data_5JAQ # _model_server_result.job_id G3pjUYUNz238csDTSW9ozg _model_server_result.datetime_utc '2024-12-05 02:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jaq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5JAQ # _exptl.entry_id 5JAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JAQ _cell.length_a 102.215 _cell.length_b 102.215 _cell.length_c 84.461 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5JAQ _atom_sites.fract_transf_matrix[1][1] 0.009783 _atom_sites.fract_transf_matrix[1][2] 0.005648 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 401 1 NAI NAI . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 4 HOH A 1 501 251 HOH HOH . F 4 HOH A 2 502 117 HOH HOH . F 4 HOH A 3 503 261 HOH HOH . F 4 HOH A 4 504 207 HOH HOH . F 4 HOH A 5 505 100 HOH HOH . F 4 HOH A 6 506 82 HOH HOH . F 4 HOH A 7 507 155 HOH HOH . F 4 HOH A 8 508 120 HOH HOH . F 4 HOH A 9 509 109 HOH HOH . F 4 HOH A 10 510 124 HOH HOH . F 4 HOH A 11 511 101 HOH HOH . F 4 HOH A 12 512 183 HOH HOH . F 4 HOH A 13 513 181 HOH HOH . F 4 HOH A 14 514 149 HOH HOH . F 4 HOH A 15 515 76 HOH HOH . F 4 HOH A 16 516 250 HOH HOH . F 4 HOH A 17 517 157 HOH HOH . F 4 HOH A 18 518 108 HOH HOH . F 4 HOH A 19 519 206 HOH HOH . F 4 HOH A 20 520 79 HOH HOH . F 4 HOH A 21 521 292 HOH HOH . F 4 HOH A 22 522 106 HOH HOH . F 4 HOH A 23 523 171 HOH HOH . F 4 HOH A 24 524 248 HOH HOH . F 4 HOH A 25 525 64 HOH HOH . F 4 HOH A 26 526 297 HOH HOH . F 4 HOH A 27 527 274 HOH HOH . F 4 HOH A 28 528 298 HOH HOH . F 4 HOH A 29 529 94 HOH HOH . F 4 HOH A 30 530 160 HOH HOH . F 4 HOH A 31 531 2 HOH HOH . F 4 HOH A 32 532 197 HOH HOH . F 4 HOH A 33 533 1 HOH HOH . F 4 HOH A 34 534 135 HOH HOH . F 4 HOH A 35 535 49 HOH HOH . F 4 HOH A 36 536 263 HOH HOH . F 4 HOH A 37 537 266 HOH HOH . F 4 HOH A 38 538 3 HOH HOH . F 4 HOH A 39 539 81 HOH HOH . F 4 HOH A 40 540 43 HOH HOH . F 4 HOH A 41 541 61 HOH HOH . F 4 HOH A 42 542 212 HOH HOH . F 4 HOH A 43 543 70 HOH HOH . F 4 HOH A 44 544 60 HOH HOH . F 4 HOH A 45 545 77 HOH HOH . F 4 HOH A 46 546 175 HOH HOH . F 4 HOH A 47 547 202 HOH HOH . F 4 HOH A 48 548 99 HOH HOH . F 4 HOH A 49 549 172 HOH HOH . F 4 HOH A 50 550 139 HOH HOH . F 4 HOH A 51 551 267 HOH HOH . F 4 HOH A 52 552 209 HOH HOH . F 4 HOH A 53 553 87 HOH HOH . F 4 HOH A 54 554 38 HOH HOH . F 4 HOH A 55 555 53 HOH HOH . F 4 HOH A 56 556 144 HOH HOH . F 4 HOH A 57 557 159 HOH HOH . F 4 HOH A 58 558 153 HOH HOH . F 4 HOH A 59 559 121 HOH HOH . F 4 HOH A 60 560 188 HOH HOH . F 4 HOH A 61 561 173 HOH HOH . F 4 HOH A 62 562 12 HOH HOH . F 4 HOH A 63 563 114 HOH HOH . F 4 HOH A 64 564 219 HOH HOH . F 4 HOH A 65 565 23 HOH HOH . F 4 HOH A 66 566 112 HOH HOH . F 4 HOH A 67 567 73 HOH HOH . F 4 HOH A 68 568 137 HOH HOH . F 4 HOH A 69 569 119 HOH HOH . F 4 HOH A 70 570 128 HOH HOH . F 4 HOH A 71 571 55 HOH HOH . F 4 HOH A 72 572 63 HOH HOH . F 4 HOH A 73 573 22 HOH HOH . F 4 HOH A 74 574 45 HOH HOH . F 4 HOH A 75 575 234 HOH HOH . F 4 HOH A 76 576 123 HOH HOH . F 4 HOH A 77 577 54 HOH HOH . F 4 HOH A 78 578 271 HOH HOH . F 4 HOH A 79 579 301 HOH HOH . F 4 HOH A 80 580 25 HOH HOH . F 4 HOH A 81 581 9 HOH HOH . F 4 HOH A 82 582 289 HOH HOH . F 4 HOH A 83 583 204 HOH HOH . F 4 HOH A 84 584 233 HOH HOH . F 4 HOH A 85 585 283 HOH HOH . F 4 HOH A 86 586 167 HOH HOH . F 4 HOH A 87 587 200 HOH HOH . F 4 HOH A 88 588 27 HOH HOH . F 4 HOH A 89 589 115 HOH HOH . F 4 HOH A 90 590 86 HOH HOH . F 4 HOH A 91 591 140 HOH HOH . F 4 HOH A 92 592 184 HOH HOH . F 4 HOH A 93 593 134 HOH HOH . F 4 HOH A 94 594 28 HOH HOH . F 4 HOH A 95 595 50 HOH HOH . F 4 HOH A 96 596 4 HOH HOH . F 4 HOH A 97 597 281 HOH HOH . F 4 HOH A 98 598 90 HOH HOH . F 4 HOH A 99 599 84 HOH HOH . F 4 HOH A 100 600 67 HOH HOH . F 4 HOH A 101 601 118 HOH HOH . F 4 HOH A 102 602 132 HOH HOH . F 4 HOH A 103 603 193 HOH HOH . F 4 HOH A 104 604 75 HOH HOH . F 4 HOH A 105 605 296 HOH HOH . F 4 HOH A 106 606 14 HOH HOH . F 4 HOH A 107 607 122 HOH HOH . F 4 HOH A 108 608 48 HOH HOH . F 4 HOH A 109 609 130 HOH HOH . F 4 HOH A 110 610 40 HOH HOH . F 4 HOH A 111 611 146 HOH HOH . F 4 HOH A 112 612 30 HOH HOH . F 4 HOH A 113 613 237 HOH HOH . F 4 HOH A 114 614 41 HOH HOH . F 4 HOH A 115 615 205 HOH HOH . F 4 HOH A 116 616 42 HOH HOH . F 4 HOH A 117 617 7 HOH HOH . F 4 HOH A 118 618 220 HOH HOH . F 4 HOH A 119 619 127 HOH HOH . F 4 HOH A 120 620 245 HOH HOH . F 4 HOH A 121 621 151 HOH HOH . F 4 HOH A 122 622 13 HOH HOH . F 4 HOH A 123 623 277 HOH HOH . F 4 HOH A 124 624 69 HOH HOH . F 4 HOH A 125 625 29 HOH HOH . F 4 HOH A 126 626 203 HOH HOH . F 4 HOH A 127 627 89 HOH HOH . F 4 HOH A 128 628 24 HOH HOH . F 4 HOH A 129 629 300 HOH HOH . F 4 HOH A 130 630 279 HOH HOH . F 4 HOH A 131 631 19 HOH HOH . F 4 HOH A 132 632 6 HOH HOH . F 4 HOH A 133 633 51 HOH HOH . F 4 HOH A 134 634 113 HOH HOH . F 4 HOH A 135 635 191 HOH HOH . F 4 HOH A 136 636 35 HOH HOH . F 4 HOH A 137 637 142 HOH HOH . F 4 HOH A 138 638 32 HOH HOH . F 4 HOH A 139 639 66 HOH HOH . F 4 HOH A 140 640 275 HOH HOH . F 4 HOH A 141 641 152 HOH HOH . F 4 HOH A 142 642 85 HOH HOH . F 4 HOH A 143 643 226 HOH HOH . F 4 HOH A 144 644 46 HOH HOH . F 4 HOH A 145 645 201 HOH HOH . F 4 HOH A 146 646 210 HOH HOH . F 4 HOH A 147 647 52 HOH HOH . F 4 HOH A 148 648 129 HOH HOH . F 4 HOH A 149 649 10 HOH HOH . F 4 HOH A 150 650 216 HOH HOH . F 4 HOH A 151 651 78 HOH HOH . F 4 HOH A 152 652 44 HOH HOH . F 4 HOH A 153 653 198 HOH HOH . F 4 HOH A 154 654 21 HOH HOH . F 4 HOH A 155 655 11 HOH HOH . F 4 HOH A 156 656 141 HOH HOH . F 4 HOH A 157 657 71 HOH HOH . F 4 HOH A 158 658 15 HOH HOH . F 4 HOH A 159 659 147 HOH HOH . F 4 HOH A 160 660 5 HOH HOH . F 4 HOH A 161 661 230 HOH HOH . F 4 HOH A 162 662 104 HOH HOH . F 4 HOH A 163 663 223 HOH HOH . F 4 HOH A 164 664 72 HOH HOH . F 4 HOH A 165 665 91 HOH HOH . F 4 HOH A 166 666 143 HOH HOH . F 4 HOH A 167 667 185 HOH HOH . F 4 HOH A 168 668 148 HOH HOH . F 4 HOH A 169 669 136 HOH HOH . F 4 HOH A 170 670 39 HOH HOH . F 4 HOH A 171 671 133 HOH HOH . F 4 HOH A 172 672 125 HOH HOH . F 4 HOH A 173 673 307 HOH HOH . F 4 HOH A 174 674 246 HOH HOH . F 4 HOH A 175 675 164 HOH HOH . F 4 HOH A 176 676 57 HOH HOH . F 4 HOH A 177 677 20 HOH HOH . F 4 HOH A 178 678 59 HOH HOH . F 4 HOH A 179 679 83 HOH HOH . F 4 HOH A 180 680 92 HOH HOH . F 4 HOH A 181 681 196 HOH HOH . F 4 HOH A 182 682 88 HOH HOH . F 4 HOH A 183 683 16 HOH HOH . F 4 HOH A 184 684 33 HOH HOH . F 4 HOH A 185 685 243 HOH HOH . F 4 HOH A 186 686 189 HOH HOH . F 4 HOH A 187 687 8 HOH HOH . F 4 HOH A 188 688 242 HOH HOH . F 4 HOH A 189 689 80 HOH HOH . F 4 HOH A 190 690 18 HOH HOH . F 4 HOH A 191 691 268 HOH HOH . F 4 HOH A 192 692 107 HOH HOH . F 4 HOH A 193 693 228 HOH HOH . F 4 HOH A 194 694 240 HOH HOH . F 4 HOH A 195 695 68 HOH HOH . F 4 HOH A 196 696 176 HOH HOH . F 4 HOH A 197 697 17 HOH HOH . F 4 HOH A 198 698 269 HOH HOH . F 4 HOH A 199 699 194 HOH HOH . F 4 HOH A 200 700 74 HOH HOH . F 4 HOH A 201 701 165 HOH HOH . F 4 HOH A 202 702 62 HOH HOH . F 4 HOH A 203 703 26 HOH HOH . F 4 HOH A 204 704 241 HOH HOH . F 4 HOH A 205 705 58 HOH HOH . F 4 HOH A 206 706 278 HOH HOH . F 4 HOH A 207 707 215 HOH HOH . F 4 HOH A 208 708 34 HOH HOH . F 4 HOH A 209 709 177 HOH HOH . F 4 HOH A 210 710 36 HOH HOH . F 4 HOH A 211 711 138 HOH HOH . F 4 HOH A 212 712 224 HOH HOH . F 4 HOH A 213 713 244 HOH HOH . F 4 HOH A 214 714 195 HOH HOH . F 4 HOH A 215 715 110 HOH HOH . F 4 HOH A 216 716 180 HOH HOH . F 4 HOH A 217 717 105 HOH HOH . F 4 HOH A 218 718 161 HOH HOH . F 4 HOH A 219 719 170 HOH HOH . F 4 HOH A 220 720 227 HOH HOH . F 4 HOH A 221 721 235 HOH HOH . F 4 HOH A 222 722 158 HOH HOH . F 4 HOH A 223 723 290 HOH HOH . F 4 HOH A 224 724 65 HOH HOH . F 4 HOH A 225 725 168 HOH HOH . F 4 HOH A 226 726 166 HOH HOH . F 4 HOH A 227 727 302 HOH HOH . F 4 HOH A 228 728 208 HOH HOH . F 4 HOH A 229 729 145 HOH HOH . F 4 HOH A 230 730 154 HOH HOH . F 4 HOH A 231 731 111 HOH HOH . F 4 HOH A 232 732 169 HOH HOH . F 4 HOH A 233 733 295 HOH HOH . F 4 HOH A 234 734 192 HOH HOH . F 4 HOH A 235 735 231 HOH HOH . F 4 HOH A 236 736 285 HOH HOH . F 4 HOH A 237 737 217 HOH HOH . F 4 HOH A 238 738 282 HOH HOH . F 4 HOH A 239 739 239 HOH HOH . F 4 HOH A 240 740 276 HOH HOH . F 4 HOH A 241 741 213 HOH HOH . F 4 HOH A 242 742 264 HOH HOH . F 4 HOH A 243 743 291 HOH HOH . F 4 HOH A 244 744 162 HOH HOH . F 4 HOH A 245 745 222 HOH HOH . F 4 HOH A 246 746 280 HOH HOH . F 4 HOH A 247 747 306 HOH HOH . F 4 HOH A 248 748 249 HOH HOH . F 4 HOH A 249 749 294 HOH HOH . F 4 HOH A 250 750 96 HOH HOH . F 4 HOH A 251 751 221 HOH HOH . F 4 HOH A 252 752 270 HOH HOH . F 4 HOH A 253 753 293 HOH HOH . F 4 HOH A 254 754 187 HOH HOH . F 4 HOH A 255 755 199 HOH HOH . F 4 HOH A 256 756 37 HOH HOH . F 4 HOH A 257 757 116 HOH HOH . F 4 HOH A 258 758 97 HOH HOH . F 4 HOH A 259 759 31 HOH HOH . F 4 HOH A 260 760 95 HOH HOH . F 4 HOH A 261 761 255 HOH HOH . F 4 HOH A 262 762 309 HOH HOH . F 4 HOH A 263 763 308 HOH HOH . F 4 HOH A 264 764 265 HOH HOH . F 4 HOH A 265 765 214 HOH HOH . F 4 HOH A 266 766 287 HOH HOH . F 4 HOH A 267 767 253 HOH HOH . F 4 HOH A 268 768 272 HOH HOH . F 4 HOH A 269 769 98 HOH HOH . F 4 HOH A 270 770 150 HOH HOH . F 4 HOH A 271 771 131 HOH HOH . F 4 HOH A 272 772 247 HOH HOH . F 4 HOH A 273 773 56 HOH HOH . F 4 HOH A 274 774 103 HOH HOH . F 4 HOH A 275 775 303 HOH HOH . F 4 HOH A 276 776 258 HOH HOH . F 4 HOH A 277 777 256 HOH HOH . F 4 HOH A 278 778 229 HOH HOH . F 4 HOH A 279 779 254 HOH HOH . F 4 HOH A 280 780 163 HOH HOH . F 4 HOH A 281 781 252 HOH HOH . F 4 HOH A 282 782 273 HOH HOH . F 4 HOH A 283 783 186 HOH HOH . F 4 HOH A 284 784 238 HOH HOH . F 4 HOH A 285 785 93 HOH HOH . F 4 HOH A 286 786 179 HOH HOH . F 4 HOH A 287 787 190 HOH HOH . F 4 HOH A 288 788 288 HOH HOH . F 4 HOH A 289 789 182 HOH HOH . F 4 HOH A 290 790 178 HOH HOH . F 4 HOH A 291 791 156 HOH HOH . F 4 HOH A 292 792 218 HOH HOH . F 4 HOH A 293 793 174 HOH HOH . F 4 HOH A 294 794 259 HOH HOH . F 4 HOH A 295 795 126 HOH HOH . F 4 HOH A 296 796 236 HOH HOH . F 4 HOH A 297 797 102 HOH HOH . F 4 HOH A 298 798 257 HOH HOH . F 4 HOH A 299 799 260 HOH HOH . F 4 HOH A 300 800 262 HOH HOH . F 4 HOH A 301 801 211 HOH HOH . F 4 HOH A 302 802 232 HOH HOH . F 4 HOH A 303 803 305 HOH HOH . F 4 HOH A 304 804 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 34.541 -21.738 2.957 1 64.76 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 35.923 -21.879 2.394 1 60.91 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 34.531 -22.354 4.658 1 62.17 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 34.146 -20.003 3.316 1 56.21 ? C2 DMS 403 A 1 HETATM 5 H H11 DMS . . . D 3 33.581 -22.177 5.092 1 74.6 ? H11 DMS 403 A 1 HETATM 6 H H12 DMS . . . D 3 35.275 -21.852 5.22 1 74.6 ? H12 DMS 403 A 1 HETATM 7 H H13 DMS . . . D 3 34.731 -23.394 4.658 1 74.6 ? H13 DMS 403 A 1 HETATM 8 H H21 DMS . . . D 3 34.887 -19.597 3.954 1 67.45 ? H21 DMS 403 A 1 HETATM 9 H H22 DMS . . . D 3 33.202 -19.947 3.791 1 67.45 ? H22 DMS 403 A 1 HETATM 10 H H23 DMS . . . D 3 34.119 -19.453 2.411 1 67.45 ? H23 DMS 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #