data_5JFE # _model_server_result.job_id EII-iWSq8KqH94_aKNckIA _model_server_result.datetime_utc '2024-11-27 21:56:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5JFE # _exptl.entry_id 5JFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFE _cell.length_a 110.322 _cell.length_b 110.322 _cell.length_c 120.765 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 y-1/2,x+1/2,-z-1/2 0 1 0 1 0 0 0 0 -1 -55.161 55.161 -60.3825 3 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 110.322 0 4 'crystal symmetry operation' 16_554 -y+1/2,-x+1/2,-z-1/2 0 -1 0 -1 0 0 0 0 -1 55.161 55.161 -60.3825 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 5JFE _atom_sites.fract_transf_matrix[1][1] 0.009064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 1 FAD FAD . C 3 UMC A 1 302 1 UMC LIG . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 4 EDO EDO . H 4 EDO A 1 307 5 EDO EDO . I 5 HOH A 1 401 42 HOH HOH . I 5 HOH A 2 402 93 HOH HOH . I 5 HOH A 3 403 106 HOH HOH . I 5 HOH A 4 404 47 HOH HOH . I 5 HOH A 5 405 14 HOH HOH . I 5 HOH A 6 406 39 HOH HOH . I 5 HOH A 7 407 20 HOH HOH . I 5 HOH A 8 408 57 HOH HOH . I 5 HOH A 9 409 87 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 34 HOH HOH . I 5 HOH A 12 412 84 HOH HOH . I 5 HOH A 13 413 25 HOH HOH . I 5 HOH A 14 414 58 HOH HOH . I 5 HOH A 15 415 100 HOH HOH . I 5 HOH A 16 416 99 HOH HOH . I 5 HOH A 17 417 91 HOH HOH . I 5 HOH A 18 418 43 HOH HOH . I 5 HOH A 19 419 81 HOH HOH . I 5 HOH A 20 420 74 HOH HOH . I 5 HOH A 21 421 2 HOH HOH . I 5 HOH A 22 422 71 HOH HOH . I 5 HOH A 23 423 54 HOH HOH . I 5 HOH A 24 424 95 HOH HOH . I 5 HOH A 25 425 88 HOH HOH . I 5 HOH A 26 426 68 HOH HOH . I 5 HOH A 27 427 24 HOH HOH . I 5 HOH A 28 428 63 HOH HOH . I 5 HOH A 29 429 70 HOH HOH . I 5 HOH A 30 430 109 HOH HOH . I 5 HOH A 31 431 73 HOH HOH . I 5 HOH A 32 432 22 HOH HOH . I 5 HOH A 33 433 78 HOH HOH . I 5 HOH A 34 434 5 HOH HOH . I 5 HOH A 35 435 67 HOH HOH . I 5 HOH A 36 436 51 HOH HOH . I 5 HOH A 37 437 30 HOH HOH . I 5 HOH A 38 438 86 HOH HOH . I 5 HOH A 39 439 8 HOH HOH . I 5 HOH A 40 440 44 HOH HOH . I 5 HOH A 41 441 3 HOH HOH . I 5 HOH A 42 442 90 HOH HOH . I 5 HOH A 43 443 110 HOH HOH . I 5 HOH A 44 444 62 HOH HOH . I 5 HOH A 45 445 77 HOH HOH . I 5 HOH A 46 446 13 HOH HOH . I 5 HOH A 47 447 31 HOH HOH . I 5 HOH A 48 448 107 HOH HOH . I 5 HOH A 49 449 79 HOH HOH . I 5 HOH A 50 450 105 HOH HOH . I 5 HOH A 51 451 36 HOH HOH . I 5 HOH A 52 452 102 HOH HOH . I 5 HOH A 53 453 50 HOH HOH . I 5 HOH A 54 454 49 HOH HOH . I 5 HOH A 55 455 52 HOH HOH . I 5 HOH A 56 456 9 HOH HOH . I 5 HOH A 57 457 17 HOH HOH . I 5 HOH A 58 458 76 HOH HOH . I 5 HOH A 59 459 35 HOH HOH . I 5 HOH A 60 460 69 HOH HOH . I 5 HOH A 61 461 6 HOH HOH . I 5 HOH A 62 462 66 HOH HOH . I 5 HOH A 63 463 29 HOH HOH . I 5 HOH A 64 464 72 HOH HOH . I 5 HOH A 65 465 11 HOH HOH . I 5 HOH A 66 466 108 HOH HOH . I 5 HOH A 67 467 92 HOH HOH . I 5 HOH A 68 468 83 HOH HOH . I 5 HOH A 69 469 41 HOH HOH . I 5 HOH A 70 470 7 HOH HOH . I 5 HOH A 71 471 16 HOH HOH . I 5 HOH A 72 472 97 HOH HOH . I 5 HOH A 73 473 10 HOH HOH . I 5 HOH A 74 474 61 HOH HOH . I 5 HOH A 75 475 101 HOH HOH . I 5 HOH A 76 476 45 HOH HOH . I 5 HOH A 77 477 65 HOH HOH . I 5 HOH A 78 478 40 HOH HOH . I 5 HOH A 79 479 85 HOH HOH . I 5 HOH A 80 480 53 HOH HOH . I 5 HOH A 81 481 89 HOH HOH . I 5 HOH A 82 482 94 HOH HOH . I 5 HOH A 83 483 38 HOH HOH . I 5 HOH A 84 484 75 HOH HOH . I 5 HOH A 85 485 23 HOH HOH . I 5 HOH A 86 486 59 HOH HOH . I 5 HOH A 87 487 60 HOH HOH . I 5 HOH A 88 488 48 HOH HOH . I 5 HOH A 89 489 28 HOH HOH . I 5 HOH A 90 490 19 HOH HOH . I 5 HOH A 91 491 37 HOH HOH . I 5 HOH A 92 492 80 HOH HOH . I 5 HOH A 93 493 46 HOH HOH . I 5 HOH A 94 494 64 HOH HOH . I 5 HOH A 95 495 98 HOH HOH . I 5 HOH A 96 496 12 HOH HOH . I 5 HOH A 97 497 82 HOH HOH . I 5 HOH A 98 498 1 HOH HOH . I 5 HOH A 99 499 104 HOH HOH . I 5 HOH A 100 500 15 HOH HOH . I 5 HOH A 101 501 4 HOH HOH . I 5 HOH A 102 502 18 HOH HOH . I 5 HOH A 103 503 32 HOH HOH . I 5 HOH A 104 504 56 HOH HOH . I 5 HOH A 105 505 33 HOH HOH . I 5 HOH A 106 506 96 HOH HOH . I 5 HOH A 107 507 27 HOH HOH . I 5 HOH A 108 508 55 HOH HOH . I 5 HOH A 109 509 26 HOH HOH . I 5 HOH A 110 510 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -0.384 46.611 -29.429 1 14.54 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 0.743 46.908 -30.349 1 14.15 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 -0.125 46.861 -27.945 1 11.88 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 -1.652 47.491 -29.822 1 14.81 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 -2.801 47.507 -28.958 1 12.15 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 -3.953 47.897 -29.846 1 15.39 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 -3.73 49.237 -30.343 1 16.9 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 -4.125 47.04 -31.094 1 15.85 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 -4.915 45.887 -30.821 1 17.38 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 -4.795 48.011 -32.07 1 17.61 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 -6.173 48.156 -31.749 1 16.58 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 -4.116 49.334 -31.699 1 16.46 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 -2.945 49.694 -32.487 1 16.75 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 -1.701 50.009 -31.999 1 15.29 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 -0.893 50.523 -32.896 1 17.69 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 -1.649 50.526 -34.058 1 16.11 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 -1.375 50.968 -35.37 1 15.84 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 -0.219 51.524 -35.738 1 13.81 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 -2.347 50.817 -36.302 1 15.95 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 -3.51 50.26 -35.939 1 14.9 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 -3.892 49.835 -34.731 1 15.92 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 -2.908 49.999 -33.826 1 16.04 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 3.835 39.153 -35.583 1 14.3 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 4.613 39.003 -36.687 1 17.58 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 5.258 39.953 -37.157 1 17.79 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 4.728 37.734 -37.27 1 14.85 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 4.088 36.578 -36.831 1 17.24 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 4.326 35.499 -37.361 1 15.84 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 3.241 36.765 -35.687 1 16.46 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 2.598 35.716 -35.207 1 18.39 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 1.875 35.883 -34.028 1 17.7 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 1.215 34.779 -33.472 1 16.29 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 0.489 34.889 -32.286 1 19.88 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 -0.174 33.659 -31.707 1 18.55 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 0.415 36.148 -31.634 1 17.73 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 -0.341 36.336 -30.34 1 15.81 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 1.072 37.24 -32.188 1 15.41 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 1.806 37.124 -33.368 1 16.8 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 2.502 38.22 -33.934 1 15.73 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 3.205 38.087 -35.096 1 14.54 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 2.485 39.537 -33.268 1 15.8 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 1.214 40.328 -33.566 1 18.56 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 1.118 40.594 -34.965 1 21.71 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 1.148 41.608 -32.727 1 15.67 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 2.272 42.421 -33.051 1 14.99 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 1.095 41.449 -31.206 1 15.59 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 0.19 40.389 -30.888 1 15.17 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 0.676 42.712 -30.485 1 15.17 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 -0.746 42.829 -30.732 1 17.01 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 -1.392 44.273 -30.88 1 15.14 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 -2.871 44.115 -30.802 1 15.45 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 -0.967 44.961 -32.17 1 12.65 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 -0.869 45.106 -29.623 1 15.18 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #