data_5JDH # _model_server_result.job_id zw8fqSYYwU4m4gE1y2oWkw _model_server_result.datetime_utc '2024-11-14 17:12:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5JDH # _exptl.entry_id 5JDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JDH _cell.length_a 49.883 _cell.length_b 72.218 _cell.length_c 96.099 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 E CA CA . A CA 404 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.608 ? metalc ? metalc8 A O ILE 118 A ILE 118 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A OD1 ASP 121 A ASP 121 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc10 A O GLY 122 A GLY 122 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 A OD2 ASP 127 A ASP 127 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc12 A O THR 209 A THR 209 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 A OE2 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc14 A OE1 GLU 213 A GLU 213 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 A OE2 GLU 213 A GLU 213 1_555 E CA CA . A CA 404 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.542 ? metalc ? metalc16 A OE2 GLU 213 A GLU 213 1_555 E CA CA . A CA 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.334 ? metalc ? metalc17 A OG SER 236 A SER 236 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc18 A OD1 ASP 240 A ASP 240 1_555 E CA CA . A CA 404 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.819 ? metalc ? metalc19 A OD2 ASP 240 A ASP 240 1_555 E CA CA . A CA 404 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.709 ? metalc ? metalc20 D CA CA . A CA 403 1_555 X O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc21 D CA CA . A CA 403 1_555 X O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc22 E CA CA . A CA 404 1_555 X O HOH . A HOH 509 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JDH _atom_sites.fract_transf_matrix[1][1] 0.020047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 3 NA A 1 402 2 NA NA . D 4 CA A 1 403 1 CA CA . E 4 CA A 1 404 2 CA CA . F 5 MYS A 1 405 9 MYS FAT . G 5 MYS A 1 406 13 MYS FAT . H 5 MYS A 1 407 15 MYS FAT . I 5 MYS A 1 408 18 MYS FAT . J 5 MYS A 1 409 19 MYS FAT . K 5 MYS A 1 410 20 MYS FAT . L 5 MYS A 1 411 22 MYS FAT . M 5 MYS A 1 412 23 MYS FAT . N 5 MYS A 1 413 26 MYS FAT . O 5 MYS A 1 414 27 MYS FAT . P 5 MYS A 1 415 28 MYS FAT . Q 5 MYS A 1 416 29 MYS FAT . R 6 1PE A 1 417 1 1PE PEG . S 6 1PE A 1 418 2 1PE PEG . T 7 PE8 A 1 419 3 PE8 PEG . U 6 1PE A 1 420 4 1PE PEG . V 8 PEG A 1 421 5 PEG PEG . W 9 OLC A 1 422 1 OLC MON . X 10 HOH A 1 501 57 HOH HOH . X 10 HOH A 2 502 14 HOH HOH . X 10 HOH A 3 503 4 HOH HOH . X 10 HOH A 4 504 17 HOH HOH . X 10 HOH A 5 505 18 HOH HOH . X 10 HOH A 6 506 8 HOH HOH . X 10 HOH A 7 507 49 HOH HOH . X 10 HOH A 8 508 2 HOH HOH . X 10 HOH A 9 509 54 HOH HOH . X 10 HOH A 10 510 27 HOH HOH . X 10 HOH A 11 511 21 HOH HOH . X 10 HOH A 12 512 20 HOH HOH . X 10 HOH A 13 513 41 HOH HOH . X 10 HOH A 14 514 1 HOH HOH . X 10 HOH A 15 515 6 HOH HOH . X 10 HOH A 16 516 11 HOH HOH . X 10 HOH A 17 517 22 HOH HOH . X 10 HOH A 18 518 23 HOH HOH . X 10 HOH A 19 519 28 HOH HOH . X 10 HOH A 20 520 47 HOH HOH . X 10 HOH A 21 521 10 HOH HOH . X 10 HOH A 22 522 33 HOH HOH . X 10 HOH A 23 523 5 HOH HOH . X 10 HOH A 24 524 13 HOH HOH . X 10 HOH A 25 525 24 HOH HOH . X 10 HOH A 26 526 15 HOH HOH . X 10 HOH A 27 527 32 HOH HOH . X 10 HOH A 28 528 34 HOH HOH . X 10 HOH A 29 529 29 HOH HOH . X 10 HOH A 30 530 26 HOH HOH . X 10 HOH A 31 531 7 HOH HOH . X 10 HOH A 32 532 16 HOH HOH . X 10 HOH A 33 533 55 HOH HOH . X 10 HOH A 34 534 30 HOH HOH . X 10 HOH A 35 535 45 HOH HOH . X 10 HOH A 36 536 12 HOH HOH . X 10 HOH A 37 537 53 HOH HOH . X 10 HOH A 38 538 37 HOH HOH . X 10 HOH A 39 539 35 HOH HOH . X 10 HOH A 40 540 3 HOH HOH . X 10 HOH A 41 541 46 HOH HOH . X 10 HOH A 42 542 25 HOH HOH . X 10 HOH A 43 543 56 HOH HOH . X 10 HOH A 44 544 40 HOH HOH . X 10 HOH A 45 545 36 HOH HOH . X 10 HOH A 46 546 50 HOH HOH . X 10 HOH A 47 547 19 HOH HOH . X 10 HOH A 48 548 31 HOH HOH . X 10 HOH A 49 549 43 HOH HOH . X 10 HOH A 50 550 9 HOH HOH . X 10 HOH A 51 551 38 HOH HOH . X 10 HOH A 52 552 51 HOH HOH . X 10 HOH A 53 553 52 HOH HOH . X 10 HOH A 54 554 44 HOH HOH . X 10 HOH A 55 555 42 HOH HOH . X 10 HOH A 56 556 48 HOH HOH . X 10 HOH A 57 557 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.316 _atom_site.Cartn_y 19.634 _atom_site.Cartn_z 3.001 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #