data_5JFO # _model_server_result.job_id xLUEVg0YmjpEsYyC9bQOgg _model_server_result.datetime_utc '2024-11-22 00:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5JFO # _exptl.entry_id 5JFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.891 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-[(2-chloro-6-fluorophenyl)methyl]-1H-pyrazol-3-yl}-5-[(1S)-1-(3-methyl-1H-pyrazol-1-yl)ethyl]-1,3,4-thiadiazol-2-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFO _cell.length_a 90.161 _cell.length_b 104.239 _cell.length_c 190.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C18 H17 Cl F N7 S' _chem_comp.formula_weight 417.891 _chem_comp.id 6KA _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-[(2-chloro-6-fluorophenyl)methyl]-1H-pyrazol-3-yl}-5-[(1S)-1-(3-methyl-1H-pyrazol-1-yl)ethyl]-1,3,4-thiadiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C25 6KA sing 1 n n C22 C21 6KA sing 2 n n N24 C25 6KA doub 3 n y N24 N23 6KA sing 4 n y C25 C26 6KA sing 5 n y N19 C18 6KA doub 6 n y N19 N20 6KA sing 7 n y N23 C21 6KA sing 8 n n N23 C27 6KA sing 9 n y C26 C27 6KA doub 10 n y C21 C18 6KA sing 11 n n C18 S17 6KA sing 12 n y N20 C16 6KA doub 13 n y C16 S17 6KA sing 14 n y C16 N15 6KA sing 15 n n N15 C13 6KA sing 16 n n C13 N14 6KA doub 17 n y C13 C12 6KA sing 18 n y N14 N10 6KA sing 19 n y C12 C11 6KA doub 20 n y C6 C5 6KA doub 21 n y C6 C1 6KA sing 22 n y CL7 C1 6KA sing 23 n n C5 C4 6KA sing 24 n y C1 C2 6KA doub 25 n y N10 C11 6KA sing 26 n y N10 C9 6KA sing 27 n n C4 C3 6KA doub 28 n y C2 C3 6KA sing 29 n y C2 C9 6KA sing 30 n n C3 F8 6KA sing 31 n n C4 H1 6KA sing 32 n n C5 H2 6KA sing 33 n n C6 H3 6KA sing 34 n n C9 H4 6KA sing 35 n n C9 H5 6KA sing 36 n n C11 H6 6KA sing 37 n n C12 H7 6KA sing 38 n n C21 H8 6KA sing 39 n n C22 H9 6KA sing 40 n n C22 H10 6KA sing 41 n n C22 H11 6KA sing 42 n n C26 H12 6KA sing 43 n n N15 H13 6KA sing 44 n n C27 H14 6KA sing 45 n n C28 H15 6KA sing 46 n n C28 H16 6KA sing 47 n n C28 H17 6KA sing 48 n n # _atom_sites.entry_id 5JFO _atom_sites.fract_transf_matrix[1][1] 0.011091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 4346 NAD NAD . F 3 6KA A 1 302 3 6KA 625 . G 2 NAD B 1 301 4348 NAD NAD . H 3 6KA B 1 302 2 6KA 625 . I 2 NAD C 1 301 4345 NAD NAD . J 3 6KA C 1 302 1 6KA 625 . K 2 NAD D 1 301 4347 NAD NAD . L 3 6KA D 1 302 4 6KA 625 . M 4 HOH A 1 401 49 HOH HOH . M 4 HOH A 2 402 18 HOH HOH . M 4 HOH A 3 403 59 HOH HOH . M 4 HOH A 4 404 23 HOH HOH . M 4 HOH A 5 405 50 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 32 HOH HOH . M 4 HOH A 8 408 35 HOH HOH . M 4 HOH A 9 409 14 HOH HOH . M 4 HOH A 10 410 43 HOH HOH . M 4 HOH A 11 411 56 HOH HOH . M 4 HOH A 12 412 44 HOH HOH . M 4 HOH A 13 413 15 HOH HOH . M 4 HOH A 14 414 7 HOH HOH . M 4 HOH A 15 415 46 HOH HOH . M 4 HOH A 16 416 12 HOH HOH . M 4 HOH A 17 417 28 HOH HOH . N 4 HOH B 1 401 30 HOH HOH . N 4 HOH B 2 402 48 HOH HOH . N 4 HOH B 3 403 26 HOH HOH . N 4 HOH B 4 404 17 HOH HOH . N 4 HOH B 5 405 45 HOH HOH . N 4 HOH B 6 406 53 HOH HOH . N 4 HOH B 7 407 22 HOH HOH . N 4 HOH B 8 408 3 HOH HOH . N 4 HOH B 9 409 16 HOH HOH . N 4 HOH B 10 410 40 HOH HOH . N 4 HOH B 11 411 37 HOH HOH . N 4 HOH B 12 412 2 HOH HOH . N 4 HOH B 13 413 21 HOH HOH . N 4 HOH B 14 414 52 HOH HOH . O 4 HOH C 1 401 6 HOH HOH . O 4 HOH C 2 402 31 HOH HOH . O 4 HOH C 3 403 51 HOH HOH . O 4 HOH C 4 404 61 HOH HOH . O 4 HOH C 5 405 42 HOH HOH . O 4 HOH C 6 406 8 HOH HOH . O 4 HOH C 7 407 5 HOH HOH . O 4 HOH C 8 408 60 HOH HOH . O 4 HOH C 9 409 25 HOH HOH . O 4 HOH C 10 410 4 HOH HOH . O 4 HOH C 11 411 10 HOH HOH . O 4 HOH C 12 412 58 HOH HOH . O 4 HOH C 13 413 54 HOH HOH . O 4 HOH C 14 414 39 HOH HOH . O 4 HOH C 15 415 34 HOH HOH . O 4 HOH C 16 416 55 HOH HOH . O 4 HOH C 17 417 27 HOH HOH . P 4 HOH D 1 401 57 HOH HOH . P 4 HOH D 2 402 29 HOH HOH . P 4 HOH D 3 403 41 HOH HOH . P 4 HOH D 4 404 33 HOH HOH . P 4 HOH D 5 405 24 HOH HOH . P 4 HOH D 6 406 38 HOH HOH . P 4 HOH D 7 407 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6KA . . . F 3 -51.835 -11.89 39.315 1 48.09 ? C1 6KA 302 A 1 HETATM 2 C C2 6KA . . . F 3 -53.301 -11.937 39.302 1 72.05 ? C2 6KA 302 A 1 HETATM 3 C C3 6KA . . . F 3 -53.909 -13.285 39.275 1 75.94 ? C3 6KA 302 A 1 HETATM 4 C C4 6KA . . . F 3 -53.084 -14.399 39.279 1 78.05 ? C4 6KA 302 A 1 HETATM 5 C C5 6KA . . . F 3 -51.702 -14.284 39.29 1 80.55 ? C5 6KA 302 A 1 HETATM 6 C C6 6KA . . . F 3 -51.086 -13.042 39.312 1 78.11 ? C6 6KA 302 A 1 HETATM 7 C C9 6KA . . . F 3 -54.105 -10.654 39.313 1 74.04 ? C9 6KA 302 A 1 HETATM 8 C C11 6KA . . . F 3 -56.009 -11.165 37.632 1 71.48 ? C11 6KA 302 A 1 HETATM 9 C C12 6KA . . . F 3 -56.054 -10.875 36.272 1 74.09 ? C12 6KA 302 A 1 HETATM 10 C C13 6KA . . . F 3 -54.849 -10.244 35.968 1 67.76 ? C13 6KA 302 A 1 HETATM 11 C C16 6KA . . . F 3 -53.027 -9.397 34.654 1 59.46 ? C16 6KA 302 A 1 HETATM 12 C C18 6KA . . . F 3 -50.626 -8.823 34.512 1 49.99 ? C18 6KA 302 A 1 HETATM 13 C C21 6KA . . . F 3 -49.219 -8.625 34.849 1 64.85 ? C21 6KA 302 A 1 HETATM 14 C C22 6KA . . . F 3 -48.616 -7.889 33.648 1 61.5 ? C22 6KA 302 A 1 HETATM 15 C C25 6KA . . . F 3 -47.756 -11.807 34.33 1 72.31 ? C25 6KA 302 A 1 HETATM 16 C C26 6KA . . . F 3 -47.65 -11.808 35.724 1 73.84 ? C26 6KA 302 A 1 HETATM 17 F F8 6KA . . . F 3 -55.235 -13.459 39.261 1 78.51 ? F8 6KA 302 A 1 HETATM 18 CL CL7 6KA . . . F 3 -51.049 -10.311 39.334 1 92.03 ? CL7 6KA 302 A 1 HETATM 19 N N10 6KA . . . F 3 -54.822 -10.695 38.06 1 60.36 ? N10 6KA 302 A 1 HETATM 20 N N14 6KA . . . F 3 -54.078 -10.111 37.05 1 65.85 ? N14 6KA 302 A 1 HETATM 21 N N15 6KA . . . F 3 -54.324 -9.74 34.843 1 49.9 ? N15 6KA 302 A 1 HETATM 22 N N20 6KA . . . F 3 -52.718 -8.813 33.473 1 71.95 ? N20 6KA 302 A 1 HETATM 23 N N19 6KA . . . F 3 -51.33 -8.483 33.399 1 58.2 ? N19 6KA 302 A 1 HETATM 24 S S17 6KA . . . F 3 -51.64 -9.567 35.7 1 65.73 ? S17 6KA 302 A 1 HETATM 25 N N23 6KA . . . F 3 -48.596 -9.954 35.069 1 73.77 ? N23 6KA 302 A 1 HETATM 26 C C27 6KA . . . F 3 -48.184 -10.603 36.169 1 44.72 ? C27 6KA 302 A 1 HETATM 27 N N24 6KA . . . F 3 -48.323 -10.675 33.889 1 62.01 ? N24 6KA 302 A 1 HETATM 28 C C28 6KA . . . F 3 -47.233 -13.017 33.599 1 58.04 ? C28 6KA 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #