25.19 ? C2 U06 202 D 1 
HETATM 9 N NAF U06 . . . L 3 42.034 -17.692 -33.457 0.96 22.96 ? NAF U06 202 D 1 
HETATM 10 N NAI U06 . . . L 3 45.364 -14.433 -33.651 0.96 23.45 ? NAI U06 202 D 1 
HETATM 11 C CAK U06 . . . L 3 47.337 -16.441 -34.08 0.96 28.5 ? CAK U06 202 D 1 
HETATM 12 C CAL U06 . . . L 3 48.507 -16.354 -34.239 0.96 27.41 ? CAL U06 202 D 1 
HETATM 13 C CAM U06 . . . L 3 49.953 -16.384 -34.44 0.96 32.55 ? CAM U06 202 D 1 
HETATM 14 C CAN U06 . . . L 3 50.294 -17.571 -35.148 0.96 32.13 ? CAN U06 202 D 1 
HETATM 15 C CAU U06 . . . L 3 49.79 -17.836 -36.422 0.96 32.63 ? CAU U06 202 D 1 
HETATM 16 C CAO U06 . . . L 3 51.145 -18.504 -34.549 0.96 34.61 ? CAO U06 202 D 1 
HETATM 17 O OAP U06 . . . L 3 51.591 -18.186 -33.301 0.96 41.49 ? OAP U06 202 D 1 
HETATM 18 C CAQ U06 . . . L 3 52.766 -18.924 -32.938 0.96 36.47 ? CAQ U06 202 D 1 
HETATM 19 C CAR U06 . . . L 3 51.506 -19.677 -35.205 0.96 34.19 ? CAR U06 202 D 1 
HETATM 20 C CAS U06 . . . L 3 51.003 -19.926 -36.478 0.96 36.57 ? CAS U06 202 D 1 
HETATM 21 C CAT U06 . . . L 3 50.153 -19.012 -37.095 0.96 31.82 ? CAT U06 202 D 1 
HETATM 22 C CAV U06 . . . L 3 49.66 -19.282 -38.379 0.96 38.01 ? CAV U06 202 D 1 
HETATM 23 C CAW U06 . . . L 3 50.093 -20.388 -39.113 0.96 39.56 ? CAW U06 202 D 1 
HETATM 24 C CAX U06 . . . L 3 49.593 -20.636 -40.394 0.96 35.6 ? CAX U06 202 D 1 
HETATM 25 C CAY U06 . . . L 3 48.645 -19.775 -40.94 0.96 35.36 ? CAY U06 202 D 1 
HETATM 26 C CBB U06 . . . L 3 48.109 -19.952 -42.205 0.96 38.38 ? CBB U06 202 D 1 
HETATM 27 O OBD U06 . . . L 3 47.273 -19.125 -42.622 0.96 35.48 ? OBD U06 202 D 1 
HETATM 28 O OBC U06 . . . L 3 48.463 -20.907 -42.935 0.96 43.85 ? OBC U06 202 D 1 
HETATM 29 C CAZ U06 . . . L 3 48.212 -18.677 -40.207 0.96 41.28 ? CAZ U06 202 D 1 
HETATM 30 C CBA U06 . . . L 3 48.719 -18.428 -38.939 0.96 37.1 ? CBA U06 202 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#