data_5JAX # _model_server_result.job_id ubebh-nXel_i-hKIKc5v9g _model_server_result.datetime_utc '2024-10-12 18:14:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5JAX # _exptl.entry_id 5JAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JAX _cell.length_a 47.01 _cell.length_b 47.01 _cell.length_c 102.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 55 A ASP 271 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc2 A O LYS 92 A LYS 308 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A O GLN 95 A GLN 311 1_555 E NA NA . A NA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 A O GLU 97 A GLU 313 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc5 A OD2 ASP 98 A ASP 314 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc6 A O GLY 126 A GLY 342 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 A OD1 ASP 128 A ASP 344 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc8 C CA CA . A CA 402 1_555 F O HOH . A HOH 516 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 C CA CA . A CA 402 1_555 F O HOH . A HOH 573 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc10 C CA CA . A CA 402 1_555 F O HOH . A HOH 606 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 E NA NA . A NA 404 1_555 F O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc12 E NA NA . A NA 404 1_555 F O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 E NA NA . A NA 404 1_555 F O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JAX _atom_sites.fract_transf_matrix[1][1] 0.021272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6J7 A 1 401 3 6J7 8br . C 3 CA A 1 402 2 CA CA . D 3 CA A 1 403 3 CA CA . E 4 NA A 1 404 1 NA NA . F 5 HOH A 1 501 107 HOH HOH . F 5 HOH A 2 502 127 HOH HOH . F 5 HOH A 3 503 18 HOH HOH . F 5 HOH A 4 504 82 HOH HOH . F 5 HOH A 5 505 17 HOH HOH . F 5 HOH A 6 506 13 HOH HOH . F 5 HOH A 7 507 120 HOH HOH . F 5 HOH A 8 508 116 HOH HOH . F 5 HOH A 9 509 59 HOH HOH . F 5 HOH A 10 510 66 HOH HOH . F 5 HOH A 11 511 63 HOH HOH . F 5 HOH A 12 512 85 HOH HOH . F 5 HOH A 13 513 40 HOH HOH . F 5 HOH A 14 514 101 HOH HOH . F 5 HOH A 15 515 46 HOH HOH . F 5 HOH A 16 516 20 HOH HOH . F 5 HOH A 17 517 53 HOH HOH . F 5 HOH A 18 518 29 HOH HOH . F 5 HOH A 19 519 31 HOH HOH . F 5 HOH A 20 520 112 HOH HOH . F 5 HOH A 21 521 3 HOH HOH . F 5 HOH A 22 522 5 HOH HOH . F 5 HOH A 23 523 15 HOH HOH . F 5 HOH A 24 524 80 HOH HOH . F 5 HOH A 25 525 60 HOH HOH . F 5 HOH A 26 526 42 HOH HOH . F 5 HOH A 27 527 12 HOH HOH . F 5 HOH A 28 528 4 HOH HOH . F 5 HOH A 29 529 32 HOH HOH . F 5 HOH A 30 530 44 HOH HOH . F 5 HOH A 31 531 83 HOH HOH . F 5 HOH A 32 532 45 HOH HOH . F 5 HOH A 33 533 97 HOH HOH . F 5 HOH A 34 534 36 HOH HOH . F 5 HOH A 35 535 95 HOH HOH . F 5 HOH A 36 536 114 HOH HOH . F 5 HOH A 37 537 2 HOH HOH . F 5 HOH A 38 538 56 HOH HOH . F 5 HOH A 39 539 48 HOH HOH . F 5 HOH A 40 540 98 HOH HOH . F 5 HOH A 41 541 10 HOH HOH . F 5 HOH A 42 542 1 HOH HOH . F 5 HOH A 43 543 122 HOH HOH . F 5 HOH A 44 544 27 HOH HOH . F 5 HOH A 45 545 11 HOH HOH . F 5 HOH A 46 546 14 HOH HOH . F 5 HOH A 47 547 100 HOH HOH . F 5 HOH A 48 548 89 HOH HOH . F 5 HOH A 49 549 99 HOH HOH . F 5 HOH A 50 550 7 HOH HOH . F 5 HOH A 51 551 43 HOH HOH . F 5 HOH A 52 552 81 HOH HOH . F 5 HOH A 53 553 34 HOH HOH . F 5 HOH A 54 554 65 HOH HOH . F 5 HOH A 55 555 76 HOH HOH . F 5 HOH A 56 556 38 HOH HOH . F 5 HOH A 57 557 22 HOH HOH . F 5 HOH A 58 558 54 HOH HOH . F 5 HOH A 59 559 110 HOH HOH . F 5 HOH A 60 560 91 HOH HOH . F 5 HOH A 61 561 8 HOH HOH . F 5 HOH A 62 562 19 HOH HOH . F 5 HOH A 63 563 104 HOH HOH . F 5 HOH A 64 564 41 HOH HOH . F 5 HOH A 65 565 49 HOH HOH . F 5 HOH A 66 566 103 HOH HOH . F 5 HOH A 67 567 51 HOH HOH . F 5 HOH A 68 568 74 HOH HOH . F 5 HOH A 69 569 88 HOH HOH . F 5 HOH A 70 570 47 HOH HOH . F 5 HOH A 71 571 39 HOH HOH . F 5 HOH A 72 572 70 HOH HOH . F 5 HOH A 73 573 35 HOH HOH . F 5 HOH A 74 574 26 HOH HOH . F 5 HOH A 75 575 9 HOH HOH . F 5 HOH A 76 576 79 HOH HOH . F 5 HOH A 77 577 75 HOH HOH . F 5 HOH A 78 578 62 HOH HOH . F 5 HOH A 79 579 52 HOH HOH . F 5 HOH A 80 580 23 HOH HOH . F 5 HOH A 81 581 50 HOH HOH . F 5 HOH A 82 582 55 HOH HOH . F 5 HOH A 83 583 102 HOH HOH . F 5 HOH A 84 584 124 HOH HOH . F 5 HOH A 85 585 119 HOH HOH . F 5 HOH A 86 586 6 HOH HOH . F 5 HOH A 87 587 61 HOH HOH . F 5 HOH A 88 588 16 HOH HOH . F 5 HOH A 89 589 77 HOH HOH . F 5 HOH A 90 590 126 HOH HOH . F 5 HOH A 91 591 24 HOH HOH . F 5 HOH A 92 592 123 HOH HOH . F 5 HOH A 93 593 21 HOH HOH . F 5 HOH A 94 594 64 HOH HOH . F 5 HOH A 95 595 28 HOH HOH . F 5 HOH A 96 596 113 HOH HOH . F 5 HOH A 97 597 37 HOH HOH . F 5 HOH A 98 598 69 HOH HOH . F 5 HOH A 99 599 78 HOH HOH . F 5 HOH A 100 600 125 HOH HOH . F 5 HOH A 101 601 30 HOH HOH . F 5 HOH A 102 602 108 HOH HOH . F 5 HOH A 103 603 68 HOH HOH . F 5 HOH A 104 604 92 HOH HOH . F 5 HOH A 105 605 58 HOH HOH . F 5 HOH A 106 606 118 HOH HOH . F 5 HOH A 107 607 106 HOH HOH . F 5 HOH A 108 608 72 HOH HOH . F 5 HOH A 109 609 109 HOH HOH . F 5 HOH A 110 610 73 HOH HOH . F 5 HOH A 111 611 84 HOH HOH . F 5 HOH A 112 612 111 HOH HOH . F 5 HOH A 113 613 71 HOH HOH . F 5 HOH A 114 614 87 HOH HOH . F 5 HOH A 115 615 86 HOH HOH . F 5 HOH A 116 616 115 HOH HOH . F 5 HOH A 117 617 96 HOH HOH . F 5 HOH A 118 618 57 HOH HOH . F 5 HOH A 119 619 121 HOH HOH . F 5 HOH A 120 620 90 HOH HOH . F 5 HOH A 121 621 94 HOH HOH . F 5 HOH A 122 622 25 HOH HOH . F 5 HOH A 123 623 67 HOH HOH . F 5 HOH A 124 624 33 HOH HOH . F 5 HOH A 125 625 105 HOH HOH . F 5 HOH A 126 626 93 HOH HOH . F 5 HOH A 127 627 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.523 _atom_site.Cartn_y 5.185 _atom_site.Cartn_z -24.205 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 85.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #