data_5JAM
#
_model_server_result.job_id            z7lAJ_BmqK1xlBQpeXUGcA 
_model_server_result.datetime_utc      '2024-12-01 19:08:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jam 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5JAM 
#
_exptl.entry_id    5JAM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5JAM 
_cell.length_a            102.872 
_cell.length_b            102.872 
_cell.length_c            84.794 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JAM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5JAM 
_atom_sites.fract_transf_matrix[1][1]    0.009721 
_atom_sites.fract_transf_matrix[1][2]    0.005612 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011225 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAI A 1 401 1 NAI NAI . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 3 DMS A 1 404 3 DMS DMS . 
F 4 HOH A 1 501 300 HOH HOH . 
F 4 HOH A 2 502 289 HOH HOH . 
F 4 HOH A 3 503 309 HOH HOH . 
F 4 HOH A 4 504 312 HOH HOH . 
F 4 HOH A 5 505 314 HOH HOH . 
F 4 HOH A 6 506 307 HOH HOH . 
F 4 HOH A 7 507 39 HOH HOH . 
F 4 HOH A 8 508 310 HOH HOH . 
F 4 HOH A 9 509 282 HOH HOH . 
F 4 HOH A 10 510 270 HOH HOH . 
F 4 HOH A 11 511 301 HOH HOH . 
F 4 HOH A 12 512 20 HOH HOH . 
F 4 HOH A 13 513 15 HOH HOH . 
F 4 HOH A 14 514 304 HOH HOH . 
F 4 HOH A 15 515 305 HOH HOH . 
F 4 HOH A 16 516 276 HOH HOH . 
F 4 HOH A 17 517 25 HOH HOH . 
F 4 HOH A 18 518 69 HOH HOH . 
F 4 HOH A 19 519 37 HOH HOH . 
F 4 HOH A 20 520 18 HOH HOH . 
F 4 HOH A 21 521 299 HOH HOH . 
F 4 HOH A 22 522 23 HOH HOH . 
F 4 HOH A 23 523 30 HOH HOH . 
F 4 HOH A 24 524 46 HOH HOH . 
F 4 HOH A 25 525 280 HOH HOH . 
F 4 HOH A 26 526 75 HOH HOH . 
F 4 HOH A 27 527 290 HOH HOH . 
F 4 HOH A 28 528 285 HOH HOH . 
F 4 HOH A 29 529 19 HOH HOH . 
F 4 HOH A 30 530 38 HOH HOH . 
F 4 HOH A 31 531 6 HOH HOH . 
F 4 HOH A 32 532 43 HOH HOH . 
F 4 HOH A 33 533 5 HOH HOH . 
F 4 HOH A 34 534 34 HOH HOH . 
F 4 HOH A 35 535 7 HOH HOH . 
F 4 HOH A 36 536 102 HOH HOH . 
F 4 HOH A 37 537 40 HOH HOH . 
F 4 HOH A 38 538 287 HOH HOH . 
F 4 HOH A 39 539 271 HOH HOH . 
F 4 HOH A 40 540 1 HOH HOH . 
F 4 HOH A 41 541 302 HOH HOH . 
F 4 HOH A 42 542 12 HOH HOH . 
F 4 HOH A 43 543 306 HOH HOH . 
F 4 HOH A 44 544 2 HOH HOH . 
F 4 HOH A 45 545 68 HOH HOH . 
F 4 HOH A 46 546 294 HOH HOH . 
F 4 HOH A 47 547 27 HOH HOH . 
F 4 HOH A 48 548 4 HOH HOH . 
F 4 HOH A 49 549 273 HOH HOH . 
F 4 HOH A 50 550 17 HOH HOH . 
F 4 HOH A 51 551 99 HOH HOH . 
F 4 HOH A 52 552 28 HOH HOH . 
F 4 HOH A 53 553 29 HOH HOH . 
F 4 HOH A 54 554 286 HOH HOH . 
F 4 HOH A 55 555 272 HOH HOH . 
F 4 HOH A 56 556 247 HOH HOH . 
F 4 HOH A 57 557 295 HOH HOH . 
F 4 HOH A 58 558 67 HOH HOH . 
F 4 HOH A 59 559 288 HOH HOH . 
F 4 HOH A 60 560 48 HOH HOH . 
F 4 HOH A 61 561 21 HOH HOH . 
F 4 HOH A 62 562 56 HOH HOH . 
F 4 HOH A 63 563 60 HOH HOH . 
F 4 HOH A 64 564 24 HOH HOH . 
F 4 HOH A 65 565 62 HOH HOH . 
F 4 HOH A 66 566 22 HOH HOH . 
F 4 HOH A 67 567 16 HOH HOH . 
F 4 HOH A 68 568 71 HOH HOH . 
F 4 HOH A 69 569 8 HOH HOH . 
F 4 HOH A 70 570 3 HOH HOH . 
F 4 HOH A 71 571 76 HOH HOH . 
F 4 HOH A 72 572 33 HOH HOH . 
F 4 HOH A 73 573 11 HOH HOH . 
F 4 HOH A 74 574 84 HOH HOH . 
F 4 HOH A 75 575 293 HOH HOH . 
F 4 HOH A 76 576 82 HOH HOH . 
F 4 HOH A 77 577 26 HOH HOH . 
F 4 HOH A 78 578 64 HOH HOH . 
F 4 HOH A 79 579 32 HOH HOH . 
F 4 HOH A 80 580 55 HOH HOH . 
F 4 HOH A 81 581 96 HOH HOH . 
F 4 HOH A 82 582 14 HOH HOH . 
F 4 HOH A 83 583 31 HOH HOH . 
F 4 HOH A 84 584 313 HOH HOH . 
F 4 HOH A 85 585 284 HOH HOH . 
F 4 HOH A 86 586 95 HOH HOH . 
F 4 HOH A 87 587 13 HOH HOH . 
F 4 HOH A 88 588 283 HOH HOH . 
F 4 HOH A 89 589 311 HOH HOH . 
F 4 HOH A 90 590 279 HOH HOH . 
F 4 HOH A 91 591 100 HOH HOH . 
F 4 HOH A 92 592 63 HOH HOH . 
F 4 HOH A 93 593 242 HOH HOH . 
F 4 HOH A 94 594 243 HOH HOH . 
F 4 HOH A 95 595 10 HOH HOH . 
F 4 HOH A 96 596 274 HOH HOH . 
F 4 HOH A 97 597 9 HOH HOH . 
F 4 HOH A 98 598 275 HOH HOH . 
F 4 HOH A 99 599 278 HOH HOH . 
F 4 HOH A 100 600 315 HOH HOH . 
F 4 HOH A 101 601 36 HOH HOH . 
F 4 HOH A 102 602 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 10.352 -56.988 1.671 1 61.4 ? S DMS 403 A 1 
HETATM 2 O O DMS . . . D 3 11.836 -57.164 1.587 1 61.83 ? O DMS 403 A 1 
HETATM 3 C C1 DMS . . . D 3 9.825 -55.721 0.488 1 59.2 ? C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . D 3 9.508 -58.449 1.01 1 58.52 ? C2 DMS 403 A 1 
HETATM 5 H H11 DMS . . . D 3 10.233 -54.785 0.767 1 71.04 ? H11 DMS 403 A 1 
HETATM 6 H H12 DMS . . . D 3 8.768 -55.659 0.485 1 71.04 ? H12 DMS 403 A 1 
HETATM 7 H H13 DMS . . . D 3 10.165 -55.98 -0.481 1 71.04 ? H13 DMS 403 A 1 
HETATM 8 H H21 DMS . . . D 3 9.718 -59.286 1.623 1 70.22 ? H21 DMS 403 A 1 
HETATM 9 H H22 DMS . . . D 3 9.848 -58.638 0.026 1 70.22 ? H22 DMS 403 A 1 
HETATM 10 H H23 DMS . . . D 3 8.463 -58.276 0.995 1 70.22 ? H23 DMS 403 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           43 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           793 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           10 
#