data_5JBT # _model_server_result.job_id QCIN9MTiecHRr5B7V4Th3w _model_server_result.datetime_utc '2024-11-05 01:28:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5JBT # _exptl.entry_id 5JBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JBT _cell.length_a 98.956 _cell.length_b 54.539 _cell.length_c 56.632 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf3 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf5 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf6 B SG CYS 4 X CYS 5 1_555 C SG CYS 38 Y CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf7 B SG CYS 13 X CYS 14 1_555 C SG CYS 21 Y CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf8 C SG CYS 13 Y CYS 30 1_555 C SG CYS 34 Y CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 D CA CA . A CA 301 1_555 F O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JBT _atom_sites.fract_transf_matrix[1][1] 0.010106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 301 1 CA CA . E 5 SO4 Y 1 101 1 SO4 SO4 . F 6 HOH A 1 401 206 HOH HOH . F 6 HOH A 2 402 165 HOH HOH . F 6 HOH A 3 403 107 HOH HOH . F 6 HOH A 4 404 250 HOH HOH . F 6 HOH A 5 405 130 HOH HOH . F 6 HOH A 6 406 233 HOH HOH . F 6 HOH A 7 407 81 HOH HOH . F 6 HOH A 8 408 246 HOH HOH . F 6 HOH A 9 409 283 HOH HOH . F 6 HOH A 10 410 111 HOH HOH . F 6 HOH A 11 411 145 HOH HOH . F 6 HOH A 12 412 3 HOH HOH . F 6 HOH A 13 413 189 HOH HOH . F 6 HOH A 14 414 288 HOH HOH . F 6 HOH A 15 415 124 HOH HOH . F 6 HOH A 16 416 35 HOH HOH . F 6 HOH A 17 417 12 HOH HOH . F 6 HOH A 18 418 180 HOH HOH . F 6 HOH A 19 419 99 HOH HOH . F 6 HOH A 20 420 284 HOH HOH . F 6 HOH A 21 421 74 HOH HOH . F 6 HOH A 22 422 264 HOH HOH . F 6 HOH A 23 423 53 HOH HOH . F 6 HOH A 24 424 140 HOH HOH . F 6 HOH A 25 425 76 HOH HOH . F 6 HOH A 26 426 163 HOH HOH . F 6 HOH A 27 427 44 HOH HOH . F 6 HOH A 28 428 22 HOH HOH . F 6 HOH A 29 429 260 HOH HOH . F 6 HOH A 30 430 105 HOH HOH . F 6 HOH A 31 431 69 HOH HOH . F 6 HOH A 32 432 112 HOH HOH . F 6 HOH A 33 433 60 HOH HOH . F 6 HOH A 34 434 120 HOH HOH . F 6 HOH A 35 435 28 HOH HOH . F 6 HOH A 36 436 197 HOH HOH . F 6 HOH A 37 437 19 HOH HOH . F 6 HOH A 38 438 146 HOH HOH . F 6 HOH A 39 439 92 HOH HOH . F 6 HOH A 40 440 184 HOH HOH . F 6 HOH A 41 441 70 HOH HOH . F 6 HOH A 42 442 144 HOH HOH . F 6 HOH A 43 443 178 HOH HOH . F 6 HOH A 44 444 188 HOH HOH . F 6 HOH A 45 445 41 HOH HOH . F 6 HOH A 46 446 71 HOH HOH . F 6 HOH A 47 447 84 HOH HOH . F 6 HOH A 48 448 39 HOH HOH . F 6 HOH A 49 449 14 HOH HOH . F 6 HOH A 50 450 204 HOH HOH . F 6 HOH A 51 451 1 HOH HOH . F 6 HOH A 52 452 87 HOH HOH . F 6 HOH A 53 453 100 HOH HOH . F 6 HOH A 54 454 86 HOH HOH . F 6 HOH A 55 455 174 HOH HOH . F 6 HOH A 56 456 38 HOH HOH . F 6 HOH A 57 457 9 HOH HOH . F 6 HOH A 58 458 64 HOH HOH . F 6 HOH A 59 459 142 HOH HOH . F 6 HOH A 60 460 154 HOH HOH . F 6 HOH A 61 461 282 HOH HOH . F 6 HOH A 62 462 136 HOH HOH . F 6 HOH A 63 463 43 HOH HOH . F 6 HOH A 64 464 66 HOH HOH . F 6 HOH A 65 465 168 HOH HOH . F 6 HOH A 66 466 116 HOH HOH . F 6 HOH A 67 467 23 HOH HOH . F 6 HOH A 68 468 113 HOH HOH . F 6 HOH A 69 469 8 HOH HOH . F 6 HOH A 70 470 50 HOH HOH . F 6 HOH A 71 471 95 HOH HOH . F 6 HOH A 72 472 42 HOH HOH . F 6 HOH A 73 473 52 HOH HOH . F 6 HOH A 74 474 18 HOH HOH . F 6 HOH A 75 475 78 HOH HOH . F 6 HOH A 76 476 7 HOH HOH . F 6 HOH A 77 477 103 HOH HOH . F 6 HOH A 78 478 125 HOH HOH . F 6 HOH A 79 479 25 HOH HOH . F 6 HOH A 80 480 51 HOH HOH . F 6 HOH A 81 481 83 HOH HOH . F 6 HOH A 82 482 21 HOH HOH . F 6 HOH A 83 483 11 HOH HOH . F 6 HOH A 84 484 176 HOH HOH . F 6 HOH A 85 485 29 HOH HOH . F 6 HOH A 86 486 4 HOH HOH . F 6 HOH A 87 487 77 HOH HOH . F 6 HOH A 88 488 6 HOH HOH . F 6 HOH A 89 489 67 HOH HOH . F 6 HOH A 90 490 36 HOH HOH . F 6 HOH A 91 491 278 HOH HOH . F 6 HOH A 92 492 20 HOH HOH . F 6 HOH A 93 493 201 HOH HOH . F 6 HOH A 94 494 96 HOH HOH . F 6 HOH A 95 495 187 HOH HOH . F 6 HOH A 96 496 24 HOH HOH . F 6 HOH A 97 497 94 HOH HOH . F 6 HOH A 98 498 128 HOH HOH . F 6 HOH A 99 499 62 HOH HOH . F 6 HOH A 100 500 196 HOH HOH . F 6 HOH A 101 501 31 HOH HOH . F 6 HOH A 102 502 40 HOH HOH . F 6 HOH A 103 503 13 HOH HOH . F 6 HOH A 104 504 236 HOH HOH . F 6 HOH A 105 505 10 HOH HOH . F 6 HOH A 106 506 143 HOH HOH . F 6 HOH A 107 507 54 HOH HOH . F 6 HOH A 108 508 139 HOH HOH . F 6 HOH A 109 509 209 HOH HOH . F 6 HOH A 110 510 108 HOH HOH . F 6 HOH A 111 511 192 HOH HOH . F 6 HOH A 112 512 170 HOH HOH . F 6 HOH A 113 513 16 HOH HOH . F 6 HOH A 114 514 117 HOH HOH . F 6 HOH A 115 515 90 HOH HOH . F 6 HOH A 116 516 68 HOH HOH . F 6 HOH A 117 517 127 HOH HOH . F 6 HOH A 118 518 242 HOH HOH . F 6 HOH A 119 519 123 HOH HOH . F 6 HOH A 120 520 48 HOH HOH . F 6 HOH A 121 521 185 HOH HOH . F 6 HOH A 122 522 98 HOH HOH . F 6 HOH A 123 523 45 HOH HOH . F 6 HOH A 124 524 267 HOH HOH . F 6 HOH A 125 525 79 HOH HOH . F 6 HOH A 126 526 177 HOH HOH . F 6 HOH A 127 527 2 HOH HOH . F 6 HOH A 128 528 276 HOH HOH . F 6 HOH A 129 529 166 HOH HOH . F 6 HOH A 130 530 179 HOH HOH . F 6 HOH A 131 531 33 HOH HOH . F 6 HOH A 132 532 26 HOH HOH . F 6 HOH A 133 533 182 HOH HOH . F 6 HOH A 134 534 101 HOH HOH . F 6 HOH A 135 535 58 HOH HOH . F 6 HOH A 136 536 190 HOH HOH . F 6 HOH A 137 537 152 HOH HOH . F 6 HOH A 138 538 210 HOH HOH . F 6 HOH A 139 539 80 HOH HOH . F 6 HOH A 140 540 30 HOH HOH . F 6 HOH A 141 541 280 HOH HOH . F 6 HOH A 142 542 73 HOH HOH . F 6 HOH A 143 543 207 HOH HOH . F 6 HOH A 144 544 49 HOH HOH . F 6 HOH A 145 545 175 HOH HOH . F 6 HOH A 146 546 57 HOH HOH . F 6 HOH A 147 547 119 HOH HOH . F 6 HOH A 148 548 208 HOH HOH . F 6 HOH A 149 549 115 HOH HOH . F 6 HOH A 150 550 135 HOH HOH . F 6 HOH A 151 551 214 HOH HOH . F 6 HOH A 152 552 272 HOH HOH . F 6 HOH A 153 553 198 HOH HOH . F 6 HOH A 154 554 150 HOH HOH . F 6 HOH A 155 555 122 HOH HOH . F 6 HOH A 156 556 32 HOH HOH . F 6 HOH A 157 557 186 HOH HOH . F 6 HOH A 158 558 65 HOH HOH . F 6 HOH A 159 559 258 HOH HOH . F 6 HOH A 160 560 5 HOH HOH . F 6 HOH A 161 561 181 HOH HOH . F 6 HOH A 162 562 137 HOH HOH . F 6 HOH A 163 563 89 HOH HOH . F 6 HOH A 164 564 191 HOH HOH . F 6 HOH A 165 565 27 HOH HOH . F 6 HOH A 166 566 59 HOH HOH . F 6 HOH A 167 567 34 HOH HOH . F 6 HOH A 168 568 279 HOH HOH . F 6 HOH A 169 569 243 HOH HOH . F 6 HOH A 170 570 91 HOH HOH . F 6 HOH A 171 571 291 HOH HOH . F 6 HOH A 172 572 56 HOH HOH . F 6 HOH A 173 573 277 HOH HOH . F 6 HOH A 174 574 148 HOH HOH . F 6 HOH A 175 575 216 HOH HOH . F 6 HOH A 176 576 213 HOH HOH . F 6 HOH A 177 577 118 HOH HOH . F 6 HOH A 178 578 217 HOH HOH . F 6 HOH A 179 579 256 HOH HOH . F 6 HOH A 180 580 220 HOH HOH . F 6 HOH A 181 581 153 HOH HOH . F 6 HOH A 182 582 159 HOH HOH . F 6 HOH A 183 583 93 HOH HOH . F 6 HOH A 184 584 222 HOH HOH . F 6 HOH A 185 585 158 HOH HOH . F 6 HOH A 186 586 155 HOH HOH . F 6 HOH A 187 587 225 HOH HOH . F 6 HOH A 188 588 162 HOH HOH . F 6 HOH A 189 589 221 HOH HOH . F 6 HOH A 190 590 240 HOH HOH . F 6 HOH A 191 591 292 HOH HOH . F 6 HOH A 192 592 231 HOH HOH . F 6 HOH A 193 593 131 HOH HOH . F 6 HOH A 194 594 88 HOH HOH . F 6 HOH A 195 595 223 HOH HOH . F 6 HOH A 196 596 265 HOH HOH . F 6 HOH A 197 597 268 HOH HOH . F 6 HOH A 198 598 227 HOH HOH . F 6 HOH A 199 599 269 HOH HOH . F 6 HOH A 200 600 248 HOH HOH . F 6 HOH A 201 601 287 HOH HOH . F 6 HOH A 202 602 114 HOH HOH . F 6 HOH A 203 603 218 HOH HOH . F 6 HOH A 204 604 156 HOH HOH . F 6 HOH A 205 605 245 HOH HOH . F 6 HOH A 206 606 285 HOH HOH . F 6 HOH A 207 607 289 HOH HOH . F 6 HOH A 208 608 261 HOH HOH . F 6 HOH A 209 609 147 HOH HOH . F 6 HOH A 210 610 230 HOH HOH . F 6 HOH A 211 611 104 HOH HOH . F 6 HOH A 212 612 161 HOH HOH . F 6 HOH A 213 613 290 HOH HOH . F 6 HOH A 214 614 251 HOH HOH . F 6 HOH A 215 615 183 HOH HOH . F 6 HOH A 216 616 226 HOH HOH . F 6 HOH A 217 617 254 HOH HOH . F 6 HOH A 218 618 266 HOH HOH . F 6 HOH A 219 619 219 HOH HOH . F 6 HOH A 220 620 263 HOH HOH . F 6 HOH A 221 621 252 HOH HOH . F 6 HOH A 222 622 63 HOH HOH . F 6 HOH A 223 623 55 HOH HOH . G 6 HOH X 1 101 167 HOH HOH . G 6 HOH X 2 102 106 HOH HOH . G 6 HOH X 3 103 75 HOH HOH . G 6 HOH X 4 104 72 HOH HOH . G 6 HOH X 5 105 151 HOH HOH . G 6 HOH X 6 106 129 HOH HOH . G 6 HOH X 7 107 82 HOH HOH . G 6 HOH X 8 108 149 HOH HOH . G 6 HOH X 9 109 37 HOH HOH . G 6 HOH X 10 110 200 HOH HOH . G 6 HOH X 11 111 169 HOH HOH . G 6 HOH X 12 112 160 HOH HOH . G 6 HOH X 13 113 164 HOH HOH . G 6 HOH X 14 114 132 HOH HOH . H 6 HOH Y 1 201 61 HOH HOH . H 6 HOH Y 2 202 273 HOH HOH . H 6 HOH Y 3 203 229 HOH HOH . H 6 HOH Y 4 204 97 HOH HOH . H 6 HOH Y 5 205 173 HOH HOH . H 6 HOH Y 6 206 85 HOH HOH . H 6 HOH Y 7 207 195 HOH HOH . H 6 HOH Y 8 208 126 HOH HOH . H 6 HOH Y 9 209 110 HOH HOH . H 6 HOH Y 10 210 286 HOH HOH . H 6 HOH Y 11 211 138 HOH HOH . H 6 HOH Y 12 212 202 HOH HOH . H 6 HOH Y 13 213 134 HOH HOH . H 6 HOH Y 14 214 46 HOH HOH . H 6 HOH Y 15 215 232 HOH HOH . H 6 HOH Y 16 216 241 HOH HOH . H 6 HOH Y 17 217 239 HOH HOH . H 6 HOH Y 18 218 293 HOH HOH . H 6 HOH Y 19 219 271 HOH HOH . H 6 HOH Y 20 220 102 HOH HOH . H 6 HOH Y 21 221 121 HOH HOH . H 6 HOH Y 22 222 253 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.214 _atom_site.Cartn_y 58.652 _atom_site.Cartn_z -2.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #