data_5JB8 # _model_server_result.job_id xn-4P6Zsit6nJux-gyxT6Q _model_server_result.datetime_utc '2024-11-19 16:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5JB8 # _exptl.entry_id 5JB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JB8 _cell.length_a 44.23 _cell.length_b 67.14 _cell.length_c 96.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 E CYS 88 1_555 A SG CYS 12 E CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 8 E CYS 95 1_555 A SG CYS 22 E CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 24 E CYS 111 1_555 A SG CYS 37 E CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 45 E CYS 132 1_555 B SG CYS 109 S CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf5 B SG CYS 26 S CYS 42 1_555 B SG CYS 42 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 156 S CYS 168 1_555 B SG CYS 170 S CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? disulf ? disulf7 B SG CYS 156 S CYS 168 1_555 B SG CYS 170 S CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 B SG CYS 181 S CYS 191 1_555 B SG CYS 209 S CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 B NE2 HIS 41 S HIS 57 1_555 D C3 0GJ . S 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B OG SER 185 S SER 195 1_555 D C2 0GJ . S 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? metalc ? metalc1 B OE1 GLU 55 S GLU 70 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 B O ASN 57 S ASN 72 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 B O GLU 60 S GLU 75 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 B OE1 GLU 62 S GLU 77 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 B OE2 GLU 62 S GLU 77 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 B OE2 GLU 65 S GLU 80 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 C CA CA . S CA 301 1_555 G O HOH . S HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JB8 _atom_sites.fract_transf_matrix[1][1] 0.022609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA S 1 301 246 CA CA . D 4 0GJ S 1 302 1 0GJ 0GJ . E 5 DMS S 1 303 2 DMS DMS . F 6 HOH E 1 201 1233 HOH HOH . F 6 HOH E 2 202 1224 HOH HOH . F 6 HOH E 3 203 1132 HOH HOH . F 6 HOH E 4 204 1216 HOH HOH . F 6 HOH E 5 205 1258 HOH HOH . F 6 HOH E 6 206 1165 HOH HOH . F 6 HOH E 7 207 1059 HOH HOH . F 6 HOH E 8 208 1099 HOH HOH . F 6 HOH E 9 209 1032 HOH HOH . F 6 HOH E 10 210 1128 HOH HOH . F 6 HOH E 11 211 1122 HOH HOH . F 6 HOH E 12 212 1141 HOH HOH . F 6 HOH E 13 213 1005 HOH HOH . F 6 HOH E 14 214 1029 HOH HOH . F 6 HOH E 15 215 1159 HOH HOH . F 6 HOH E 16 216 1228 HOH HOH . F 6 HOH E 17 217 1046 HOH HOH . F 6 HOH E 18 218 1069 HOH HOH . F 6 HOH E 19 219 1108 HOH HOH . F 6 HOH E 20 220 1044 HOH HOH . F 6 HOH E 21 221 1100 HOH HOH . F 6 HOH E 22 222 1273 HOH HOH . F 6 HOH E 23 223 1083 HOH HOH . F 6 HOH E 24 224 1259 HOH HOH . F 6 HOH E 25 225 1105 HOH HOH . F 6 HOH E 26 226 1118 HOH HOH . F 6 HOH E 27 227 1125 HOH HOH . F 6 HOH E 28 228 1236 HOH HOH . F 6 HOH E 29 229 1277 HOH HOH . F 6 HOH E 30 230 1202 HOH HOH . F 6 HOH E 31 231 1213 HOH HOH . F 6 HOH E 32 232 1185 HOH HOH . F 6 HOH E 33 233 1203 HOH HOH . F 6 HOH E 34 234 1237 HOH HOH . G 6 HOH S 1 401 1282 HOH HOH . G 6 HOH S 2 402 1287 HOH HOH . G 6 HOH S 3 403 1176 HOH HOH . G 6 HOH S 4 404 1242 HOH HOH . G 6 HOH S 5 405 1126 HOH HOH . G 6 HOH S 6 406 1112 HOH HOH . G 6 HOH S 7 407 1280 HOH HOH . G 6 HOH S 8 408 1201 HOH HOH . G 6 HOH S 9 409 1157 HOH HOH . G 6 HOH S 10 410 1231 HOH HOH . G 6 HOH S 11 411 1217 HOH HOH . G 6 HOH S 12 412 1041 HOH HOH . G 6 HOH S 13 413 1151 HOH HOH . G 6 HOH S 14 414 1067 HOH HOH . G 6 HOH S 15 415 1152 HOH HOH . G 6 HOH S 16 416 1030 HOH HOH . G 6 HOH S 17 417 1107 HOH HOH . G 6 HOH S 18 418 1158 HOH HOH . G 6 HOH S 19 419 1007 HOH HOH . G 6 HOH S 20 420 1123 HOH HOH . G 6 HOH S 21 421 1015 HOH HOH . G 6 HOH S 22 422 1035 HOH HOH . G 6 HOH S 23 423 1109 HOH HOH . G 6 HOH S 24 424 1087 HOH HOH . G 6 HOH S 25 425 1071 HOH HOH . G 6 HOH S 26 426 1062 HOH HOH . G 6 HOH S 27 427 1037 HOH HOH . G 6 HOH S 28 428 1143 HOH HOH . G 6 HOH S 29 429 1025 HOH HOH . G 6 HOH S 30 430 1268 HOH HOH . G 6 HOH S 31 431 1091 HOH HOH . G 6 HOH S 32 432 1196 HOH HOH . G 6 HOH S 33 433 1057 HOH HOH . G 6 HOH S 34 434 1260 HOH HOH . G 6 HOH S 35 435 1172 HOH HOH . G 6 HOH S 36 436 1244 HOH HOH . G 6 HOH S 37 437 1180 HOH HOH . G 6 HOH S 38 438 1101 HOH HOH . G 6 HOH S 39 439 1167 HOH HOH . G 6 HOH S 40 440 1012 HOH HOH . G 6 HOH S 41 441 1068 HOH HOH . G 6 HOH S 42 442 1008 HOH HOH . G 6 HOH S 43 443 1130 HOH HOH . G 6 HOH S 44 444 1144 HOH HOH . G 6 HOH S 45 445 1052 HOH HOH . G 6 HOH S 46 446 1004 HOH HOH . G 6 HOH S 47 447 1119 HOH HOH . G 6 HOH S 48 448 1001 HOH HOH . G 6 HOH S 49 449 1113 HOH HOH . G 6 HOH S 50 450 1124 HOH HOH . G 6 HOH S 51 451 1003 HOH HOH . G 6 HOH S 52 452 1246 HOH HOH . G 6 HOH S 53 453 1208 HOH HOH . G 6 HOH S 54 454 1006 HOH HOH . G 6 HOH S 55 455 1048 HOH HOH . G 6 HOH S 56 456 1133 HOH HOH . G 6 HOH S 57 457 1135 HOH HOH . G 6 HOH S 58 458 1111 HOH HOH . G 6 HOH S 59 459 1138 HOH HOH . G 6 HOH S 60 460 1036 HOH HOH . G 6 HOH S 61 461 1281 HOH HOH . G 6 HOH S 62 462 1223 HOH HOH . G 6 HOH S 63 463 1200 HOH HOH . G 6 HOH S 64 464 1254 HOH HOH . G 6 HOH S 65 465 1095 HOH HOH . G 6 HOH S 66 466 1205 HOH HOH . G 6 HOH S 67 467 1136 HOH HOH . G 6 HOH S 68 468 1077 HOH HOH . G 6 HOH S 69 469 1187 HOH HOH . G 6 HOH S 70 470 1120 HOH HOH . G 6 HOH S 71 471 1047 HOH HOH . G 6 HOH S 72 472 1103 HOH HOH . G 6 HOH S 73 473 1153 HOH HOH . G 6 HOH S 74 474 1173 HOH HOH . G 6 HOH S 75 475 1074 HOH HOH . G 6 HOH S 76 476 1017 HOH HOH . G 6 HOH S 77 477 1065 HOH HOH . G 6 HOH S 78 478 1045 HOH HOH . G 6 HOH S 79 479 1084 HOH HOH . G 6 HOH S 80 480 1149 HOH HOH . G 6 HOH S 81 481 1155 HOH HOH . G 6 HOH S 82 482 1171 HOH HOH . G 6 HOH S 83 483 1011 HOH HOH . G 6 HOH S 84 484 1154 HOH HOH . G 6 HOH S 85 485 1038 HOH HOH . G 6 HOH S 86 486 1022 HOH HOH . G 6 HOH S 87 487 1150 HOH HOH . G 6 HOH S 88 488 1061 HOH HOH . G 6 HOH S 89 489 1026 HOH HOH . G 6 HOH S 90 490 1250 HOH HOH . G 6 HOH S 91 491 1248 HOH HOH . G 6 HOH S 92 492 1021 HOH HOH . G 6 HOH S 93 493 1286 HOH HOH . G 6 HOH S 94 494 1002 HOH HOH . G 6 HOH S 95 495 1081 HOH HOH . G 6 HOH S 96 496 1054 HOH HOH . G 6 HOH S 97 497 1127 HOH HOH . G 6 HOH S 98 498 1131 HOH HOH . G 6 HOH S 99 499 1018 HOH HOH . G 6 HOH S 100 500 1043 HOH HOH . G 6 HOH S 101 501 1255 HOH HOH . G 6 HOH S 102 502 1170 HOH HOH . G 6 HOH S 103 503 1227 HOH HOH . G 6 HOH S 104 504 1024 HOH HOH . G 6 HOH S 105 505 1070 HOH HOH . G 6 HOH S 106 506 1014 HOH HOH . G 6 HOH S 107 507 1221 HOH HOH . G 6 HOH S 108 508 1075 HOH HOH . G 6 HOH S 109 509 1140 HOH HOH . G 6 HOH S 110 510 1142 HOH HOH . G 6 HOH S 111 511 1129 HOH HOH . G 6 HOH S 112 512 1028 HOH HOH . G 6 HOH S 113 513 1020 HOH HOH . G 6 HOH S 114 514 1148 HOH HOH . G 6 HOH S 115 515 1161 HOH HOH . G 6 HOH S 116 516 1010 HOH HOH . G 6 HOH S 117 517 1039 HOH HOH . G 6 HOH S 118 518 1019 HOH HOH . G 6 HOH S 119 519 1106 HOH HOH . G 6 HOH S 120 520 1082 HOH HOH . G 6 HOH S 121 521 1146 HOH HOH . G 6 HOH S 122 522 1110 HOH HOH . G 6 HOH S 123 523 1063 HOH HOH . G 6 HOH S 124 524 1092 HOH HOH . G 6 HOH S 125 525 1197 HOH HOH . G 6 HOH S 126 526 1096 HOH HOH . G 6 HOH S 127 527 1013 HOH HOH . G 6 HOH S 128 528 1033 HOH HOH . G 6 HOH S 129 529 1009 HOH HOH . G 6 HOH S 130 530 1256 HOH HOH . G 6 HOH S 131 531 1066 HOH HOH . G 6 HOH S 132 532 1137 HOH HOH . G 6 HOH S 133 533 1229 HOH HOH . G 6 HOH S 134 534 1284 HOH HOH . G 6 HOH S 135 535 1058 HOH HOH . G 6 HOH S 136 536 1086 HOH HOH . G 6 HOH S 137 537 1243 HOH HOH . G 6 HOH S 138 538 1147 HOH HOH . G 6 HOH S 139 539 1056 HOH HOH . G 6 HOH S 140 540 1270 HOH HOH . G 6 HOH S 141 541 1060 HOH HOH . G 6 HOH S 142 542 1166 HOH HOH . G 6 HOH S 143 543 1080 HOH HOH . G 6 HOH S 144 544 1031 HOH HOH . G 6 HOH S 145 545 1098 HOH HOH . G 6 HOH S 146 546 1164 HOH HOH . G 6 HOH S 147 547 1276 HOH HOH . G 6 HOH S 148 548 1049 HOH HOH . G 6 HOH S 149 549 1040 HOH HOH . G 6 HOH S 150 550 1073 HOH HOH . G 6 HOH S 151 551 1235 HOH HOH . G 6 HOH S 152 552 1016 HOH HOH . G 6 HOH S 153 553 1121 HOH HOH . G 6 HOH S 154 554 1053 HOH HOH . G 6 HOH S 155 555 1115 HOH HOH . G 6 HOH S 156 556 1245 HOH HOH . G 6 HOH S 157 557 1261 HOH HOH . G 6 HOH S 158 558 1090 HOH HOH . G 6 HOH S 159 559 1023 HOH HOH . G 6 HOH S 160 560 1134 HOH HOH . G 6 HOH S 161 561 1050 HOH HOH . G 6 HOH S 162 562 1089 HOH HOH . G 6 HOH S 163 563 1219 HOH HOH . G 6 HOH S 164 564 1214 HOH HOH . G 6 HOH S 165 565 1145 HOH HOH . G 6 HOH S 166 566 1232 HOH HOH . G 6 HOH S 167 567 1027 HOH HOH . G 6 HOH S 168 568 1088 HOH HOH . G 6 HOH S 169 569 1072 HOH HOH . G 6 HOH S 170 570 1079 HOH HOH . G 6 HOH S 171 571 1290 HOH HOH . G 6 HOH S 172 572 1116 HOH HOH . G 6 HOH S 173 573 1168 HOH HOH . G 6 HOH S 174 574 1174 HOH HOH . G 6 HOH S 175 575 1156 HOH HOH . G 6 HOH S 176 576 1055 HOH HOH . G 6 HOH S 177 577 1102 HOH HOH . G 6 HOH S 178 578 1094 HOH HOH . G 6 HOH S 179 579 1218 HOH HOH . G 6 HOH S 180 580 1252 HOH HOH . G 6 HOH S 181 581 1209 HOH HOH . G 6 HOH S 182 582 1195 HOH HOH . G 6 HOH S 183 583 1279 HOH HOH . G 6 HOH S 184 584 1289 HOH HOH . G 6 HOH S 185 585 1267 HOH HOH . G 6 HOH S 186 586 1265 HOH HOH . G 6 HOH S 187 587 1204 HOH HOH . G 6 HOH S 188 588 1212 HOH HOH . G 6 HOH S 189 589 1266 HOH HOH . G 6 HOH S 190 590 1192 HOH HOH . G 6 HOH S 191 591 1283 HOH HOH . G 6 HOH S 192 592 1139 HOH HOH . G 6 HOH S 193 593 1199 HOH HOH . G 6 HOH S 194 594 1190 HOH HOH . G 6 HOH S 195 595 1178 HOH HOH . G 6 HOH S 196 596 1184 HOH HOH . G 6 HOH S 197 597 1085 HOH HOH . G 6 HOH S 198 598 1253 HOH HOH . G 6 HOH S 199 599 1251 HOH HOH . G 6 HOH S 200 600 1210 HOH HOH . G 6 HOH S 201 601 1262 HOH HOH . G 6 HOH S 202 602 1183 HOH HOH . G 6 HOH S 203 603 1234 HOH HOH . G 6 HOH S 204 604 1051 HOH HOH . G 6 HOH S 205 605 1222 HOH HOH . G 6 HOH S 206 606 1207 HOH HOH . G 6 HOH S 207 607 1220 HOH HOH . G 6 HOH S 208 608 1247 HOH HOH . G 6 HOH S 209 609 1198 HOH HOH . G 6 HOH S 210 610 1034 HOH HOH . G 6 HOH S 211 611 1226 HOH HOH . G 6 HOH S 212 612 1271 HOH HOH . G 6 HOH S 213 613 1191 HOH HOH . G 6 HOH S 214 614 1064 HOH HOH . G 6 HOH S 215 615 1186 HOH HOH . G 6 HOH S 216 616 1076 HOH HOH . G 6 HOH S 217 617 1240 HOH HOH . G 6 HOH S 218 618 1211 HOH HOH . G 6 HOH S 219 619 1169 HOH HOH . G 6 HOH S 220 620 1206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -26.829 _atom_site.Cartn_y -12.105 _atom_site.Cartn_z 13.305 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id S _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #