data_5JFO # _model_server_result.job_id z0PTEc0VKcv9-Jpn-UYr3w _model_server_result.datetime_utc '2024-11-21 23:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 5JFO # _exptl.entry_id 5JFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFO _cell.length_a 90.161 _cell.length_b 104.239 _cell.length_c 190.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 285 n n PA O2A NAD sing 286 n n PA O5B NAD sing 287 n n PA O3 NAD sing 288 n n O2A HOA2 NAD sing 289 n n O5B C5B NAD sing 290 n n C5B C4B NAD sing 291 n n C5B H51A NAD sing 292 n n C5B H52A NAD sing 293 n n C4B O4B NAD sing 294 n n C4B C3B NAD sing 295 n n C4B H4B NAD sing 296 n n O4B C1B NAD sing 297 n n C3B O3B NAD sing 298 n n C3B C2B NAD sing 299 n n C3B H3B NAD sing 300 n n O3B HO3A NAD sing 301 n n C2B O2B NAD sing 302 n n C2B C1B NAD sing 303 n n C2B H2B NAD sing 304 n n O2B HO2A NAD sing 305 n n C1B N9A NAD sing 306 n n C1B H1B NAD sing 307 n n N9A C8A NAD sing 308 n y N9A C4A NAD sing 309 n y C8A N7A NAD doub 310 n y C8A H8A NAD sing 311 n n N7A C5A NAD sing 312 n y C5A C6A NAD sing 313 n y C5A C4A NAD doub 314 n y C6A N6A NAD sing 315 n n C6A N1A NAD doub 316 n y N6A H61A NAD sing 317 n n N6A H62A NAD sing 318 n n N1A C2A NAD sing 319 n y C2A N3A NAD doub 320 n y C2A H2A NAD sing 321 n n N3A C4A NAD sing 322 n y O3 PN NAD sing 323 n n PN O1N NAD doub 324 n n PN O2N NAD sing 325 n n PN O5D NAD sing 326 n n O5D C5D NAD sing 327 n n C5D C4D NAD sing 328 n n C5D H51N NAD sing 329 n n C5D H52N NAD sing 330 n n C4D O4D NAD sing 331 n n C4D C3D NAD sing 332 n n C4D H4D NAD sing 333 n n O4D C1D NAD sing 334 n n C3D O3D NAD sing 335 n n C3D C2D NAD sing 336 n n C3D H3D NAD sing 337 n n O3D HO3N NAD sing 338 n n C2D O2D NAD sing 339 n n C2D C1D NAD sing 340 n n C2D H2D NAD sing 341 n n O2D HO2N NAD sing 342 n n C1D N1N NAD sing 343 n n C1D H1D NAD sing 344 n n N1N C2N NAD sing 345 n y N1N C6N NAD doub 346 n y C2N C3N NAD doub 347 n y C2N H2N NAD sing 348 n n C3N C7N NAD sing 349 n n C3N C4N NAD sing 350 n y C7N O7N NAD doub 351 n n C7N N7N NAD sing 352 n n N7N H71N NAD sing 353 n n N7N H72N NAD sing 354 n n C4N C5N NAD doub 355 n y C4N H4N NAD sing 356 n n C5N C6N NAD sing 357 n y C5N H5N NAD sing 358 n n C6N H6N NAD sing 359 n n # _atom_sites.entry_id 5JFO _atom_sites.fract_transf_matrix[1][1] 0.011091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 4346 NAD NAD . F 3 6KA A 1 302 3 6KA 625 . G 2 NAD B 1 301 4348 NAD NAD . H 3 6KA B 1 302 2 6KA 625 . I 2 NAD C 1 301 4345 NAD NAD . J 3 6KA C 1 302 1 6KA 625 . K 2 NAD D 1 301 4347 NAD NAD . L 3 6KA D 1 302 4 6KA 625 . M 4 HOH A 1 401 49 HOH HOH . M 4 HOH A 2 402 18 HOH HOH . M 4 HOH A 3 403 59 HOH HOH . M 4 HOH A 4 404 23 HOH HOH . M 4 HOH A 5 405 50 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 32 HOH HOH . M 4 HOH A 8 408 35 HOH HOH . M 4 HOH A 9 409 14 HOH HOH . M 4 HOH A 10 410 43 HOH HOH . M 4 HOH A 11 411 56 HOH HOH . M 4 HOH A 12 412 44 HOH HOH . M 4 HOH A 13 413 15 HOH HOH . M 4 HOH A 14 414 7 HOH HOH . M 4 HOH A 15 415 46 HOH HOH . M 4 HOH A 16 416 12 HOH HOH . M 4 HOH A 17 417 28 HOH HOH . N 4 HOH B 1 401 30 HOH HOH . N 4 HOH B 2 402 48 HOH HOH . N 4 HOH B 3 403 26 HOH HOH . N 4 HOH B 4 404 17 HOH HOH . N 4 HOH B 5 405 45 HOH HOH . N 4 HOH B 6 406 53 HOH HOH . N 4 HOH B 7 407 22 HOH HOH . N 4 HOH B 8 408 3 HOH HOH . N 4 HOH B 9 409 16 HOH HOH . N 4 HOH B 10 410 40 HOH HOH . N 4 HOH B 11 411 37 HOH HOH . N 4 HOH B 12 412 2 HOH HOH . N 4 HOH B 13 413 21 HOH HOH . N 4 HOH B 14 414 52 HOH HOH . O 4 HOH C 1 401 6 HOH HOH . O 4 HOH C 2 402 31 HOH HOH . O 4 HOH C 3 403 51 HOH HOH . O 4 HOH C 4 404 61 HOH HOH . O 4 HOH C 5 405 42 HOH HOH . O 4 HOH C 6 406 8 HOH HOH . O 4 HOH C 7 407 5 HOH HOH . O 4 HOH C 8 408 60 HOH HOH . O 4 HOH C 9 409 25 HOH HOH . O 4 HOH C 10 410 4 HOH HOH . O 4 HOH C 11 411 10 HOH HOH . O 4 HOH C 12 412 58 HOH HOH . O 4 HOH C 13 413 54 HOH HOH . O 4 HOH C 14 414 39 HOH HOH . O 4 HOH C 15 415 34 HOH HOH . O 4 HOH C 16 416 55 HOH HOH . O 4 HOH C 17 417 27 HOH HOH . P 4 HOH D 1 401 57 HOH HOH . P 4 HOH D 2 402 29 HOH HOH . P 4 HOH D 3 403 41 HOH HOH . P 4 HOH D 4 404 33 HOH HOH . P 4 HOH D 5 405 24 HOH HOH . P 4 HOH D 6 406 38 HOH HOH . P 4 HOH D 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . K 2 -11.223 -28.743 20.028 1 114.91 ? PA NAD 301 D 1 HETATM 2 O O1A NAD . . . K 2 -10.785 -29.896 19.206 1 106.24 ? O1A NAD 301 D 1 HETATM 3 O O2A NAD . . . K 2 -10.58 -27.485 19.581 1 99.74 ? O2A NAD 301 D 1 HETATM 4 O O5B NAD . . . K 2 -10.961 -28.977 21.586 1 93.21 ? O5B NAD 301 D 1 HETATM 5 C C5B NAD . . . K 2 -11.385 -30.141 22.236 1 82.4 ? C5B NAD 301 D 1 HETATM 6 C C4B NAD . . . K 2 -10.563 -30.106 23.511 1 93.15 ? C4B NAD 301 D 1 HETATM 7 O O4B NAD . . . K 2 -10.779 -31.279 24.262 1 98.11 ? O4B NAD 301 D 1 HETATM 8 C C3B NAD . . . K 2 -9.052 -30.053 23.243 1 95.26 ? C3B NAD 301 D 1 HETATM 9 O O3B NAD . . . K 2 -8.523 -28.797 23.602 1 92.22 ? O3B NAD 301 D 1 HETATM 10 C C2B NAD . . . K 2 -8.433 -31.091 24.156 1 78.54 ? C2B NAD 301 D 1 HETATM 11 O O2B NAD . . . K 2 -7.431 -30.498 24.958 1 101.71 ? O2B NAD 301 D 1 HETATM 12 C C1B NAD . . . K 2 -9.61 -31.459 25.032 1 78.16 ? C1B NAD 301 D 1 HETATM 13 N N9A NAD . . . K 2 -9.466 -32.807 25.588 1 77.27 ? N9A NAD 301 D 1 HETATM 14 C C8A NAD . . . K 2 -9.637 -34.011 24.96 1 69.83 ? C8A NAD 301 D 1 HETATM 15 N N7A NAD . . . K 2 -9.401 -34.984 25.873 1 61.48 ? N7A NAD 301 D 1 HETATM 16 C C5A NAD . . . K 2 -9.079 -34.413 27.044 1 64.73 ? C5A NAD 301 D 1 HETATM 17 C C6A NAD . . . K 2 -8.762 -34.974 28.255 1 73.64 ? C6A NAD 301 D 1 HETATM 18 N N6A NAD . . . K 2 -8.535 -36.288 28.279 1 68.46 ? N6A NAD 301 D 1 HETATM 19 N N1A NAD . . . K 2 -8.484 -34.131 29.315 1 80.05 ? N1A NAD 301 D 1 HETATM 20 C C2A NAD . . . K 2 -8.533 -32.751 29.144 1 83.3 ? C2A NAD 301 D 1 HETATM 21 N N3A NAD . . . K 2 -8.854 -32.2 27.919 1 63.54 ? N3A NAD 301 D 1 HETATM 22 C C4A NAD . . . K 2 -9.126 -33.039 26.892 1 74.35 ? C4A NAD 301 D 1 HETATM 23 O O3 NAD . . . K 2 -12.819 -28.681 20.091 1 103.73 ? O3 NAD 301 D 1 HETATM 24 P PN NAD . . . K 2 -13.697 -27.387 19.739 1 101.9 ? PN NAD 301 D 1 HETATM 25 O O1N NAD . . . K 2 -14.275 -27.654 18.404 1 91.89 ? O1N NAD 301 D 1 HETATM 26 O O2N NAD . . . K 2 -13.06 -26.109 20.129 1 75.97 ? O2N NAD 301 D 1 HETATM 27 O O5D NAD . . . K 2 -14.855 -27.567 20.824 1 122.28 ? O5D NAD 301 D 1 HETATM 28 C C5D NAD . . . K 2 -14.595 -27.383 22.201 1 106.06 ? C5D NAD 301 D 1 HETATM 29 C C4D NAD . . . K 2 -15.833 -27.862 22.972 1 101.27 ? C4D NAD 301 D 1 HETATM 30 O O4D NAD . . . K 2 -17.008 -27.23 22.456 1 97.7 ? O4D NAD 301 D 1 HETATM 31 C C3D NAD . . . K 2 -16.038 -29.376 22.839 1 90.45 ? C3D NAD 301 D 1 HETATM 32 O O3D NAD . . . K 2 -16.348 -29.967 24.094 1 81.87 ? O3D NAD 301 D 1 HETATM 33 C C2D NAD . . . K 2 -17.217 -29.517 21.885 1 83.49 ? C2D NAD 301 D 1 HETATM 34 O O2D NAD . . . K 2 -18.034 -30.614 22.232 1 94.39 ? O2D NAD 301 D 1 HETATM 35 C C1D NAD . . . K 2 -17.966 -28.2 22.05 1 86.39 ? C1D NAD 301 D 1 HETATM 36 N N1N NAD . . . K 2 -18.599 -27.792 20.788 1 86.06 ? N1N NAD 301 D 1 HETATM 37 C C2N NAD . . . K 2 -17.818 -27.53 19.697 1 94.46 ? C2N NAD 301 D 1 HETATM 38 C C3N NAD . . . K 2 -18.371 -27.143 18.481 1 94.68 ? C3N NAD 301 D 1 HETATM 39 C C7N NAD . . . K 2 -17.608 -27.453 17.228 1 93.17 ? C7N NAD 301 D 1 HETATM 40 O O7N NAD . . . K 2 -18.278 -27.402 15.99 1 84.46 ? O7N NAD 301 D 1 HETATM 41 N N7N NAD . . . K 2 -16.314 -27.769 17.311 1 98.93 ? N7N NAD 301 D 1 HETATM 42 C C4N NAD . . . K 2 -19.753 -27.005 18.399 1 92.31 ? C4N NAD 301 D 1 HETATM 43 C C5N NAD . . . K 2 -20.548 -27.269 19.518 1 89.93 ? C5N NAD 301 D 1 HETATM 44 C C6N NAD . . . K 2 -19.957 -27.662 20.718 1 82.34 ? C6N NAD 301 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #