data_5JAM # _model_server_result.job_id UxuMnIIuEEpwOFy_FztN9A _model_server_result.datetime_utc '2024-11-07 23:44:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5JAM # _exptl.entry_id 5JAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JAM _cell.length_a 102.872 _cell.length_b 102.872 _cell.length_c 84.794 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 246 n n PA O2A NAI sing 247 n n PA O5B NAI sing 248 n n PA O3 NAI sing 249 n n O2A HOA2 NAI sing 250 n n O5B C5B NAI sing 251 n n C5B C4B NAI sing 252 n n C5B H51A NAI sing 253 n n C5B H52A NAI sing 254 n n C4B O4B NAI sing 255 n n C4B C3B NAI sing 256 n n C4B H4B NAI sing 257 n n O4B C1B NAI sing 258 n n C3B O3B NAI sing 259 n n C3B C2B NAI sing 260 n n C3B H3B NAI sing 261 n n O3B HO3A NAI sing 262 n n C2B O2B NAI sing 263 n n C2B C1B NAI sing 264 n n C2B H2B NAI sing 265 n n O2B HO2A NAI sing 266 n n C1B N9A NAI sing 267 n n C1B H1B NAI sing 268 n n N9A C8A NAI sing 269 n y N9A C4A NAI sing 270 n y C8A N7A NAI doub 271 n y C8A H8A NAI sing 272 n n N7A C5A NAI sing 273 n y C5A C6A NAI sing 274 n y C5A C4A NAI doub 275 n y C6A N6A NAI sing 276 n n C6A N1A NAI doub 277 n y N6A H61A NAI sing 278 n n N6A H62A NAI sing 279 n n N1A C2A NAI sing 280 n y C2A N3A NAI doub 281 n y C2A H2A NAI sing 282 n n N3A C4A NAI sing 283 n y O3 PN NAI sing 284 n n PN O1N NAI sing 285 n n PN O2N NAI doub 286 n n PN O5D NAI sing 287 n n O1N HO1N NAI sing 288 n n O5D C5D NAI sing 289 n n C5D C4D NAI sing 290 n n C5D H51N NAI sing 291 n n C5D H52N NAI sing 292 n n C4D O4D NAI sing 293 n n C4D C3D NAI sing 294 n n C4D H4D NAI sing 295 n n O4D C1D NAI sing 296 n n C3D O3D NAI sing 297 n n C3D C2D NAI sing 298 n n C3D H3D NAI sing 299 n n O3D HO3N NAI sing 300 n n C2D O2D NAI sing 301 n n C2D C1D NAI sing 302 n n C2D H2D NAI sing 303 n n O2D HO2N NAI sing 304 n n C1D N1N NAI sing 305 n n C1D H1D NAI sing 306 n n N1N C2N NAI sing 307 n n N1N C6N NAI sing 308 n n C2N C3N NAI doub 309 n n C2N H2N NAI sing 310 n n C3N C7N NAI sing 311 n n C3N C4N NAI sing 312 n n C7N O7N NAI doub 313 n n C7N N7N NAI sing 314 n n N7N H71N NAI sing 315 n n N7N H72N NAI sing 316 n n C4N C5N NAI sing 317 n n C4N H4N NAI sing 318 n n C4N H42N NAI sing 319 n n C5N C6N NAI doub 320 n n C5N H5N NAI sing 321 n n C6N H6N NAI sing 322 n n # _atom_sites.entry_id 5JAM _atom_sites.fract_transf_matrix[1][1] 0.009721 _atom_sites.fract_transf_matrix[1][2] 0.005612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 401 1 NAI NAI . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 4 HOH A 1 501 300 HOH HOH . F 4 HOH A 2 502 289 HOH HOH . F 4 HOH A 3 503 309 HOH HOH . F 4 HOH A 4 504 312 HOH HOH . F 4 HOH A 5 505 314 HOH HOH . F 4 HOH A 6 506 307 HOH HOH . F 4 HOH A 7 507 39 HOH HOH . F 4 HOH A 8 508 310 HOH HOH . F 4 HOH A 9 509 282 HOH HOH . F 4 HOH A 10 510 270 HOH HOH . F 4 HOH A 11 511 301 HOH HOH . F 4 HOH A 12 512 20 HOH HOH . F 4 HOH A 13 513 15 HOH HOH . F 4 HOH A 14 514 304 HOH HOH . F 4 HOH A 15 515 305 HOH HOH . F 4 HOH A 16 516 276 HOH HOH . F 4 HOH A 17 517 25 HOH HOH . F 4 HOH A 18 518 69 HOH HOH . F 4 HOH A 19 519 37 HOH HOH . F 4 HOH A 20 520 18 HOH HOH . F 4 HOH A 21 521 299 HOH HOH . F 4 HOH A 22 522 23 HOH HOH . F 4 HOH A 23 523 30 HOH HOH . F 4 HOH A 24 524 46 HOH HOH . F 4 HOH A 25 525 280 HOH HOH . F 4 HOH A 26 526 75 HOH HOH . F 4 HOH A 27 527 290 HOH HOH . F 4 HOH A 28 528 285 HOH HOH . F 4 HOH A 29 529 19 HOH HOH . F 4 HOH A 30 530 38 HOH HOH . F 4 HOH A 31 531 6 HOH HOH . F 4 HOH A 32 532 43 HOH HOH . F 4 HOH A 33 533 5 HOH HOH . F 4 HOH A 34 534 34 HOH HOH . F 4 HOH A 35 535 7 HOH HOH . F 4 HOH A 36 536 102 HOH HOH . F 4 HOH A 37 537 40 HOH HOH . F 4 HOH A 38 538 287 HOH HOH . F 4 HOH A 39 539 271 HOH HOH . F 4 HOH A 40 540 1 HOH HOH . F 4 HOH A 41 541 302 HOH HOH . F 4 HOH A 42 542 12 HOH HOH . F 4 HOH A 43 543 306 HOH HOH . F 4 HOH A 44 544 2 HOH HOH . F 4 HOH A 45 545 68 HOH HOH . F 4 HOH A 46 546 294 HOH HOH . F 4 HOH A 47 547 27 HOH HOH . F 4 HOH A 48 548 4 HOH HOH . F 4 HOH A 49 549 273 HOH HOH . F 4 HOH A 50 550 17 HOH HOH . F 4 HOH A 51 551 99 HOH HOH . F 4 HOH A 52 552 28 HOH HOH . F 4 HOH A 53 553 29 HOH HOH . F 4 HOH A 54 554 286 HOH HOH . F 4 HOH A 55 555 272 HOH HOH . F 4 HOH A 56 556 247 HOH HOH . F 4 HOH A 57 557 295 HOH HOH . F 4 HOH A 58 558 67 HOH HOH . F 4 HOH A 59 559 288 HOH HOH . F 4 HOH A 60 560 48 HOH HOH . F 4 HOH A 61 561 21 HOH HOH . F 4 HOH A 62 562 56 HOH HOH . F 4 HOH A 63 563 60 HOH HOH . F 4 HOH A 64 564 24 HOH HOH . F 4 HOH A 65 565 62 HOH HOH . F 4 HOH A 66 566 22 HOH HOH . F 4 HOH A 67 567 16 HOH HOH . F 4 HOH A 68 568 71 HOH HOH . F 4 HOH A 69 569 8 HOH HOH . F 4 HOH A 70 570 3 HOH HOH . F 4 HOH A 71 571 76 HOH HOH . F 4 HOH A 72 572 33 HOH HOH . F 4 HOH A 73 573 11 HOH HOH . F 4 HOH A 74 574 84 HOH HOH . F 4 HOH A 75 575 293 HOH HOH . F 4 HOH A 76 576 82 HOH HOH . F 4 HOH A 77 577 26 HOH HOH . F 4 HOH A 78 578 64 HOH HOH . F 4 HOH A 79 579 32 HOH HOH . F 4 HOH A 80 580 55 HOH HOH . F 4 HOH A 81 581 96 HOH HOH . F 4 HOH A 82 582 14 HOH HOH . F 4 HOH A 83 583 31 HOH HOH . F 4 HOH A 84 584 313 HOH HOH . F 4 HOH A 85 585 284 HOH HOH . F 4 HOH A 86 586 95 HOH HOH . F 4 HOH A 87 587 13 HOH HOH . F 4 HOH A 88 588 283 HOH HOH . F 4 HOH A 89 589 311 HOH HOH . F 4 HOH A 90 590 279 HOH HOH . F 4 HOH A 91 591 100 HOH HOH . F 4 HOH A 92 592 63 HOH HOH . F 4 HOH A 93 593 242 HOH HOH . F 4 HOH A 94 594 243 HOH HOH . F 4 HOH A 95 595 10 HOH HOH . F 4 HOH A 96 596 274 HOH HOH . F 4 HOH A 97 597 9 HOH HOH . F 4 HOH A 98 598 275 HOH HOH . F 4 HOH A 99 599 278 HOH HOH . F 4 HOH A 100 600 315 HOH HOH . F 4 HOH A 101 601 36 HOH HOH . F 4 HOH A 102 602 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 5.185 -38.556 -4.198 1 44.05 ? PA NAI 401 A 1 HETATM 2 O O1A NAI . . . B 2 5.784 -39.906 -4.08 1 38.12 ? O1A NAI 401 A 1 HETATM 3 O O2A NAI . . . B 2 4.266 -37.958 -3.127 1 44.5 ? O2A NAI 401 A 1 HETATM 4 O O5B NAI . . . B 2 6.345 -37.401 -4.143 1 39.76 ? O5B NAI 401 A 1 HETATM 5 C C5B NAI . . . B 2 6.026 -36.002 -3.971 1 33.32 ? C5B NAI 401 A 1 HETATM 6 C C4B NAI . . . B 2 7.286 -35.279 -3.567 1 30.05 ? C4B NAI 401 A 1 HETATM 7 O O4B NAI . . . B 2 7.046 -33.852 -3.577 1 27.35 ? O4B NAI 401 A 1 HETATM 8 C C3B NAI . . . B 2 7.801 -35.605 -2.163 1 28.44 ? C3B NAI 401 A 1 HETATM 9 O O3B NAI . . . B 2 9.223 -35.599 -2.144 1 25.43 ? O3B NAI 401 A 1 HETATM 10 C C2B NAI . . . B 2 7.241 -34.454 -1.329 1 26.87 ? C2B NAI 401 A 1 HETATM 11 O O2B NAI . . . B 2 8.01 -34.228 -0.154 1 26.59 ? O2B NAI 401 A 1 HETATM 12 C C1B NAI . . . B 2 7.408 -33.312 -2.322 1 27.07 ? C1B NAI 401 A 1 HETATM 13 N N9A NAI . . . B 2 6.586 -32.136 -2.063 1 26.68 ? N9A NAI 401 A 1 HETATM 14 C C8A NAI . . . B 2 5.219 -32.046 -2.085 1 27.18 ? C8A NAI 401 A 1 HETATM 15 N N7A NAI . . . B 2 4.762 -30.834 -1.881 1 28.1 ? N7A NAI 401 A 1 HETATM 16 C C5A NAI . . . B 2 5.907 -30.074 -1.709 1 27.34 ? C5A NAI 401 A 1 HETATM 17 C C6A NAI . . . B 2 6.111 -28.698 -1.481 1 30.05 ? C6A NAI 401 A 1 HETATM 18 N N6A NAI . . . B 2 5.12 -27.81 -1.369 1 32.54 ? N6A NAI 401 A 1 HETATM 19 N N1A NAI . . . B 2 7.385 -28.261 -1.376 1 26.95 ? N1A NAI 401 A 1 HETATM 20 C C2A NAI . . . B 2 8.381 -29.145 -1.49 1 27.28 ? C2A NAI 401 A 1 HETATM 21 N N3A NAI . . . B 2 8.311 -30.462 -1.704 1 25.32 ? N3A NAI 401 A 1 HETATM 22 C C4A NAI . . . B 2 7.04 -30.864 -1.81 1 26.19 ? C4A NAI 401 A 1 HETATM 23 O O3 NAI . . . B 2 4.277 -38.866 -5.482 1 48.4 ? O3 NAI 401 A 1 HETATM 24 P PN NAI . . . B 2 4.853 -38.984 -6.979 1 46.14 ? PN NAI 401 A 1 HETATM 25 O O1N NAI . . . B 2 6.212 -39.683 -6.901 1 38.53 ? O1N NAI 401 A 1 HETATM 26 O O2N NAI . . . B 2 3.634 -39.622 -7.525 1 47.3 ? O2N NAI 401 A 1 HETATM 27 O O5D NAI . . . B 2 5.223 -37.609 -7.763 1 48.67 ? O5D NAI 401 A 1 HETATM 28 C C5D NAI . . . B 2 6.482 -37.417 -8.443 1 51.18 ? C5D NAI 401 A 1 HETATM 29 C C4D NAI . . . B 2 6.195 -37.042 -9.874 1 49.79 ? C4D NAI 401 A 1 HETATM 30 O O4D NAI . . . B 2 5.985 -38.244 -10.651 1 48.96 ? O4D NAI 401 A 1 HETATM 31 C C3D NAI . . . B 2 4.954 -36.169 -10.084 1 54.34 ? C3D NAI 401 A 1 HETATM 32 O O3D NAI . . . B 2 5.236 -35.102 -10.982 1 60.16 ? O3D NAI 401 A 1 HETATM 33 C C2D NAI . . . B 2 3.93 -37.151 -10.663 1 50.15 ? C2D NAI 401 A 1 HETATM 34 O O2D NAI . . . B 2 2.983 -36.512 -11.512 1 48.42 ? O2D NAI 401 A 1 HETATM 35 C C1D NAI . . . B 2 4.846 -38.067 -11.465 1 45.43 ? C1D NAI 401 A 1 HETATM 36 N N1N NAI . . . B 2 4.307 -39.419 -11.8 1 39.49 ? N1N NAI 401 A 1 HETATM 37 C C2N NAI . . . B 2 3.633 -40.228 -10.863 1 33.95 ? C2N NAI 401 A 1 HETATM 38 C C3N NAI . . . B 2 3.153 -41.443 -11.19 1 34.79 ? C3N NAI 401 A 1 HETATM 39 C C7N NAI . . . B 2 2.514 -42.319 -10.154 1 36.04 ? C7N NAI 401 A 1 HETATM 40 O O7N NAI . . . B 2 1.932 -43.344 -10.544 1 31.46 ? O7N NAI 401 A 1 HETATM 41 N N7N NAI . . . B 2 2.593 -42.005 -8.871 1 36.89 ? N7N NAI 401 A 1 HETATM 42 C C4N NAI . . . B 2 3.258 -41.992 -12.563 1 35.06 ? C4N NAI 401 A 1 HETATM 43 C C5N NAI . . . B 2 4.06 -41.119 -13.45 1 35.53 ? C5N NAI 401 A 1 HETATM 44 C C6N NAI . . . B 2 4.527 -39.94 -13.093 1 36.63 ? C6N NAI 401 A 1 HETATM 45 H HOA2 NAI . . . B 2 3.46 -38.38 -2.729 1 53.4 ? HOA2 NAI 401 A 1 HETATM 46 H H51A NAI . . . B 2 5.27 -35.955 -3.188 1 39.98 ? H51A NAI 401 A 1 HETATM 47 H H52A NAI . . . B 2 5.601 -35.569 -4.875 1 39.98 ? H52A NAI 401 A 1 HETATM 48 H H4B NAI . . . B 2 8.055 -35.43 -4.323 1 36.06 ? H4B NAI 401 A 1 HETATM 49 H H3B NAI . . . B 2 7.478 -36.588 -1.822 1 34.13 ? H3B NAI 401 A 1 HETATM 50 H HO3A NAI . . . B 2 9.533 -35.316 -1.244 1 30.51 ? HO3A NAI 401 A 1 HETATM 51 H H2B NAI . . . B 2 6.197 -34.645 -1.083 1 32.24 ? H2B NAI 401 A 1 HETATM 52 H HO2A NAI . . . B 2 7.52 -34.67 0.589 1 31.9 ? HO2A NAI 401 A 1 HETATM 53 H H1B NAI . . . B 2 8.443 -32.983 -2.392 1 32.49 ? H1B NAI 401 A 1 HETATM 54 H H8A NAI . . . B 2 4.554 -32.892 -2.255 1 32.62 ? H8A NAI 401 A 1 HETATM 55 H H61A NAI . . . B 2 4.157 -28.12 -1.45 1 39.05 ? H61A NAI 401 A 1 HETATM 56 H H62A NAI . . . B 2 5.295 -26.824 -1.204 1 39.05 ? H62A NAI 401 A 1 HETATM 57 H H2A NAI . . . B 2 9.377 -28.717 -1.394 1 32.74 ? H2A NAI 401 A 1 HETATM 58 H HO1N NAI . . . B 2 6.352 -40.663 -6.821 1 46.24 ? HO1N NAI 401 A 1 HETATM 59 H H51N NAI . . . B 2 7.054 -38.342 -8.392 1 61.41 ? H51N NAI 401 A 1 HETATM 60 H H52N NAI . . . B 2 7.034 -36.624 -7.941 1 61.41 ? H52N NAI 401 A 1 HETATM 61 H H4D NAI . . . B 2 7.074 -36.541 -10.278 1 59.74 ? H4D NAI 401 A 1 HETATM 62 H H3D NAI . . . B 2 4.608 -35.769 -9.132 1 65.2 ? H3D NAI 401 A 1 HETATM 63 H HO3N NAI . . . B 2 5.094 -34.259 -10.478 1 72.19 ? HO3N NAI 401 A 1 HETATM 64 H H2D NAI . . . B 2 3.424 -37.682 -9.857 1 60.18 ? H2D NAI 401 A 1 HETATM 65 H HO2N NAI . . . B 2 2.128 -36.52 -11.006 1 58.1 ? HO2N NAI 401 A 1 HETATM 66 H H1D NAI . . . B 2 5.157 -37.591 -12.393 1 54.51 ? H1D NAI 401 A 1 HETATM 67 H H2N NAI . . . B 2 3.522 -39.816 -9.861 1 40.74 ? H2N NAI 401 A 1 HETATM 68 H H71N NAI . . . B 2 3.088 -41.168 -8.576 1 44.27 ? H71N NAI 401 A 1 HETATM 69 H H72N NAI . . . B 2 2.187 -42.547 -8.115 1 44.27 ? H72N NAI 401 A 1 HETATM 70 H H4N NAI . . . B 2 2.267 -42.117 -12.998 1 42.07 ? H4N NAI 401 A 1 HETATM 71 H H42N NAI . . . B 2 3.678 -42.997 -12.55 1 42.07 ? H42N NAI 401 A 1 HETATM 72 H H5N NAI . . . B 2 4.257 -41.504 -14.449 1 42.64 ? H5N NAI 401 A 1 HETATM 73 H H6N NAI . . . B 2 5.103 -39.309 -13.77 1 43.96 ? H6N NAI 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #