data_5JDQ # _model_server_result.job_id YDNptEWtt-GuFq8JTk8iZg _model_server_result.datetime_utc '2024-11-26 18:10:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 5JDQ # _exptl.entry_id 5JDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JDQ _cell.length_a 49.876 _cell.length_b 72.425 _cell.length_c 95.913 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 A OG SER 77 A SER 77 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc9 A O ILE 118 A ILE 118 1_555 E SR SR . A SR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc10 A OD1 ASP 121 A ASP 121 1_555 E SR SR . A SR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc11 A O GLY 122 A GLY 122 1_555 E SR SR . A SR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc12 A OD2 ASP 127 A ASP 127 1_555 E SR SR . A SR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc13 A O ALA 206 A ALA 206 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc14 A O THR 209 A THR 209 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc15 A OG1 THR 209 A THR 209 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc16 A OG SER 210 A SER 210 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc17 A OE2 GLU 213 A GLU 213 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc18 A OE1 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc20 A OG SER 236 A SER 236 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc21 E SR SR . A SR 404 1_555 P O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 274 n n C1 H11 MYS sing 275 n n C1 H12 MYS sing 276 n n C1 H13 MYS sing 277 n n C2 C3 MYS sing 278 n n C2 H21 MYS sing 279 n n C2 H22 MYS sing 280 n n C3 C4 MYS sing 281 n n C3 H31 MYS sing 282 n n C3 H32 MYS sing 283 n n C4 C5 MYS sing 284 n n C4 H41 MYS sing 285 n n C4 H42 MYS sing 286 n n C5 C6 MYS sing 287 n n C5 H51 MYS sing 288 n n C5 H52 MYS sing 289 n n C6 C7 MYS sing 290 n n C6 H61 MYS sing 291 n n C6 H62 MYS sing 292 n n C7 C8 MYS sing 293 n n C7 H71 MYS sing 294 n n C7 H72 MYS sing 295 n n C8 C9 MYS sing 296 n n C8 H81 MYS sing 297 n n C8 H82 MYS sing 298 n n C9 C10 MYS sing 299 n n C9 H91 MYS sing 300 n n C9 H92 MYS sing 301 n n C10 C11 MYS sing 302 n n C10 H101 MYS sing 303 n n C10 H102 MYS sing 304 n n C11 C12 MYS sing 305 n n C11 H111 MYS sing 306 n n C11 H112 MYS sing 307 n n C12 C13 MYS sing 308 n n C12 H121 MYS sing 309 n n C12 H122 MYS sing 310 n n C13 C14 MYS sing 311 n n C13 H131 MYS sing 312 n n C13 H132 MYS sing 313 n n C14 C15 MYS sing 314 n n C14 H141 MYS sing 315 n n C14 H142 MYS sing 316 n n C15 H151 MYS sing 317 n n C15 H152 MYS sing 318 n n C15 H153 MYS sing 319 n n # _atom_sites.entry_id 5JDQ _atom_sites.fract_transf_matrix[1][1] 0.02005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 2 NA A 1 402 2 NA NA . D 2 NA A 1 403 4 NA NA . E 3 SR A 1 404 1 SR SR . F 4 CL A 1 405 1 CL CL . G 4 CL A 1 406 2 CL CL . H 5 OLC A 1 407 1 OLC MON . I 5 OLC A 1 408 2 OLC MON . J 6 MYS A 1 409 1 MYS FAT . K 6 MYS A 1 410 2 MYS FAT . L 6 MYS A 1 411 3 MYS FAT . M 6 MYS A 1 412 4 MYS FAT . N 6 MYS A 1 413 5 MYS FAT . O 7 1PE A 1 414 1 1PE PEG . P 8 HOH A 1 501 16 HOH HOH . P 8 HOH A 2 502 4 HOH HOH . P 8 HOH A 3 503 13 HOH HOH . P 8 HOH A 4 504 2 HOH HOH . P 8 HOH A 5 505 15 HOH HOH . P 8 HOH A 6 506 10 HOH HOH . P 8 HOH A 7 507 14 HOH HOH . P 8 HOH A 8 508 7 HOH HOH . P 8 HOH A 9 509 6 HOH HOH . P 8 HOH A 10 510 11 HOH HOH . P 8 HOH A 11 511 3 HOH HOH . P 8 HOH A 12 512 12 HOH HOH . P 8 HOH A 13 513 9 HOH HOH . P 8 HOH A 14 514 17 HOH HOH . P 8 HOH A 15 515 5 HOH HOH . P 8 HOH A 16 516 8 HOH HOH . P 8 HOH A 17 517 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MYS . . . J 6 10.895 7.433 10.256 1 61.66 ? C2 MYS 409 A 1 HETATM 2 C C3 MYS . . . J 6 11.088 7.776 11.736 1 63.23 ? C3 MYS 409 A 1 HETATM 3 C C4 MYS . . . J 6 11.592 6.539 12.484 1 64.7 ? C4 MYS 409 A 1 HETATM 4 C C5 MYS . . . J 6 11.802 6.862 13.969 1 69.23 ? C5 MYS 409 A 1 HETATM 5 C C6 MYS . . . J 6 10.487 7.299 14.617 1 58.69 ? C6 MYS 409 A 1 HETATM 6 C C7 MYS . . . J 6 10.726 7.622 16.098 1 61.86 ? C7 MYS 409 A 1 HETATM 7 C C8 MYS . . . J 6 11.746 8.76 16.219 1 66.31 ? C8 MYS 409 A 1 HETATM 8 C C9 MYS . . . J 6 11.988 9.101 17.694 1 62.61 ? C9 MYS 409 A 1 HETATM 9 C C10 MYS . . . J 6 12.998 10.251 17.792 1 65.63 ? C10 MYS 409 A 1 HETATM 10 C C11 MYS . . . J 6 13.25 10.612 19.26 1 63.18 ? C11 MYS 409 A 1 HETATM 11 C C12 MYS . . . J 6 14.256 11.765 19.337 1 58.94 ? C12 MYS 409 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 11 #