data_5JFO # _model_server_result.job_id W7hsRU7gfFAB3lLgwqFHlQ _model_server_result.datetime_utc '2024-11-21 23:34:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5JFO # _exptl.entry_id 5JFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFO _cell.length_a 90.161 _cell.length_b 104.239 _cell.length_c 190.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 285 n n PA O2A NAD sing 286 n n PA O5B NAD sing 287 n n PA O3 NAD sing 288 n n O2A HOA2 NAD sing 289 n n O5B C5B NAD sing 290 n n C5B C4B NAD sing 291 n n C5B H51A NAD sing 292 n n C5B H52A NAD sing 293 n n C4B O4B NAD sing 294 n n C4B C3B NAD sing 295 n n C4B H4B NAD sing 296 n n O4B C1B NAD sing 297 n n C3B O3B NAD sing 298 n n C3B C2B NAD sing 299 n n C3B H3B NAD sing 300 n n O3B HO3A NAD sing 301 n n C2B O2B NAD sing 302 n n C2B C1B NAD sing 303 n n C2B H2B NAD sing 304 n n O2B HO2A NAD sing 305 n n C1B N9A NAD sing 306 n n C1B H1B NAD sing 307 n n N9A C8A NAD sing 308 n y N9A C4A NAD sing 309 n y C8A N7A NAD doub 310 n y C8A H8A NAD sing 311 n n N7A C5A NAD sing 312 n y C5A C6A NAD sing 313 n y C5A C4A NAD doub 314 n y C6A N6A NAD sing 315 n n C6A N1A NAD doub 316 n y N6A H61A NAD sing 317 n n N6A H62A NAD sing 318 n n N1A C2A NAD sing 319 n y C2A N3A NAD doub 320 n y C2A H2A NAD sing 321 n n N3A C4A NAD sing 322 n y O3 PN NAD sing 323 n n PN O1N NAD doub 324 n n PN O2N NAD sing 325 n n PN O5D NAD sing 326 n n O5D C5D NAD sing 327 n n C5D C4D NAD sing 328 n n C5D H51N NAD sing 329 n n C5D H52N NAD sing 330 n n C4D O4D NAD sing 331 n n C4D C3D NAD sing 332 n n C4D H4D NAD sing 333 n n O4D C1D NAD sing 334 n n C3D O3D NAD sing 335 n n C3D C2D NAD sing 336 n n C3D H3D NAD sing 337 n n O3D HO3N NAD sing 338 n n C2D O2D NAD sing 339 n n C2D C1D NAD sing 340 n n C2D H2D NAD sing 341 n n O2D HO2N NAD sing 342 n n C1D N1N NAD sing 343 n n C1D H1D NAD sing 344 n n N1N C2N NAD sing 345 n y N1N C6N NAD doub 346 n y C2N C3N NAD doub 347 n y C2N H2N NAD sing 348 n n C3N C7N NAD sing 349 n n C3N C4N NAD sing 350 n y C7N O7N NAD doub 351 n n C7N N7N NAD sing 352 n n N7N H71N NAD sing 353 n n N7N H72N NAD sing 354 n n C4N C5N NAD doub 355 n y C4N H4N NAD sing 356 n n C5N C6N NAD sing 357 n y C5N H5N NAD sing 358 n n C6N H6N NAD sing 359 n n # _atom_sites.entry_id 5JFO _atom_sites.fract_transf_matrix[1][1] 0.011091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 4346 NAD NAD . F 3 6KA A 1 302 3 6KA 625 . G 2 NAD B 1 301 4348 NAD NAD . H 3 6KA B 1 302 2 6KA 625 . I 2 NAD C 1 301 4345 NAD NAD . J 3 6KA C 1 302 1 6KA 625 . K 2 NAD D 1 301 4347 NAD NAD . L 3 6KA D 1 302 4 6KA 625 . M 4 HOH A 1 401 49 HOH HOH . M 4 HOH A 2 402 18 HOH HOH . M 4 HOH A 3 403 59 HOH HOH . M 4 HOH A 4 404 23 HOH HOH . M 4 HOH A 5 405 50 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 32 HOH HOH . M 4 HOH A 8 408 35 HOH HOH . M 4 HOH A 9 409 14 HOH HOH . M 4 HOH A 10 410 43 HOH HOH . M 4 HOH A 11 411 56 HOH HOH . M 4 HOH A 12 412 44 HOH HOH . M 4 HOH A 13 413 15 HOH HOH . M 4 HOH A 14 414 7 HOH HOH . M 4 HOH A 15 415 46 HOH HOH . M 4 HOH A 16 416 12 HOH HOH . M 4 HOH A 17 417 28 HOH HOH . N 4 HOH B 1 401 30 HOH HOH . N 4 HOH B 2 402 48 HOH HOH . N 4 HOH B 3 403 26 HOH HOH . N 4 HOH B 4 404 17 HOH HOH . N 4 HOH B 5 405 45 HOH HOH . N 4 HOH B 6 406 53 HOH HOH . N 4 HOH B 7 407 22 HOH HOH . N 4 HOH B 8 408 3 HOH HOH . N 4 HOH B 9 409 16 HOH HOH . N 4 HOH B 10 410 40 HOH HOH . N 4 HOH B 11 411 37 HOH HOH . N 4 HOH B 12 412 2 HOH HOH . N 4 HOH B 13 413 21 HOH HOH . N 4 HOH B 14 414 52 HOH HOH . O 4 HOH C 1 401 6 HOH HOH . O 4 HOH C 2 402 31 HOH HOH . O 4 HOH C 3 403 51 HOH HOH . O 4 HOH C 4 404 61 HOH HOH . O 4 HOH C 5 405 42 HOH HOH . O 4 HOH C 6 406 8 HOH HOH . O 4 HOH C 7 407 5 HOH HOH . O 4 HOH C 8 408 60 HOH HOH . O 4 HOH C 9 409 25 HOH HOH . O 4 HOH C 10 410 4 HOH HOH . O 4 HOH C 11 411 10 HOH HOH . O 4 HOH C 12 412 58 HOH HOH . O 4 HOH C 13 413 54 HOH HOH . O 4 HOH C 14 414 39 HOH HOH . O 4 HOH C 15 415 34 HOH HOH . O 4 HOH C 16 416 55 HOH HOH . O 4 HOH C 17 417 27 HOH HOH . P 4 HOH D 1 401 57 HOH HOH . P 4 HOH D 2 402 29 HOH HOH . P 4 HOH D 3 403 41 HOH HOH . P 4 HOH D 4 404 33 HOH HOH . P 4 HOH D 5 405 24 HOH HOH . P 4 HOH D 6 406 38 HOH HOH . P 4 HOH D 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -47.132 -4.175 35.185 1 62.7 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . E 2 -48.589 -4.136 35.481 1 69.45 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . E 2 -46.373 -3.323 36.126 1 75.17 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . E 2 -46.876 -3.734 33.679 1 61.26 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . E 2 -47.736 -4.252 32.695 1 60.19 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . E 2 -47.776 -3.184 31.618 1 70.21 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . E 2 -48.622 -3.491 30.504 1 60.15 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . E 2 -48.285 -1.916 32.297 1 51.15 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . E 2 -47.214 -0.996 32.278 1 62.23 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . E 2 -49.448 -1.458 31.44 1 44.23 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . E 2 -49.403 -0.054 31.27 1 82.44 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . E 2 -49.172 -2.234 30.145 1 62.25 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . E 2 -50.342 -2.23 29.258 1 60.13 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . E 2 -51.594 -2.74 29.475 1 64.77 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . E 2 -52.343 -2.454 28.381 1 63.87 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . E 2 -51.592 -1.765 27.489 1 67.43 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . E 2 -51.872 -1.239 26.236 1 64.05 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . E 2 -53.052 -1.439 25.641 1 63.89 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . E 2 -50.869 -0.57 25.577 1 61.17 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . E 2 -49.614 -0.434 26.14 1 57.25 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . E 2 -49.341 -0.967 27.378 1 49.08 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . E 2 -50.328 -1.616 28.036 1 65.04 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . E 2 -46.706 -5.72 35.136 1 60.96 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . E 2 -45.201 -6.274 35.229 1 68.79 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . E 2 -45.086 -7.258 36.323 1 63.75 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . E 2 -44.249 -5.156 35.076 1 71.13 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . E 2 -45.128 -7.151 33.897 1 57.75 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . E 2 -44.834 -6.515 32.682 1 46.61 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . E 2 -44.457 -7.635 31.731 1 46.46 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . E 2 -43.715 -8.656 32.378 1 52.67 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . E 2 -45.693 -8.329 31.224 1 54.16 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . E 2 -45.333 -8.606 29.895 1 63.14 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . E 2 -45.8 -9.619 32.02 1 58.28 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . E 2 -46.436 -10.597 31.234 1 61.92 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . E 2 -44.331 -9.933 32.256 1 50.69 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . E 2 -43.997 -10.856 33.385 1 50.1 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . E 2 -44.33 -10.587 34.685 1 49.06 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . E 2 -43.971 -11.495 35.683 1 59.55 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . E 2 -44.409 -11.324 37.113 1 69.54 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . E 2 -44.841 -12.465 37.826 1 83.7 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . E 2 -44.36 -10.136 37.707 1 48.53 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . E 2 -43.266 -12.657 35.371 1 51.62 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . E 2 -42.912 -12.934 34.066 1 44.59 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . E 2 -43.293 -12.007 33.096 1 64.95 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #