data_5JFO # _model_server_result.job_id xmMEj26hmysVvLKnyR8YaQ _model_server_result.datetime_utc '2024-11-22 00:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5JFO # _exptl.entry_id 5JFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFO _cell.length_a 90.161 _cell.length_b 104.239 _cell.length_c 190.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 285 n n PA O2A NAD sing 286 n n PA O5B NAD sing 287 n n PA O3 NAD sing 288 n n O2A HOA2 NAD sing 289 n n O5B C5B NAD sing 290 n n C5B C4B NAD sing 291 n n C5B H51A NAD sing 292 n n C5B H52A NAD sing 293 n n C4B O4B NAD sing 294 n n C4B C3B NAD sing 295 n n C4B H4B NAD sing 296 n n O4B C1B NAD sing 297 n n C3B O3B NAD sing 298 n n C3B C2B NAD sing 299 n n C3B H3B NAD sing 300 n n O3B HO3A NAD sing 301 n n C2B O2B NAD sing 302 n n C2B C1B NAD sing 303 n n C2B H2B NAD sing 304 n n O2B HO2A NAD sing 305 n n C1B N9A NAD sing 306 n n C1B H1B NAD sing 307 n n N9A C8A NAD sing 308 n y N9A C4A NAD sing 309 n y C8A N7A NAD doub 310 n y C8A H8A NAD sing 311 n n N7A C5A NAD sing 312 n y C5A C6A NAD sing 313 n y C5A C4A NAD doub 314 n y C6A N6A NAD sing 315 n n C6A N1A NAD doub 316 n y N6A H61A NAD sing 317 n n N6A H62A NAD sing 318 n n N1A C2A NAD sing 319 n y C2A N3A NAD doub 320 n y C2A H2A NAD sing 321 n n N3A C4A NAD sing 322 n y O3 PN NAD sing 323 n n PN O1N NAD doub 324 n n PN O2N NAD sing 325 n n PN O5D NAD sing 326 n n O5D C5D NAD sing 327 n n C5D C4D NAD sing 328 n n C5D H51N NAD sing 329 n n C5D H52N NAD sing 330 n n C4D O4D NAD sing 331 n n C4D C3D NAD sing 332 n n C4D H4D NAD sing 333 n n O4D C1D NAD sing 334 n n C3D O3D NAD sing 335 n n C3D C2D NAD sing 336 n n C3D H3D NAD sing 337 n n O3D HO3N NAD sing 338 n n C2D O2D NAD sing 339 n n C2D C1D NAD sing 340 n n C2D H2D NAD sing 341 n n O2D HO2N NAD sing 342 n n C1D N1N NAD sing 343 n n C1D H1D NAD sing 344 n n N1N C2N NAD sing 345 n y N1N C6N NAD doub 346 n y C2N C3N NAD doub 347 n y C2N H2N NAD sing 348 n n C3N C7N NAD sing 349 n n C3N C4N NAD sing 350 n y C7N O7N NAD doub 351 n n C7N N7N NAD sing 352 n n N7N H71N NAD sing 353 n n N7N H72N NAD sing 354 n n C4N C5N NAD doub 355 n y C4N H4N NAD sing 356 n n C5N C6N NAD sing 357 n y C5N H5N NAD sing 358 n n C6N H6N NAD sing 359 n n # _atom_sites.entry_id 5JFO _atom_sites.fract_transf_matrix[1][1] 0.011091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 4346 NAD NAD . F 3 6KA A 1 302 3 6KA 625 . G 2 NAD B 1 301 4348 NAD NAD . H 3 6KA B 1 302 2 6KA 625 . I 2 NAD C 1 301 4345 NAD NAD . J 3 6KA C 1 302 1 6KA 625 . K 2 NAD D 1 301 4347 NAD NAD . L 3 6KA D 1 302 4 6KA 625 . M 4 HOH A 1 401 49 HOH HOH . M 4 HOH A 2 402 18 HOH HOH . M 4 HOH A 3 403 59 HOH HOH . M 4 HOH A 4 404 23 HOH HOH . M 4 HOH A 5 405 50 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 32 HOH HOH . M 4 HOH A 8 408 35 HOH HOH . M 4 HOH A 9 409 14 HOH HOH . M 4 HOH A 10 410 43 HOH HOH . M 4 HOH A 11 411 56 HOH HOH . M 4 HOH A 12 412 44 HOH HOH . M 4 HOH A 13 413 15 HOH HOH . M 4 HOH A 14 414 7 HOH HOH . M 4 HOH A 15 415 46 HOH HOH . M 4 HOH A 16 416 12 HOH HOH . M 4 HOH A 17 417 28 HOH HOH . N 4 HOH B 1 401 30 HOH HOH . N 4 HOH B 2 402 48 HOH HOH . N 4 HOH B 3 403 26 HOH HOH . N 4 HOH B 4 404 17 HOH HOH . N 4 HOH B 5 405 45 HOH HOH . N 4 HOH B 6 406 53 HOH HOH . N 4 HOH B 7 407 22 HOH HOH . N 4 HOH B 8 408 3 HOH HOH . N 4 HOH B 9 409 16 HOH HOH . N 4 HOH B 10 410 40 HOH HOH . N 4 HOH B 11 411 37 HOH HOH . N 4 HOH B 12 412 2 HOH HOH . N 4 HOH B 13 413 21 HOH HOH . N 4 HOH B 14 414 52 HOH HOH . O 4 HOH C 1 401 6 HOH HOH . O 4 HOH C 2 402 31 HOH HOH . O 4 HOH C 3 403 51 HOH HOH . O 4 HOH C 4 404 61 HOH HOH . O 4 HOH C 5 405 42 HOH HOH . O 4 HOH C 6 406 8 HOH HOH . O 4 HOH C 7 407 5 HOH HOH . O 4 HOH C 8 408 60 HOH HOH . O 4 HOH C 9 409 25 HOH HOH . O 4 HOH C 10 410 4 HOH HOH . O 4 HOH C 11 411 10 HOH HOH . O 4 HOH C 12 412 58 HOH HOH . O 4 HOH C 13 413 54 HOH HOH . O 4 HOH C 14 414 39 HOH HOH . O 4 HOH C 15 415 34 HOH HOH . O 4 HOH C 16 416 55 HOH HOH . O 4 HOH C 17 417 27 HOH HOH . P 4 HOH D 1 401 57 HOH HOH . P 4 HOH D 2 402 29 HOH HOH . P 4 HOH D 3 403 41 HOH HOH . P 4 HOH D 4 404 33 HOH HOH . P 4 HOH D 5 405 24 HOH HOH . P 4 HOH D 6 406 38 HOH HOH . P 4 HOH D 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 -60.026 -29.22 6.737 1 75.88 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . G 2 -60.065 -27.955 5.967 1 73.29 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . G 2 -60.349 -30.393 5.903 1 72.53 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . G 2 -60.977 -29.139 8.018 1 84.1 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . G 2 -60.908 -28.076 8.936 1 64.72 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . G 2 -62.309 -28.067 9.534 1 74.77 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . G 2 -62.545 -26.961 10.379 1 73.12 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . G 2 -63.414 -28.043 8.474 1 72.57 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . G 2 -64.122 -29.246 8.619 1 76.67 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . G 2 -64.356 -26.9 8.828 1 74.84 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . G 2 -65.74 -27.243 8.638 1 67.46 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . G 2 -63.927 -26.663 10.278 1 80.24 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . G 2 -64.22 -25.305 10.74 1 72.12 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . G 2 -63.704 -24.106 10.319 1 63.81 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . G 2 -64.29 -23.128 11.048 1 56.15 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . G 2 -65.169 -23.701 11.907 1 58.68 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . G 2 -66.024 -23.164 12.856 1 69.74 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . G 2 -66.366 -21.869 12.795 1 59.56 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . G 2 -66.791 -24.059 13.581 1 79.98 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . G 2 -66.727 -25.432 13.368 1 72.29 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . G 2 -65.876 -25.948 12.417 1 49.64 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . G 2 -65.124 -25.075 11.718 1 54.55 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . G 2 -58.617 -29.318 7.496 1 91.96 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . G 2 -57.782 -30.671 7.749 1 80.51 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . G 2 -56.591 -30.545 6.883 1 73.41 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . G 2 -58.643 -31.877 7.714 1 75.24 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . G 2 -57.312 -30.517 9.274 1 95.1 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . G 2 -58.271 -30.49 10.308 1 88.93 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . G 2 -57.598 -30.102 11.623 1 74.65 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . G 2 -56.344 -30.761 11.747 1 79.8 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . G 2 -57.33 -28.604 11.673 1 75.35 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . G 2 -57.641 -28.145 12.971 1 75.14 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . G 2 -55.835 -28.471 11.422 1 79.92 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . G 2 -55.269 -27.349 12.078 1 80.81 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . G 2 -55.302 -29.805 11.932 1 80.72 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . G 2 -54.096 -30.183 11.183 1 62.31 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . G 2 -54.164 -30.257 9.83 1 81.96 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . G 2 -53.042 -30.605 9.094 1 85.47 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . G 2 -53.124 -30.677 7.606 1 70.04 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . G 2 -51.929 -30.677 6.861 1 68.89 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . G 2 -54.328 -30.746 7.035 1 87.86 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . G 2 -51.845 -30.896 9.73 1 78.23 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . G 2 -51.781 -30.826 11.115 1 73.97 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . G 2 -52.924 -30.467 11.831 1 71.94 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #