data_5JAH # _model_server_result.job_id aIxmca6S43-qnJGvKjBx3Q _model_server_result.datetime_utc '2024-11-30 00:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5JAH # _exptl.entry_id 5JAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5,5-trimethylimidazolidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112 _cell.angle_gamma 90 _cell.entry_id 5JAH _cell.length_a 100.03 _cell.length_b 91.309 _cell.length_c 51.316 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H10 N2 O2' _chem_comp.formula_weight 142.156 _chem_comp.id 6HQ _chem_comp.mon_nstd_flag . _chem_comp.name 1,5,5-trimethylimidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 6HQ sing 1 n n C1 N2 6HQ sing 2 n n C8 N2 6HQ sing 3 n n C8 C6 6HQ sing 4 n n C8 C10 6HQ sing 5 n n N2 C3 6HQ sing 6 n n C3 O4 6HQ doub 7 n n C3 N5 6HQ sing 8 n n C6 O7 6HQ doub 9 n n C6 N5 6HQ sing 10 n n C1 H11 6HQ sing 11 n n C1 H13 6HQ sing 12 n n C1 H12 6HQ sing 13 n n C10 H19 6HQ sing 14 n n C10 H18 6HQ sing 15 n n C10 H20 6HQ sing 16 n n N5 H14 6HQ sing 17 n n C9 H15 6HQ sing 18 n n C9 H16 6HQ sing 19 n n C9 H17 6HQ sing 20 n n # _atom_sites.entry_id 5JAH _atom_sites.fract_transf_matrix[1][1] 0.009997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004039 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 235 CL CL . C 3 6HQ A 1 502 1 6HQ L01 . D 4 HOH A 1 601 28 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 74 HOH HOH . D 4 HOH A 4 604 33 HOH HOH . D 4 HOH A 5 605 36 HOH HOH . D 4 HOH A 6 606 12 HOH HOH . D 4 HOH A 7 607 113 HOH HOH . D 4 HOH A 8 608 157 HOH HOH . D 4 HOH A 9 609 62 HOH HOH . D 4 HOH A 10 610 41 HOH HOH . D 4 HOH A 11 611 6 HOH HOH . D 4 HOH A 12 612 200 HOH HOH . D 4 HOH A 13 613 56 HOH HOH . D 4 HOH A 14 614 9 HOH HOH . D 4 HOH A 15 615 11 HOH HOH . D 4 HOH A 16 616 30 HOH HOH . D 4 HOH A 17 617 91 HOH HOH . D 4 HOH A 18 618 105 HOH HOH . D 4 HOH A 19 619 97 HOH HOH . D 4 HOH A 20 620 96 HOH HOH . D 4 HOH A 21 621 3 HOH HOH . D 4 HOH A 22 622 98 HOH HOH . D 4 HOH A 23 623 69 HOH HOH . D 4 HOH A 24 624 53 HOH HOH . D 4 HOH A 25 625 229 HOH HOH . D 4 HOH A 26 626 117 HOH HOH . D 4 HOH A 27 627 2 HOH HOH . D 4 HOH A 28 628 49 HOH HOH . D 4 HOH A 29 629 45 HOH HOH . D 4 HOH A 30 630 23 HOH HOH . D 4 HOH A 31 631 230 HOH HOH . D 4 HOH A 32 632 52 HOH HOH . D 4 HOH A 33 633 21 HOH HOH . D 4 HOH A 34 634 29 HOH HOH . D 4 HOH A 35 635 38 HOH HOH . D 4 HOH A 36 636 83 HOH HOH . D 4 HOH A 37 637 56 HOH HOH . D 4 HOH A 38 638 181 HOH HOH . D 4 HOH A 39 639 101 HOH HOH . D 4 HOH A 40 640 66 HOH HOH . D 4 HOH A 41 641 25 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 30 HOH HOH . D 4 HOH A 44 644 29 HOH HOH . D 4 HOH A 45 645 75 HOH HOH . D 4 HOH A 46 646 40 HOH HOH . D 4 HOH A 47 647 223 HOH HOH . D 4 HOH A 48 648 141 HOH HOH . D 4 HOH A 49 649 8 HOH HOH . D 4 HOH A 50 650 39 HOH HOH . D 4 HOH A 51 651 231 HOH HOH . D 4 HOH A 52 652 41 HOH HOH . D 4 HOH A 53 653 35 HOH HOH . D 4 HOH A 54 654 11 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 33 HOH HOH . D 4 HOH A 57 657 10 HOH HOH . D 4 HOH A 58 658 12 HOH HOH . D 4 HOH A 59 659 34 HOH HOH . D 4 HOH A 60 660 52 HOH HOH . D 4 HOH A 61 661 108 HOH HOH . D 4 HOH A 62 662 87 HOH HOH . D 4 HOH A 63 663 193 HOH HOH . D 4 HOH A 64 664 133 HOH HOH . D 4 HOH A 65 665 5 HOH HOH . D 4 HOH A 66 666 67 HOH HOH . D 4 HOH A 67 667 46 HOH HOH . D 4 HOH A 68 668 65 HOH HOH . D 4 HOH A 69 669 80 HOH HOH . D 4 HOH A 70 670 144 HOH HOH . D 4 HOH A 71 671 1 HOH HOH . D 4 HOH A 72 672 68 HOH HOH . D 4 HOH A 73 673 82 HOH HOH . D 4 HOH A 74 674 198 HOH HOH . D 4 HOH A 75 675 18 HOH HOH . D 4 HOH A 76 676 37 HOH HOH . D 4 HOH A 77 677 224 HOH HOH . D 4 HOH A 78 678 10 HOH HOH . D 4 HOH A 79 679 197 HOH HOH . D 4 HOH A 80 680 44 HOH HOH . D 4 HOH A 81 681 20 HOH HOH . D 4 HOH A 82 682 226 HOH HOH . D 4 HOH A 83 683 131 HOH HOH . D 4 HOH A 84 684 107 HOH HOH . D 4 HOH A 85 685 172 HOH HOH . D 4 HOH A 86 686 25 HOH HOH . D 4 HOH A 87 687 88 HOH HOH . D 4 HOH A 88 688 94 HOH HOH . D 4 HOH A 89 689 115 HOH HOH . D 4 HOH A 90 690 72 HOH HOH . D 4 HOH A 91 691 211 HOH HOH . D 4 HOH A 92 692 32 HOH HOH . D 4 HOH A 93 693 48 HOH HOH . D 4 HOH A 94 694 13 HOH HOH . D 4 HOH A 95 695 22 HOH HOH . D 4 HOH A 96 696 27 HOH HOH . D 4 HOH A 97 697 135 HOH HOH . D 4 HOH A 98 698 16 HOH HOH . D 4 HOH A 99 699 84 HOH HOH . D 4 HOH A 100 700 59 HOH HOH . D 4 HOH A 101 701 175 HOH HOH . D 4 HOH A 102 702 17 HOH HOH . D 4 HOH A 103 703 90 HOH HOH . D 4 HOH A 104 704 129 HOH HOH . D 4 HOH A 105 705 17 HOH HOH . D 4 HOH A 106 706 48 HOH HOH . D 4 HOH A 107 707 5 HOH HOH . D 4 HOH A 108 708 171 HOH HOH . D 4 HOH A 109 709 95 HOH HOH . D 4 HOH A 110 710 99 HOH HOH . D 4 HOH A 111 711 138 HOH HOH . D 4 HOH A 112 712 16 HOH HOH . D 4 HOH A 113 713 126 HOH HOH . D 4 HOH A 114 714 190 HOH HOH . D 4 HOH A 115 715 173 HOH HOH . D 4 HOH A 116 716 111 HOH HOH . D 4 HOH A 117 717 51 HOH HOH . D 4 HOH A 118 718 155 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 139 HOH HOH . D 4 HOH A 121 721 57 HOH HOH . D 4 HOH A 122 722 6 HOH HOH . D 4 HOH A 123 723 8 HOH HOH . D 4 HOH A 124 724 222 HOH HOH . D 4 HOH A 125 725 212 HOH HOH . D 4 HOH A 126 726 85 HOH HOH . D 4 HOH A 127 727 122 HOH HOH . D 4 HOH A 128 728 24 HOH HOH . D 4 HOH A 129 729 206 HOH HOH . D 4 HOH A 130 730 143 HOH HOH . D 4 HOH A 131 731 24 HOH HOH . D 4 HOH A 132 732 209 HOH HOH . D 4 HOH A 133 733 54 HOH HOH . D 4 HOH A 134 734 92 HOH HOH . D 4 HOH A 135 735 7 HOH HOH . D 4 HOH A 136 736 130 HOH HOH . D 4 HOH A 137 737 28 HOH HOH . D 4 HOH A 138 738 77 HOH HOH . D 4 HOH A 139 739 158 HOH HOH . D 4 HOH A 140 740 234 HOH HOH . D 4 HOH A 141 741 123 HOH HOH . D 4 HOH A 142 742 54 HOH HOH . D 4 HOH A 143 743 201 HOH HOH . D 4 HOH A 144 744 204 HOH HOH . D 4 HOH A 145 745 42 HOH HOH . D 4 HOH A 146 746 221 HOH HOH . D 4 HOH A 147 747 34 HOH HOH . D 4 HOH A 148 748 214 HOH HOH . D 4 HOH A 149 749 63 HOH HOH . D 4 HOH A 150 750 71 HOH HOH . D 4 HOH A 151 751 140 HOH HOH . D 4 HOH A 152 752 120 HOH HOH . D 4 HOH A 153 753 21 HOH HOH . D 4 HOH A 154 754 192 HOH HOH . D 4 HOH A 155 755 3 HOH HOH . D 4 HOH A 156 756 109 HOH HOH . D 4 HOH A 157 757 53 HOH HOH . D 4 HOH A 158 758 147 HOH HOH . D 4 HOH A 159 759 43 HOH HOH . D 4 HOH A 160 760 76 HOH HOH . D 4 HOH A 161 761 178 HOH HOH . D 4 HOH A 162 762 50 HOH HOH . D 4 HOH A 163 763 70 HOH HOH . D 4 HOH A 164 764 86 HOH HOH . D 4 HOH A 165 765 179 HOH HOH . D 4 HOH A 166 766 104 HOH HOH . D 4 HOH A 167 767 45 HOH HOH . D 4 HOH A 168 768 112 HOH HOH . D 4 HOH A 169 769 132 HOH HOH . D 4 HOH A 170 770 73 HOH HOH . D 4 HOH A 171 771 44 HOH HOH . D 4 HOH A 172 772 215 HOH HOH . D 4 HOH A 173 773 32 HOH HOH . D 4 HOH A 174 774 148 HOH HOH . D 4 HOH A 175 775 186 HOH HOH . D 4 HOH A 176 776 121 HOH HOH . D 4 HOH A 177 777 23 HOH HOH . D 4 HOH A 178 778 161 HOH HOH . D 4 HOH A 179 779 93 HOH HOH . D 4 HOH A 180 780 50 HOH HOH . D 4 HOH A 181 781 128 HOH HOH . D 4 HOH A 182 782 57 HOH HOH . D 4 HOH A 183 783 60 HOH HOH . D 4 HOH A 184 784 47 HOH HOH . D 4 HOH A 185 785 188 HOH HOH . D 4 HOH A 186 786 20 HOH HOH . D 4 HOH A 187 787 124 HOH HOH . D 4 HOH A 188 788 102 HOH HOH . D 4 HOH A 189 789 100 HOH HOH . D 4 HOH A 190 790 31 HOH HOH . D 4 HOH A 191 791 27 HOH HOH . D 4 HOH A 192 792 166 HOH HOH . D 4 HOH A 193 793 216 HOH HOH . D 4 HOH A 194 794 47 HOH HOH . D 4 HOH A 195 795 9 HOH HOH . D 4 HOH A 196 796 89 HOH HOH . D 4 HOH A 197 797 174 HOH HOH . D 4 HOH A 198 798 203 HOH HOH . D 4 HOH A 199 799 116 HOH HOH . D 4 HOH A 200 800 227 HOH HOH . D 4 HOH A 201 801 19 HOH HOH . D 4 HOH A 202 802 49 HOH HOH . D 4 HOH A 203 803 137 HOH HOH . D 4 HOH A 204 804 163 HOH HOH . D 4 HOH A 205 805 220 HOH HOH . D 4 HOH A 206 806 182 HOH HOH . D 4 HOH A 207 807 4 HOH HOH . D 4 HOH A 208 808 127 HOH HOH . D 4 HOH A 209 809 114 HOH HOH . D 4 HOH A 210 810 103 HOH HOH . D 4 HOH A 211 811 81 HOH HOH . D 4 HOH A 212 812 205 HOH HOH . D 4 HOH A 213 813 18 HOH HOH . D 4 HOH A 214 814 159 HOH HOH . D 4 HOH A 215 815 218 HOH HOH . D 4 HOH A 216 816 134 HOH HOH . D 4 HOH A 217 817 195 HOH HOH . D 4 HOH A 218 818 36 HOH HOH . D 4 HOH A 219 819 170 HOH HOH . D 4 HOH A 220 820 167 HOH HOH . D 4 HOH A 221 821 15 HOH HOH . D 4 HOH A 222 822 15 HOH HOH . D 4 HOH A 223 823 7 HOH HOH . D 4 HOH A 224 824 51 HOH HOH . D 4 HOH A 225 825 176 HOH HOH . D 4 HOH A 226 826 118 HOH HOH . D 4 HOH A 227 827 142 HOH HOH . D 4 HOH A 228 828 168 HOH HOH . D 4 HOH A 229 829 55 HOH HOH . D 4 HOH A 230 830 156 HOH HOH . D 4 HOH A 231 831 106 HOH HOH . D 4 HOH A 232 832 19 HOH HOH . D 4 HOH A 233 833 165 HOH HOH . D 4 HOH A 234 834 46 HOH HOH . D 4 HOH A 235 835 210 HOH HOH . D 4 HOH A 236 836 232 HOH HOH . D 4 HOH A 237 837 202 HOH HOH . D 4 HOH A 238 838 233 HOH HOH . D 4 HOH A 239 839 189 HOH HOH . D 4 HOH A 240 840 180 HOH HOH . D 4 HOH A 241 841 217 HOH HOH . D 4 HOH A 242 842 22 HOH HOH . D 4 HOH A 243 843 79 HOH HOH . D 4 HOH A 244 844 196 HOH HOH . D 4 HOH A 245 845 26 HOH HOH . D 4 HOH A 246 846 78 HOH HOH . D 4 HOH A 247 847 183 HOH HOH . D 4 HOH A 248 848 213 HOH HOH . D 4 HOH A 249 849 208 HOH HOH . D 4 HOH A 250 850 207 HOH HOH . D 4 HOH A 251 851 164 HOH HOH . D 4 HOH A 252 852 162 HOH HOH . D 4 HOH A 253 853 13 HOH HOH . D 4 HOH A 254 854 225 HOH HOH . D 4 HOH A 255 855 228 HOH HOH . D 4 HOH A 256 856 169 HOH HOH . D 4 HOH A 257 857 61 HOH HOH . D 4 HOH A 258 858 58 HOH HOH . D 4 HOH A 259 859 151 HOH HOH . D 4 HOH A 260 860 59 