data_5JEF # _model_server_result.job_id 6oL0kelRJFM1aRxc_Y07Cg _model_server_result.datetime_utc '2024-11-04 22:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5JEF # _exptl.entry_id 5JEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.62 _cell.angle_gamma 90 _cell.entry_id 5JEF _cell.length_a 53.464 _cell.length_b 39.865 _cell.length_c 120.361 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 285 n n N O2 NO3 sing 286 n n N O3 NO3 sing 287 n n # _atom_sites.entry_id 5JEF _atom_sites.fract_transf_matrix[1][1] 0.018704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003509 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 301 1 NO3 NO3 . D 3 LFA A 1 302 16 LFA LFA . E 4 HOH A 1 401 34 HOH HOH . E 4 HOH A 2 402 14 HOH HOH . E 4 HOH A 3 403 8 HOH HOH . E 4 HOH A 4 404 32 HOH HOH . E 4 HOH A 5 405 26 HOH HOH . E 4 HOH A 6 406 59 HOH HOH . E 4 HOH A 7 407 38 HOH HOH . E 4 HOH A 8 408 37 HOH HOH . E 4 HOH A 9 409 21 HOH HOH . E 4 HOH A 10 410 9 HOH HOH . E 4 HOH A 11 411 19 HOH HOH . E 4 HOH A 12 412 40 HOH HOH . E 4 HOH A 13 413 15 HOH HOH . E 4 HOH A 14 414 7 HOH HOH . E 4 HOH A 15 415 42 HOH HOH . E 4 HOH A 16 416 41 HOH HOH . E 4 HOH A 17 417 4 HOH HOH . E 4 HOH A 18 418 50 HOH HOH . E 4 HOH A 19 419 20 HOH HOH . E 4 HOH A 20 420 27 HOH HOH . E 4 HOH A 21 421 58 HOH HOH . E 4 HOH A 22 422 18 HOH HOH . E 4 HOH A 23 423 28 HOH HOH . E 4 HOH A 24 424 57 HOH HOH . E 4 HOH A 25 425 39 HOH HOH . E 4 HOH A 26 426 56 HOH HOH . E 4 HOH A 27 427 30 HOH HOH . E 4 HOH A 28 428 22 HOH HOH . F 4 HOH B 1 301 44 HOH HOH . F 4 HOH B 2 302 5 HOH HOH . F 4 HOH B 3 303 25 HOH HOH . F 4 HOH B 4 304 3 HOH HOH . F 4 HOH B 5 305 16 HOH HOH . F 4 HOH B 6 306 29 HOH HOH . F 4 HOH B 7 307 62 HOH HOH . F 4 HOH B 8 308 47 HOH HOH . F 4 HOH B 9 309 36 HOH HOH . F 4 HOH B 10 310 23 HOH HOH . F 4 HOH B 11 311 33 HOH HOH . F 4 HOH B 12 312 31 HOH HOH . F 4 HOH B 13 313 48 HOH HOH . F 4 HOH B 14 314 24 HOH HOH . F 4 HOH B 15 315 43 HOH HOH . F 4 HOH B 16 316 11 HOH HOH . F 4 HOH B 17 317 51 HOH HOH . F 4 HOH B 18 318 45 HOH HOH . F 4 HOH B 19 319 1 HOH HOH . F 4 HOH B 20 320 52 HOH HOH . F 4 HOH B 21 321 17 HOH HOH . F 4 HOH B 22 322 2 HOH HOH . F 4 HOH B 23 323 13 HOH HOH . F 4 HOH B 24 324 54 HOH HOH . F 4 HOH B 25 325 12 HOH HOH . F 4 HOH B 26 326 10 HOH HOH . F 4 HOH B 27 327 6 HOH HOH . F 4 HOH B 28 328 60 HOH HOH . F 4 HOH B 29 329 46 HOH HOH . F 4 HOH B 30 330 49 HOH HOH . F 4 HOH B 31 331 35 HOH HOH . F 4 HOH B 32 332 55 HOH HOH . F 4 HOH B 33 333 61 HOH HOH . F 4 HOH B 34 334 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . C 2 15.857 -8.37 36.242 1 30.73 ? N NO3 301 A 1 HETATM 2 O O1 NO3 . . . C 2 15.565 -8.345 35.048 1 24.63 ? O1 NO3 301 A 1 HETATM 3 O O2 NO3 . . . C 2 14.883 -8.586 37.223 1 29.31 ? O2 NO3 301 A 1 HETATM 4 O O3 NO3 . . . C 2 17.182 -8.19 36.654 1 28.2 ? O3 NO3 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #