data_5JA8
#
_model_server_result.job_id            rQ2XFPPIvVQB-vWVGQTmRw 
_model_server_result.datetime_utc      '2025-04-09 07:20:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ja8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":201}' 
#
_entry.id    5JA8 
#
_exptl.entry_id    5JA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JA8 
_cell.length_a            76 
_cell.length_b            109.28 
_cell.length_c            117.48 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,Y,Z 1 1 
C,D,N,O,P,Q,R,S,AA,BA 2 1 
E,F,T,U,V,CA,DA 3 1 
G,H,W,X,EA,FA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 P N N 
? 6 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 23 1_555 B SG CYS 96 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 50 B CYS 51 1_555 B SG CYS 102 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 D SG CYS 22 D CYS 23 1_555 D SG CYS 96 D CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 50 D CYS 51 1_555 D SG CYS 102 D CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 F SG CYS 22 F CYS 23 1_555 F SG CYS 96 F CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 F SG CYS 50 F CYS 51 1_555 F SG CYS 102 F CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 H SG CYS 22 H CYS 23 1_555 H SG CYS 96 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 H SG CYS 50 H CYS 51 1_555 H SG CYS 102 H CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 98 n n 
N1 C6 EPE sing 99 n n 
N1 C9 EPE sing 100 n n 
C2 C3 EPE sing 101 n n 
C2 H21 EPE sing 102 n n 
C2 H22 EPE sing 103 n n 
C3 N4 EPE sing 104 n n 
C3 H31 EPE sing 105 n n 
C3 H32 EPE sing 106 n n 
N4 C5 EPE sing 107 n n 
N4 C7 EPE sing 108 n n 
C5 C6 EPE sing 109 n n 
C5 H51 EPE sing 110 n n 
C5 H52 EPE sing 111 n n 
C6 H61 EPE sing 112 n n 
C6 H62 EPE sing 113 n n 
C7 C8 EPE sing 114 n n 
C7 H71 EPE sing 115 n n 
C7 H72 EPE sing 116 n n 
C8 O8 EPE sing 117 n n 
C8 H81 EPE sing 118 n n 
C8 H82 EPE sing 119 n n 
O8 HO8 EPE sing 120 n n 
C9 C10 EPE sing 121 n n 
C9 H91 EPE sing 122 n n 
C9 H92 EPE sing 123 n n 
C10 S EPE sing 124 n n 
C10 H101 EPE sing 125 n n 
C10 H102 EPE sing 126 n n 
S O1S EPE doub 127 n n 
S O2S EPE doub 128 n n 
S O3S EPE sing 129 n n 
O3S HOS3 EPE sing 130 n n 
#
_atom_sites.entry_id                     5JA8 
_atom_sites.fract_transf_matrix[1][1]    0.013158 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009151 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PO4 A 1 201 3 PO4 PO4 . 
J 3 PO4 A 1 202 6 PO4 PO4 . 
K 4 ACT A 1 203 1 ACT ACT . 
L 3 PO4 B 1 201 11 PO4 PO4 . 
M 5 EDO B 1 202 1 EDO EDO . 
N 3 PO4 C 1 201 1 PO4 PO4 . 
O 3 PO4 C 1 202 2 PO4 PO4 . 
P 6 EPE D 1 201 2 EPE EPE . 
Q 3 PO4 D 1 202 8 PO4 PO4 . 
R 3 PO4 D 1 203 10 PO4 PO4 . 
S 7 PDO D 1 204 1 PDO PDO . 
T 3 PO4 E 1 201 5 PO4 PO4 . 
U 3 PO4 E 1 202 7 PO4 PO4 . 
V 6 EPE F 1 201 1 EPE EPE . 
W 3 PO4 G 1 201 9 PO4 PO4 . 
X 7 PDO G 1 202 2 PDO PDO . 
Y 8 HOH A 1 301 86 HOH HOH . 
Y 8 HOH A 2 302 21 HOH HOH . 
Y 8 HOH A 3 303 96 HOH HOH . 
Y 8 HOH A 4 304 143 HOH HOH . 
Y 8 HOH A 5 305 145 HOH HOH . 
Y 8 HOH A 6 306 3 HOH HOH . 
Y 8 HOH A 7 307 81 HOH HOH . 
Y 8 HOH A 8 308 11 HOH HOH . 
Y 8 HOH A 9 309 154 HOH HOH . 
Y 8 HOH A 10 310 85 HOH HOH . 
Y 8 HOH A 11 311 54 HOH HOH . 
Y 8 HOH A 12 312 80 HOH HOH . 
Y 8 HOH A 13 313 79 HOH HOH . 
Y 8 HOH A 14 314 139 HOH HOH . 
Y 8 HOH A 15 315 12 HOH HOH . 
Y 8 HOH A 16 316 155 HOH HOH . 
Y 8 HOH A 17 317 151 HOH HOH . 
Z 8 HOH B 1 301 110 HOH HOH . 
Z 8 HOH B 2 302 56 HOH HOH . 
Z 8 HOH B 3 303 127 HOH HOH . 
Z 8 HOH B 4 304 66 HOH HOH . 
Z 8 HOH B 5 305 147 HOH HOH . 
Z 8 HOH B 6 306 63 HOH HOH . 
Z 8 HOH B 7 307 65 HOH HOH . 
Z 8 HOH B 8 308 131 HOH HOH . 
Z 8 HOH B 9 309 129 HOH HOH . 
Z 8 HOH B 10 310 132 HOH HOH . 
Z 8 HOH B 11 311 32 HOH HOH . 
Z 8 HOH B 12 312 62 HOH HOH . 
Z 8 HOH B 13 313 5 HOH HOH . 
Z 8 HOH B 14 314 116 HOH HOH . 
Z 8 HOH B 15 315 133 HOH HOH . 
Z 8 HOH B 16 316 160 HOH HOH . 
Z 8 HOH B 17 317 55 HOH HOH . 
Z 8 HOH B 18 318 72 HOH HOH . 
Z 8 HOH B 19 319 128 HOH HOH . 
Z 8 HOH B 20 320 37 HOH HOH . 
Z 8 HOH B 21 321 130 HOH HOH . 
Z 8 HOH B 22 322 146 HOH HOH . 
Z 8 HOH B 23 323 57 HOH HOH . 
AA 8 HOH C 1 301 97 HOH HOH . 
AA 8 HOH C 2 302 112 HOH HOH . 
AA 8 HOH C 3 303 84 HOH HOH . 
AA 8 HOH C 4 304 158 HOH HOH . 
AA 8 HOH C 5 305 159 HOH HOH . 
AA 8 HOH C 6 306 31 HOH HOH . 
AA 8 HOH C 7 307 30 HOH HOH . 
AA 8 HOH C 8 308 114 HOH HOH . 
AA 8 HOH C 9 309 6 HOH HOH . 
AA 8 HOH C 10 310 109 HOH HOH . 
AA 8 HOH C 11 311 144 HOH HOH . 
AA 8 HOH C 12 312 113 HOH HOH . 
AA 8 HOH C 13 313 91 HOH HOH . 
AA 8 HOH C 14 314 111 HOH HOH . 
AA 8 HOH C 15 315 92 HOH HOH . 
AA 8 HOH C 16 316 153 HOH HOH . 
BA 8 HOH D 1 301 19 HOH HOH . 
BA 8 HOH D 2 302 83 HOH HOH . 
BA 8 HOH D 3 303 28 HOH HOH . 
BA 8 HOH D 4 304 122 HOH HOH . 
BA 8 HOH D 5 305 136 HOH HOH . 
BA 8 HOH D 6 306 50 HOH HOH . 
BA 8 HOH D 7 307 2 HOH HOH . 
BA 8 HOH D 8 308 135 HOH HOH . 
BA 8 HOH D 9 309 107 HOH HOH . 
BA 8 HOH D 10 310 73 HOH HOH . 
BA 8 HOH D 11 311 115 HOH HOH . 
BA 8 HOH D 12 312 8 HOH HOH . 
BA 8 HOH D 13 313 108 HOH HOH . 
BA 8 HOH D 14 314 27 HOH HOH . 
CA 8 HOH E 1 301 43 HOH HOH . 
CA 8 HOH E 2 302 138 HOH HOH . 
CA 8 HOH E 3 303 40 HOH HOH . 
CA 8 HOH E 4 304 61 HOH HOH . 
CA 8 HOH E 5 305 90 HOH HOH . 
CA 8 HOH E 6 306 104 HOH HOH . 
CA 8 HOH E 7 307 140 HOH HOH . 
CA 8 HOH E 8 308 59 HOH HOH . 
CA 8 HOH E 9 309 67 HOH HOH . 
CA 8 HOH E 10 310 117 HOH HOH . 
CA 8 HOH E 11 311 71 HOH HOH . 
CA 8 HOH E 12 312 60 HOH HOH . 
CA 8 HOH E 13 313 157 HOH HOH . 
CA 8 HOH E 14 314 42 HOH HOH . 
CA 8 HOH E 15 315 82 HOH HOH . 
DA 8 HOH F 1 301 75 HOH HOH . 
DA 8 HOH F 2 302 106 HOH HOH . 
DA 8 HOH F 3 303 20 HOH HOH . 
DA 8 HOH F 4 304 23 HOH HOH . 
DA 8 HOH F 5 305 46 HOH HOH . 
DA 8 HOH F 6 306 102 HOH HOH . 
DA 8 HOH F 7 307 87 HOH HOH . 
DA 8 HOH F 8 308 39 HOH HOH . 
DA 8 HOH F 9 309 126 HOH HOH . 
DA 8 HOH F 10 310 101 HOH HOH . 
DA 8 HOH F 11 311 121 HOH HOH . 
DA 8 HOH F 12 312 100 HOH HOH . 
DA 8 HOH F 13 313 53 HOH HOH . 
DA 8 HOH F 14 314 124 HOH HOH . 
DA 8 HOH F 15 315 156 HOH HOH . 
DA 8 HOH F 16 316 125 HOH HOH . 
DA 8 HOH F 17 317 123 HOH HOH . 
DA 8 HOH F 18 318 105 HOH HOH . 
DA 8 HOH F 19 319 88 HOH HOH . 
DA 8 HOH F 20 320 99 HOH HOH . 
EA 8 HOH G 1 301 9 HOH HOH . 
EA 8 HOH G 2 302 150 HOH HOH . 
EA 8 HOH G 3 303 69 HOH HOH . 
EA 8 HOH G 4 304 119 HOH HOH . 
EA 8 HOH G 5 305 98 HOH HOH . 
EA 8 HOH G 6 306 148 HOH HOH . 
EA 8 HOH G 7 307 94 HOH HOH . 
EA 8 HOH G 8 308 120 HOH HOH . 
EA 8 HOH G 9 309 118 HOH HOH . 
EA 8 HOH G 10 310 152 HOH HOH . 
FA 8 HOH H 1 201 26 HOH HOH . 
FA 8 HOH H 2 202 25 HOH HOH . 
FA 8 HOH H 3 203 24 HOH HOH . 
FA 8 HOH H 4 204 89 HOH HOH . 
FA 8 HOH H 5 205 10 HOH HOH . 
FA 8 HOH H 6 206 74 HOH HOH . 
FA 8 HOH H 7 207 70 HOH HOH . 
FA 8 HOH H 8 208 14 HOH HOH . 
FA 8 HOH H 9 209 17 HOH HOH . 
FA 8 HOH H 10 210 68 HOH HOH . 
FA 8 HOH H 11 211 18 HOH HOH . 
FA 8 HOH H 12 212 51 HOH HOH . 
FA 8 HOH H 13 213 142 HOH HOH . 
FA 8 HOH H 14 214 16 HOH HOH . 
FA 8 HOH H 15 215 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . V 6 107.392 -51.677 78.661 1 77.7 ? N1 EPE 201 F 1 
HETATM 2 C C2 EPE . . . V 6 106.943 -50.378 78.113 1 77.93 ? C2 EPE 201 F 1 
HETATM 3 C C3 EPE . . . V 6 107.893 -49.229 78.306 1 77.88 ? C3 EPE 201 F 1 
HETATM 4 N N4 EPE . . . V 6 109.216 -49.653 77.861 1 77.71 ? N4 EPE 201 F 1 
HETATM 5 C C5 EPE . . . V 6 109.726 -50.9 78.466 1 76.29 ? C5 EPE 201 F 1 
HETATM 6 C C6 EPE . . . V 6 108.737 -51.761 79.245 1 76.76 ? C6 EPE 201 F 1 
HETATM 7 C C7 EPE . . . V 6 109.2 -49.717 76.41 1 79.4 ? C7 EPE 201 F 1 
HETATM 8 C C8 EPE . . . V 6 110.611 -49.546 75.926 1 82.44 ? C8 EPE 201 F 1 
HETATM 9 O O8 EPE . . . V 6 110.596 -49.66 74.519 1 84.85 ? O8 EPE 201 F 1 
HETATM 10 C C9 EPE . . . V 6 106.433 -52.208 79.622 1 77.97 ? C9 EPE 201 F 1 
HETATM 11 C C10 EPE . . . V 6 105.107 -52.409 78.908 1 78.55 ? C10 EPE 201 F 1 
HETATM 12 S S EPE . . . V 6 104.005 -53.244 79.779 1 83.18 ? S EPE 201 F 1 
HETATM 13 O O1S EPE . . . V 6 104.476 -54.575 80.068 1 80.67 ? O1S EPE 201 F 1 
HETATM 14 O O2S EPE . . . V 6 102.804 -53.285 78.987 1 84.31 ? O2S EPE 201 F 1 
HETATM 15 O O3S EPE . . . V 6 103.661 -52.501 80.967 1 82.69 ? O3S EPE 201 F 1 
HETATM 16 H H21 EPE . . . V 6 105.974 -50.088 78.523 1 93.52 ? H21 EPE 201 F 1 
HETATM 17 H H22 EPE . . . V 6 106.795 -50.503 77.042 1 93.52 ? H22 EPE 201 F 1 
HETATM 18 H H31 EPE . . . V 6 107.93 -48.954 79.36 1 93.46 ? H31 EPE 201 F 1 
HETATM 19 H H32 EPE . . . V 6 107.553 -48.372 77.725 1 93.46 ? H32 EPE 201 F 1 
HETATM 20 H H51 EPE . . . V 6 110.528 -50.624 79.15 1 91.55 ? H51 EPE 201 F 1 
HETATM 21 H H52 EPE . . . V 6 110.173 -51.534 77.7 1 91.55 ? H52 EPE 201 F 1 
HETATM 22 H H61 EPE . . . V 6 108.699 -51.427 80.282 1 92.11 ? H61 EPE 201 F 1 
HETATM 23 H H62 EPE . . . V 6 109.071 -52.797 79.222 1 92.11 ? H62 EPE 201 F 1 
HETATM 24 H H71 EPE . . . V 6 108.812 -50.682 76.087 1 95.28 ? H71 EPE 201 F 1 
HETATM 25 H H72 EPE . . . V 6 108.577 -48.931 75.989 1 95.28 ? H72 EPE 201 F 1 
HETATM 26 H H81 EPE . . . V 6 111.25 -50.312 76.364 1 98.92 ? H81 EPE 201 F 1 
HETATM 27 H H82 EPE . . . V 6 110.99 -48.571 76.218 1 98.92 ? H82 EPE 201 F 1 
HETATM 28 H HO8 EPE . . . V 6 111.5 -49.66 74.181 1 101.82 ? HO8 EPE 201 F 1 
HETATM 29 H H91 EPE . . . V 6 106.312 -51.498 80.438 1 93.57 ? H91 EPE 201 F 1 
HETATM 30 H H92 EPE . . . V 6 106.793 -53.149 80.029 1 93.57 ? H92 EPE 201 F 1 
HETATM 31 H H101 EPE . . . V 6 104.691 -51.434 78.658 1 94.26 ? H101 EPE 201 F 1 
HETATM 32 H H102 EPE . . . V 6 105.289 -52.94 77.976 1 94.26 ? H102 EPE 201 F 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#