HOH HOH . D 4 HOH A 261 861 64 HOH HOH . D 4 HOH A 262 862 31 HOH HOH . D 4 HOH A 263 863 199 HOH HOH . D 4 HOH A 264 864 191 HOH HOH . D 4 HOH A 265 865 185 HOH HOH . D 4 HOH A 266 866 194 HOH HOH . D 4 HOH A 267 867 37 HOH HOH . D 4 HOH A 268 868 145 HOH HOH . D 4 HOH A 269 869 149 HOH HOH . D 4 HOH A 270 870 177 HOH HOH . D 4 HOH A 271 871 43 HOH HOH . D 4 HOH A 272 872 110 HOH HOH . D 4 HOH A 273 873 150 HOH HOH . D 4 HOH A 274 874 219 HOH HOH . D 4 HOH A 275 875 35 HOH HOH . D 4 HOH A 276 876 38 HOH HOH . D 4 HOH A 277 877 146 HOH HOH . D 4 HOH A 278 878 136 HOH HOH . D 4 HOH A 279 879 187 HOH HOH . D 4 HOH A 280 880 40 HOH HOH . D 4 HOH A 281 881 184 HOH HOH . D 4 HOH A 282 882 58 HOH HOH . D 4 HOH A 283 883 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6HQ . . . C 3 29.105 1.458 -2.082 0.7 26.3 ? C1 6HQ 502 A 1 HETATM 2 C C3 6HQ . . . C 3 28.086 3.695 -1.865 0.7 21.46 ? C3 6HQ 502 A 1 HETATM 3 C C6 6HQ . . . C 3 25.843 3.234 -1.846 0.7 23.33 ? C6 6HQ 502 A 1 HETATM 4 C C8 6HQ . . . C 3 26.574 1.898 -2.041 0.7 22.61 ? C8 6HQ 502 A 1 HETATM 5 C C10 6HQ . . . C 3 26.279 0.962 -0.883 0.7 23.77 ? C10 6HQ 502 A 1 HETATM 6 N N2 6HQ . . . C 3 27.963 2.355 -2.023 0.7 24.78 ? N2 6HQ 502 A 1 HETATM 7 O O4 6HQ . . . C 3 29.114 4.344 -1.847 0.7 16.19 ? O4 6HQ 502 A 1 HETATM 8 N N5 6HQ . . . C 3 26.798 4.197 -1.729 0.7 23.34 ? N5 6HQ 502 A 1 HETATM 9 O O7 6HQ . . . C 3 24.646 3.404 -1.802 0.7 29.22 ? O7 6HQ 502 A 1 HETATM 10 C C9 6HQ . . . C 3 26.189 1.277 -3.385 0.7 18.74 ? C9 6HQ 502 A 1 HETATM 11 H H11 6HQ . . . C 3 29.761 1.807 -2.715 0.7 26.77 ? H11 6HQ 502 A 1 HETATM 12 H H13 6HQ . . . C 3 28.811 0.574 -2.374 0.7 27.2 ? H13 6HQ 502 A 1 HETATM 13 H H12 6HQ . . . C 3 29.511 1.39 -1.198 0.7 25.61 ? H12 6HQ 502 A 1 HETATM 14 H H19 6HQ . . . C 3 26.739 0.112 -1.025 0.7 24.77 ? H19 6HQ 502 A 1 HETATM 15 H H18 6HQ . . . C 3 25.317 0.803 -0.828 0.7 23.72 ? H18 6HQ 502 A 1 HETATM 16 H H20 6HQ . . . C 3 26.59 1.364 -0.048 0.7 23.32 ? H20 6HQ 502 A 1 HETATM 17 H H14 6HQ . . . C 3 26.611 5.073 -1.633 0.7 23.95 ? H14 6HQ 502 A 1 HETATM 18 H H15 6HQ . . . C 3 26.376 1.909 -4.103 0.7 18.9 ? H15 6HQ 502 A 1 HETATM 19 H H16 6HQ . . . C 3 26.705 0.462 -3.529 0.7 17.08 ? H16 6HQ 502 A 1 HETATM 20 H H17 6HQ . . . C 3 25.238 1.061 -3.385 0.7 18.31 ? H17 6HQ 502 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #