data_5JD8 # _model_server_result.job_id La-Rz9YB0pSnK1GKW9m7gg _model_server_result.datetime_utc '2024-11-05 00:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5JD8 # _exptl.entry_id 5JD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JD8 _cell.length_a 104.418 _cell.length_b 104.418 _cell.length_c 76.015 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.209 90.428641 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.209 90.428641 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 257 n n C1 C2 PEG sing 258 n n C1 H11 PEG sing 259 n n C1 H12 PEG sing 260 n n O1 HO1 PEG sing 261 n n C2 O2 PEG sing 262 n n C2 H21 PEG sing 263 n n C2 H22 PEG sing 264 n n O2 C3 PEG sing 265 n n C3 C4 PEG sing 266 n n C3 H31 PEG sing 267 n n C3 H32 PEG sing 268 n n C4 O4 PEG sing 269 n n C4 H41 PEG sing 270 n n C4 H42 PEG sing 271 n n O4 HO4 PEG sing 272 n n # _atom_sites.entry_id 5JD8 _atom_sites.fract_transf_matrix[1][1] 0.009577 _atom_sites.fract_transf_matrix[1][2] 0.005529 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CXS A 1 401 1 CXS CXS . C 3 PEG A 1 402 1 PEG PEG . D 4 SO4 A 1 403 1 SO4 SO4 . E 5 HOH A 1 501 192 HOH HOH . E 5 HOH A 2 502 55 HOH HOH . E 5 HOH A 3 503 62 HOH HOH . E 5 HOH A 4 504 116 HOH HOH . E 5 HOH A 5 505 51 HOH HOH . E 5 HOH A 6 506 48 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 49 HOH HOH . E 5 HOH A 9 509 37 HOH HOH . E 5 HOH A 10 510 43 HOH HOH . E 5 HOH A 11 511 12 HOH HOH . E 5 HOH A 12 512 27 HOH HOH . E 5 HOH A 13 513 19 HOH HOH . E 5 HOH A 14 514 67 HOH HOH . E 5 HOH A 15 515 1 HOH HOH . E 5 HOH A 16 516 45 HOH HOH . E 5 HOH A 17 517 83 HOH HOH . E 5 HOH A 18 518 63 HOH HOH . E 5 HOH A 19 519 13 HOH HOH . E 5 HOH A 20 520 3 HOH HOH . E 5 HOH A 21 521 223 HOH HOH . E 5 HOH A 22 522 220 HOH HOH . E 5 HOH A 23 523 15 HOH HOH . E 5 HOH A 24 524 107 HOH HOH . E 5 HOH A 25 525 44 HOH HOH . E 5 HOH A 26 526 40 HOH HOH . E 5 HOH A 27 527 26 HOH HOH . E 5 HOH A 28 528 35 HOH HOH . E 5 HOH A 29 529 11 HOH HOH . E 5 HOH A 30 530 66 HOH HOH . E 5 HOH A 31 531 6 HOH HOH . E 5 HOH A 32 532 91 HOH HOH . E 5 HOH A 33 533 56 HOH HOH . E 5 HOH A 34 534 16 HOH HOH . E 5 HOH A 35 535 9 HOH HOH . E 5 HOH A 36 536 221 HOH HOH . E 5 HOH A 37 537 2 HOH HOH . E 5 HOH A 38 538 71 HOH HOH . E 5 HOH A 39 539 69 HOH HOH . E 5 HOH A 40 540 86 HOH HOH . E 5 HOH A 41 541 74 HOH HOH . E 5 HOH A 42 542 47 HOH HOH . E 5 HOH A 43 543 170 HOH HOH . E 5 HOH A 44 544 25 HOH HOH . E 5 HOH A 45 545 17 HOH HOH . E 5 HOH A 46 546 21 HOH HOH . E 5 HOH A 47 547 18 HOH HOH . E 5 HOH A 48 548 171 HOH HOH . E 5 HOH A 49 549 78 HOH HOH . E 5 HOH A 50 550 214 HOH HOH . E 5 HOH A 51 551 90 HOH HOH . E 5 HOH A 52 552 133 HOH HOH . E 5 HOH A 53 553 186 HOH HOH . E 5 HOH A 54 554 36 HOH HOH . E 5 HOH A 55 555 57 HOH HOH . E 5 HOH A 56 556 68 HOH HOH . E 5 HOH A 57 557 29 HOH HOH . E 5 HOH A 58 558 32 HOH HOH . E 5 HOH A 59 559 53 HOH HOH . E 5 HOH A 60 560 8 HOH HOH . E 5 HOH A 61 561 14 HOH HOH . E 5 HOH A 62 562 82 HOH HOH . E 5 HOH A 63 563 50 HOH HOH . E 5 HOH A 64 564 213 HOH HOH . E 5 HOH A 65 565 81 HOH HOH . E 5 HOH A 66 566 194 HOH HOH . E 5 HOH A 67 567 110 HOH HOH . E 5 HOH A 68 568 125 HOH HOH . E 5 HOH A 69 569 72 HOH HOH . E 5 HOH A 70 570 85 HOH HOH . E 5 HOH A 71 571 4 HOH HOH . E 5 HOH A 72 572 24 HOH HOH . E 5 HOH A 73 573 31 HOH HOH . E 5 HOH A 74 574 212 HOH HOH . E 5 HOH A 75 575 34 HOH HOH . E 5 HOH A 76 576 202 HOH HOH . E 5 HOH A 77 577 164 HOH HOH . E 5 HOH A 78 578 119 HOH HOH . E 5 HOH A 79 579 102 HOH HOH . E 5 HOH A 80 580 94 HOH HOH . E 5 HOH A 81 581 97 HOH HOH . E 5 HOH A 82 582 5 HOH HOH . E 5 HOH A 83 583 28 HOH HOH . E 5 HOH A 84 584 129 HOH HOH . E 5 HOH A 85 585 89 HOH HOH . E 5 HOH A 86 586 182 HOH HOH . E 5 HOH A 87 587 64 HOH HOH . E 5 HOH A 88 588 73 HOH HOH . E 5 HOH A 89 589 162 HOH HOH . E 5 HOH A 90 590 185 HOH HOH . E 5 HOH A 91 591 115 HOH HOH . E 5 HOH A 92 592 10 HOH HOH . E 5 HOH A 93 593 198 HOH HOH . E 5 HOH A 94 594 180 HOH HOH . E 5 HOH A 95 595 98 HOH HOH . E 5 HOH A 96 596 174 HOH HOH . E 5 HOH A 97 597 218 HOH HOH . E 5 HOH A 98 598 215 HOH HOH . E 5 HOH A 99 599 184 HOH HOH . E 5 HOH A 100 600 92 HOH HOH . E 5 HOH A 101 601 151 HOH HOH . E 5 HOH A 102 602 149 HOH HOH . E 5 HOH A 103 603 222 HOH HOH . E 5 HOH A 104 604 138 HOH HOH . E 5 HOH A 105 605 113 HOH HOH . E 5 HOH A 106 606 219 HOH HOH . E 5 HOH A 107 607 189 HOH HOH . E 5 HOH A 108 608 207 HOH HOH . E 5 HOH A 109 609 187 HOH HOH . E 5 HOH A 110 610 120 HOH HOH . E 5 HOH A 111 611 211 HOH HOH . E 5 HOH A 112 612 132 HOH HOH . E 5 HOH A 113 613 154 HOH HOH . E 5 HOH A 114 614 176 HOH HOH . E 5 HOH A 115 615 65 HOH HOH . E 5 HOH A 116 616 209 HOH HOH . E 5 HOH A 117 617 190 HOH HOH . E 5 HOH A 118 618 193 HOH HOH . E 5 HOH A 119 619 136 HOH HOH . E 5 HOH A 120 620 148 HOH HOH . E 5 HOH A 121 621 59 HOH HOH . E 5 HOH A 122 622 208 HOH HOH . E 5 HOH A 123 623 163 HOH HOH . E 5 HOH A 124 624 178 HOH HOH . E 5 HOH A 125 625 205 HOH HOH . E 5 HOH A 126 626 80 HOH HOH . E 5 HOH A 127 627 101 HOH HOH . E 5 HOH A 128 628 196 HOH HOH . E 5 HOH A 129 629 175 HOH HOH . E 5 HOH A 130 630 195 HOH HOH . E 5 HOH A 131 631 201 HOH HOH . E 5 HOH A 132 632 106 HOH HOH . E 5 HOH A 133 633 224 HOH HOH . E 5 HOH A 134 634 188 HOH HOH . E 5 HOH A 135 635 150 HOH HOH . E 5 HOH A 136 636 217 HOH HOH . E 5 HOH A 137 637 144 HOH HOH . E 5 HOH A 138 638 210 HOH HOH . E 5 HOH A 139 639 204 HOH HOH . E 5 HOH A 140 640 77 HOH HOH . E 5 HOH A 141 641 206 HOH HOH . E 5 HOH A 142 642 179 HOH HOH . E 5 HOH A 143 643 30 HOH HOH . E 5 HOH A 144 644 216 HOH HOH . E 5 HOH A 145 645 181 HOH HOH . E 5 HOH A 146 646 183 HOH HOH . E 5 HOH A 147 647 142 HOH HOH . E 5 HOH A 148 648 123 HOH HOH . E 5 HOH A 149 649 191 HOH HOH . E 5 HOH A 150 650 87 HOH HOH . E 5 HOH A 151 651 127 HOH HOH . E 5 HOH A 152 652 112 HOH HOH . E 5 HOH A 153 653 165 HOH HOH . E 5 HOH A 154 654 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 5.02 59.575 68.165 1 45.35 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . C 3 3.624 59.707 68.477 1 53.04 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . C 3 5.856 60.488 69.054 1 42.67 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . C 3 5.83 61.887 68.64 1 31.14 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . C 3 6.493 62.709 69.637 1 43.84 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . C 3 7.986 62.454 69.707 1 49.65 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . C 3 8.689 63.685 69.911 1 57.19 ? O4 PEG 402 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #