data_5JAE # _model_server_result.job_id H6Hr_hiis3LBknq-7uPiZg _model_server_result.datetime_utc '2024-11-04 22:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5JAE # _exptl.entry_id 5JAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.18 _cell.angle_gamma 90 _cell.entry_id 5JAE _cell.length_a 81.57 _cell.length_b 92.08 _cell.length_c 92.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 30 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id O4 _struct_conn.ptnr2_label_comp_id BOG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id BOG _struct_conn.ptnr2_auth_seq_id 604 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5JAE _atom_sites.fract_transf_matrix[1][1] 0.012259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 601 1 BOG BOG . D 2 BOG A 1 602 3 BOG BOG . E 2 BOG A 1 603 11 BOG BOG . F 2 BOG A 1 604 13 BOG BOG . G 2 BOG B 1 601 2 BOG BOG . H 2 BOG B 1 602 4 BOG BOG . I 2 BOG B 1 603 5 BOG BOG . J 2 BOG B 1 604 9 BOG BOG . K 2 BOG B 1 605 10 BOG BOG . L 2 BOG B 1 606 12 BOG BOG . M 2 BOG B 1 607 14 BOG BOG . N 3 HOH A 1 701 96 HOH HOH . N 3 HOH A 2 702 3 HOH HOH . N 3 HOH A 3 703 32 HOH HOH . N 3 HOH A 4 704 9 HOH HOH . N 3 HOH A 5 705 60 HOH HOH . N 3 HOH A 6 706 22 HOH HOH . N 3 HOH A 7 707 42 HOH HOH . N 3 HOH A 8 708 1 HOH HOH . N 3 HOH A 9 709 43 HOH HOH . N 3 HOH A 10 710 11 HOH HOH . N 3 HOH A 11 711 71 HOH HOH . N 3 HOH A 12 712 5 HOH HOH . N 3 HOH A 13 713 87 HOH HOH . N 3 HOH A 14 714 49 HOH HOH . N 3 HOH A 15 715 63 HOH HOH . N 3 HOH A 16 716 50 HOH HOH . N 3 HOH A 17 717 59 HOH HOH . N 3 HOH A 18 718 46 HOH HOH . N 3 HOH A 19 719 52 HOH HOH . N 3 HOH A 20 720 57 HOH HOH . N 3 HOH A 21 721 48 HOH HOH . N 3 HOH A 22 722 47 HOH HOH . N 3 HOH A 23 723 88 HOH HOH . O 3 HOH B 1 701 68 HOH HOH . O 3 HOH B 2 702 24 HOH HOH . O 3 HOH B 3 703 39 HOH HOH . O 3 HOH B 4 704 2 HOH HOH . O 3 HOH B 5 705 38 HOH HOH . O 3 HOH B 6 706 45 HOH HOH . O 3 HOH B 7 707 4 HOH HOH . O 3 HOH B 8 708 8 HOH HOH . O 3 HOH B 9 709 6 HOH HOH . O 3 HOH B 10 710 69 HOH HOH . O 3 HOH B 11 711 34 HOH HOH . O 3 HOH B 12 712 80 HOH HOH . O 3 HOH B 13 713 81 HOH HOH . O 3 HOH B 14 714 85 HOH HOH . O 3 HOH B 15 715 12 HOH HOH . O 3 HOH B 16 716 89 HOH HOH . O 3 HOH B 17 717 79 HOH HOH . O 3 HOH B 18 718 78 HOH HOH . O 3 HOH B 19 719 44 HOH HOH . O 3 HOH B 20 720 73 HOH HOH . O 3 HOH B 21 721 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 2 45.16 26.223 12.042 1 115.83 ? C1 BOG 602 A 1 HETATM 2 O O1 BOG . . . D 2 46.117 25.452 12.631 1 110.85 ? O1 BOG 602 A 1 HETATM 3 C C2 BOG . . . D 2 45.814 27.411 11.339 1 119.74 ? C2 BOG 602 A 1 HETATM 4 O O2 BOG . . . D 2 46.373 28.346 12.289 1 121.46 ? O2 BOG 602 A 1 HETATM 5 C C3 BOG . . . D 2 44.843 28.146 10.49 1 121.24 ? C3 BOG 602 A 1 HETATM 6 O O3 BOG . . . D 2 45.585 29.131 9.728 1 122.14 ? O3 BOG 602 A 1 HETATM 7 C C4 BOG . . . D 2 44.093 27.252 9.544 1 122.27 ? C4 BOG 602 A 1 HETATM 8 O O4 BOG . . . D 2 43.077 28.026 8.903 1 125.07 ? O4 BOG 602 A 1 HETATM 9 C C5 BOG . . . D 2 43.44 26.064 10.259 1 120.43 ? C5 BOG 602 A 1 HETATM 10 O O5 BOG . . . D 2 44.413 25.33 11.088 1 117.6 ? O5 BOG 602 A 1 HETATM 11 C C6 BOG . . . D 2 42.836 25.127 9.249 1 121.23 ? C6 BOG 602 A 1 HETATM 12 O O6 BOG . . . D 2 41.662 25.686 8.727 1 121.07 ? O6 BOG 602 A 1 HETATM 13 C C1' BOG . . . D 2 46.305 25.691 13.994 1 104.75 ? C1' BOG 602 A 1 HETATM 14 C C2' BOG . . . D 2 47.257 24.609 14.497 1 98.5 ? C2' BOG 602 A 1 HETATM 15 C C3' BOG . . . D 2 46.441 23.338 14.657 1 92.59 ? C3' BOG 602 A 1 HETATM 16 C C4' BOG . . . D 2 45.373 23.585 15.712 1 87.62 ? C4' BOG 602 A 1 HETATM 17 C C5' BOG . . . D 2 45.835 23 17.036 1 83.93 ? C5' BOG 602 A 1 HETATM 18 C C6' BOG . . . D 2 44.769 22.059 17.568 1 82.13 ? C6' BOG 602 A 1 HETATM 19 C C7' BOG . . . D 2 44.927 21.88 19.074 1 81.08 ? C7' BOG 602 A 1 HETATM 20 C C8' BOG . . . D 2 43.641 21.272 19.636 1 80.99 ? C8' BOG 602 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #