data_5JFU # _model_server_result.job_id 28M4h1AdeSpj7KlbFWyaeg _model_server_result.datetime_utc '2024-11-21 23:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5JFU # _exptl.entry_id 5JFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 654.813 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-{benzyl[(4-methoxyphenyl)sulfonyl]amino}-3-hydroxy-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]butan-2-yl}carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JFU _cell.length_a 58.958 _cell.length_b 86.378 _cell.length_c 45.918 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H46 N2 O8 S' _chem_comp.formula_weight 654.813 _chem_comp.id 6KQ _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-{benzyl[(4-methoxyphenyl)sulfonyl]amino}-3-hydroxy-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]butan-2-yl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C56 C57 6KQ sing 1 n n C56 C55 6KQ sing 2 n n C57 C60 6KQ sing 3 n n C57 C58 6KQ sing 4 n n C60 C53 6KQ sing 5 n n C58 C51 6KQ sing 6 n n C55 C54 6KQ sing 7 n n C55 C59 6KQ sing 8 n n C54 C53 6KQ sing 9 n n C53 C52 6KQ sing 10 n n C59 C51 6KQ sing 11 n n C51 C52 6KQ sing 12 n n C51 C32 6KQ sing 13 n n C3 C4 6KQ doub 14 n y C3 C2 6KQ sing 15 n y O39 C2 6KQ sing 16 n n O39 C40 6KQ sing 17 n n C4 C5 6KQ sing 18 n y C2 C7 6KQ doub 19 n y O9 S8 6KQ doub 20 n n C7 C6 6KQ sing 21 n y C32 C19 6KQ sing 22 n n C5 C6 6KQ doub 23 n y C5 S8 6KQ sing 24 n n S8 O10 6KQ doub 25 n n S8 N11 6KQ sing 26 n n C19 N20 6KQ sing 27 n n C19 C17 6KQ sing 28 n n C30 C29 6KQ sing 29 n n C30 C31 6KQ sing 30 n n C16 N11 6KQ sing 31 n n C16 C17 6KQ sing 32 n n C29 O28 6KQ sing 33 n n N11 C42 6KQ sing 34 n n N20 C21 6KQ sing 35 n n C17 O18 6KQ sing 36 n n O22 C21 6KQ doub 37 n n C21 O23 6KQ sing 38 n n C31 C24 6KQ sing 39 n n C31 C27 6KQ sing 40 n n O28 C27 6KQ sing 41 n n C42 C48 6KQ sing 42 n n O23 C24 6KQ sing 43 n n C24 C25 6KQ sing 44 n n C27 O26 6KQ sing 45 n n C48 C47 6KQ doub 46 n y C48 C43 6KQ sing 47 n y C47 C46 6KQ sing 48 n y C43 C44 6KQ doub 49 n y O26 C25 6KQ sing 50 n n C46 C45 6KQ doub 51 n y C44 C45 6KQ sing 52 n y C4 H1 6KQ sing 53 n n C6 H2 6KQ sing 54 n n C7 H3 6KQ sing 55 n n C16 H4 6KQ sing 56 n n C16 H5 6KQ sing 57 n n C17 H6 6KQ sing 58 n n O18 H7 6KQ sing 59 n n C29 H8 6KQ sing 60 n n C29 H9 6KQ sing 61 n n C30 H10 6KQ sing 62 n n C30 H11 6KQ sing 63 n n C31 H12 6KQ sing 64 n n C32 H13 6KQ sing 65 n n C32 H14 6KQ sing 66 n n C40 H15 6KQ sing 67 n n C40 H16 6KQ sing 68 n n C40 H17 6KQ sing 69 n n C3 H18 6KQ sing 70 n n C42 H19 6KQ sing 71 n n C42 H20 6KQ sing 72 n n C43 H21 6KQ sing 73 n n C44 H22 6KQ sing 74 n n C45 H23 6KQ sing 75 n n C46 H24 6KQ sing 76 n n C47 H25 6KQ sing 77 n n C19 H26 6KQ sing 78 n n N20 H27 6KQ sing 79 n n C24 H28 6KQ sing 80 n n C25 H29 6KQ sing 81 n n C25 H30 6KQ sing 82 n n C27 H31 6KQ sing 83 n n C52 H32 6KQ sing 84 n n C52 H33 6KQ sing 85 n n C53 H34 6KQ sing 86 n n C54 H35 6KQ sing 87 n n C54 H36 6KQ sing 88 n n C55 H37 6KQ sing 89 n n C56 H38 6KQ sing 90 n n C56 H39 6KQ sing 91 n n C57 H40 6KQ sing 92 n n C58 H41 6KQ sing 93 n n C58 H42 6KQ sing 94 n n C59 H43 6KQ sing 95 n n C59 H44 6KQ sing 96 n n C60 H45 6KQ sing 97 n n C60 H46 6KQ sing 98 n n # _atom_sites.entry_id 5JFU _atom_sites.fract_transf_matrix[1][1] 0.016961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 101 511 CL CL . D 3 6KQ B 1 201 201 6KQ G71 . E 2 CL B 1 202 512 CL CL . F 4 HOH A 1 201 1082 HOH HOH . F 4 HOH A 2 202 1076 HOH HOH . F 4 HOH A 3 203 1061 HOH HOH . F 4 HOH A 4 204 1037 HOH HOH . F 4 HOH A 5 205 1025 HOH HOH . F 4 HOH A 6 206 1054 HOH HOH . F 4 HOH A 7 207 1031 HOH HOH . F 4 HOH A 8 208 1024 HOH HOH . F 4 HOH A 9 209 1058 HOH HOH . F 4 HOH A 10 210 1073 HOH HOH . F 4 HOH A 11 211 1004 HOH HOH . F 4 HOH A 12 212 1085 HOH HOH . F 4 HOH A 13 213 1052 HOH HOH . F 4 HOH A 14 214 1042 HOH HOH . F 4 HOH A 15 215 1013 HOH HOH . F 4 HOH A 16 216 1019 HOH HOH . F 4 HOH A 17 217 1030 HOH HOH . F 4 HOH A 18 218 1041 HOH HOH . F 4 HOH A 19 219 1053 HOH HOH . F 4 HOH A 20 220 1086 HOH HOH . F 4 HOH A 21 221 1094 HOH HOH . F 4 HOH A 22 222 1092 HOH HOH . F 4 HOH A 23 223 1017 HOH HOH . F 4 HOH A 24 224 1023 HOH HOH . F 4 HOH A 25 225 1057 HOH HOH . F 4 HOH A 26 226 1038 HOH HOH . F 4 HOH A 27 227 1043 HOH HOH . F 4 HOH A 28 228 1081 HOH HOH . F 4 HOH A 29 229 1029 HOH HOH . F 4 HOH A 30 230 1071 HOH HOH . F 4 HOH A 31 231 1062 HOH HOH . F 4 HOH A 32 232 1003 HOH HOH . F 4 HOH A 33 233 1005 HOH HOH . F 4 HOH A 34 234 1021 HOH HOH . F 4 HOH A 35 235 1087 HOH HOH . F 4 HOH A 36 236 1033 HOH HOH . F 4 HOH A 37 237 1084 HOH HOH . F 4 HOH A 38 238 1046 HOH HOH . F 4 HOH A 39 239 1088 HOH HOH . F 4 HOH A 40 240 1080 HOH HOH . F 4 HOH A 41 241 1078 HOH HOH . F 4 HOH A 42 242 1067 HOH HOH . G 4 HOH B 1 301 1059 HOH HOH . G 4 HOH B 2 302 1079 HOH HOH . G 4 HOH B 3 303 1039 HOH HOH . G 4 HOH B 4 304 1056 HOH HOH . G 4 HOH B 5 305 1044 HOH HOH . G 4 HOH B 6 306 1070 HOH HOH . G 4 HOH B 7 307 1050 HOH HOH . G 4 HOH B 8 308 1051 HOH HOH . G 4 HOH B 9 309 1026 HOH HOH . G 4 HOH B 10 310 1016 HOH HOH . G 4 HOH B 11 311 1007 HOH HOH . G 4 HOH B 12 312 1018 HOH HOH . G 4 HOH B 13 313 1022 HOH HOH . G 4 HOH B 14 314 1075 HOH HOH . G 4 HOH B 15 315 1077 HOH HOH . G 4 HOH B 16 316 1001 HOH HOH . G 4 HOH B 17 317 1047 HOH HOH . G 4 HOH B 18 318 1014 HOH HOH . G 4 HOH B 19 319 1083 HOH HOH . G 4 HOH B 20 320 1069 HOH HOH . G 4 HOH B 21 321 1028 HOH HOH . G 4 HOH B 22 322 1012 HOH HOH . G 4 HOH B 23 323 1072 HOH HOH . G 4 HOH B 24 324 1015 HOH HOH . G 4 HOH B 25 325 1027 HOH HOH . G 4 HOH B 26 326 1035 HOH HOH . G 4 HOH B 27 327 1089 HOH HOH . G 4 HOH B 28 328 1009 HOH HOH . G 4 HOH B 29 329 1093 HOH HOH . G 4 HOH B 30 330 1074 HOH HOH . G 4 HOH B 31 331 1068 HOH HOH . G 4 HOH B 32 332 1064 HOH HOH . G 4 HOH B 33 333 1034 HOH HOH . G 4 HOH B 34 334 1066 HOH HOH . G 4 HOH B 35 335 1010 HOH HOH . G 4 HOH B 36 336 1060 HOH HOH . G 4 HOH B 37 337 1095 HOH HOH . G 4 HOH B 38 338 1020 HOH HOH . G 4 HOH B 39 339 1002 HOH HOH . G 4 HOH B 40 340 1008 HOH HOH . G 4 HOH B 41 341 1006 HOH HOH . G 4 HOH B 42 342 1011 HOH HOH . G 4 HOH B 43 343 1045 HOH HOH . G 4 HOH B 44 344 1040 HOH HOH . G 4 HOH B 45 345 1032 HOH HOH . G 4 HOH B 46 346 1065 HOH HOH . G 4 HOH B 47 347 1091 HOH HOH . G 4 HOH B 48 348 1049 HOH HOH . G 4 HOH B 49 349 1048 HOH HOH . G 4 HOH B 50 350 1036 HOH HOH . G 4 HOH B 51 351 1055 HOH HOH . G 4 HOH B 52 352 1090 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6KQ . . . D 3 21.202 27.75 14.874 1 24.74 ? C2 6KQ 201 B 1 HETATM 2 C C4 6KQ . . . D 3 19.105 26.564 14.781 1 16.58 ? C4 6KQ 201 B 1 HETATM 3 C C6 6KQ . . . D 3 21.022 25.583 15.894 1 24.79 ? C6 6KQ 201 B 1 HETATM 4 C C7 6KQ . . . D 3 21.807 26.686 15.546 1 25.89 ? C7 6KQ 201 B 1 HETATM 5 O O10 6KQ . . . D 3 19.592 22.992 16.19 1 27.94 ? O10 6KQ 201 B 1 HETATM 6 N N11 6KQ . . . D 3 17.894 24.443 17.39 1 22.37 ? N11 6KQ 201 B 1 HETATM 7 C C16 6KQ . . . D 3 16.591 25.068 17.224 1 21.27 ? C16 6KQ 201 B 1 HETATM 8 C C17 6KQ . . . D 3 15.504 24.15 17.81 1 26.25 ? C17 6KQ 201 B 1 HETATM 9 O O18 6KQ . . . D 3 14.328 24.918 18.067 1 20.97 ? O18 6KQ 201 B 1 HETATM 10 C C21 6KQ . . . D 3 14.552 20.856 18.014 1 18.54 ? C21 6KQ 201 B 1 HETATM 11 O O28 6KQ . . . D 3 10.498 18.766 18.356 1 25.72 ? O28 6KQ 201 B 1 HETATM 12 C C29 6KQ . . . D 3 11.154 19.468 17.309 1 21.96 ? C29 6KQ 201 B 1 HETATM 13 C C30 6KQ . . . D 3 12.333 18.566 16.917 1 16.92 ? C30 6KQ 201 B 1 HETATM 14 C C31 6KQ . . . D 3 12.741 17.953 18.26 1 16.66 ? C31 6KQ 201 B 1 HETATM 15 C C32 6KQ . . . D 3 14.539 23.425 15.573 1 23.84 ? C32 6KQ 201 B 1 HETATM 16 O O39 6KQ . . . D 3 21.921 28.851 14.534 1 28.41 ? O39 6KQ 201 B 1 HETATM 17 C C40 6KQ . . . D 3 23.239 28.822 15.074 1 20.78 ? C40 6KQ 201 B 1 HETATM 18 C C3 6KQ . . . D 3 19.86 27.697 14.506 1 18.39 ? C3 6KQ 201 B 1 HETATM 19 C C5 6KQ . . . D 3 19.669 25.573 15.579 1 20.56 ? C5 6KQ 201 B 1 HETATM 20 S S8 6KQ . . . D 3 18.693 24.17 15.983 1 23.69 ? S8 6KQ 201 B 1 HETATM 21 O O9 6KQ . . . D 3 17.705 23.938 14.881 1 23 ? O9 6KQ 201 B 1 HETATM 22 C C42 6KQ . . . D 3 18.742 24.974 18.427 1 18.25 ? C42 6KQ 201 B 1 HETATM 23 C C43 6KQ . . . D 3 20.492 23.888 19.911 1 22.96 ? C43 6KQ 201 B 1 HETATM 24 C C44 6KQ . . . D 3 20.92 22.879 20.767 1 30.46 ? C44 6KQ 201 B 1 HETATM 25 C C45 6KQ . . . D 3 20.057 21.857 21.137 1 29.26 ? C45 6KQ 201 B 1 HETATM 26 C C46 6KQ . . . D 3 18.745 21.881 20.669 1 33.29 ? C46 6KQ 201 B 1 HETATM 27 C C47 6KQ . . . D 3 18.32 22.881 19.802 1 30.11 ? C47 6KQ 201 B 1 HETATM 28 C C48 6KQ . . . D 3 19.193 23.887 19.411 1 29.86 ? C48 6KQ 201 B 1 HETATM 29 C C19 6KQ . . . D 3 15.197 22.966 16.887 1 21.23 ? C19 6KQ 201 B 1 HETATM 30 N N20 6KQ . . . D 3 14.234 22.064 17.521 1 17.61 ? N20 6KQ 201 B 1 HETATM 31 O O22 6KQ . . . D 3 15.679 20.385 17.978 1 13.79 ? O22 6KQ 201 B 1 HETATM 32 O O23 6KQ . . . D 3 13.525 20.192 18.596 1 25.63 ? O23 6KQ 201 B 1 HETATM 33 C C24 6KQ . . . D 3 13.775 18.834 18.983 1 21.19 ? C24 6KQ 201 B 1 HETATM 34 C C25 6KQ . . . D 3 13.264 18.683 20.429 1 23.14 ? C25 6KQ 201 B 1 HETATM 35 O O26 6KQ . . . D 3 11.839 18.788 20.286 1 23.4 ? O26 6KQ 201 B 1 HETATM 36 C C27 6KQ . . . D 3 11.486 18.059 19.109 1 26.11 ? C27 6KQ 201 B 1 HETATM 37 C C51 6KQ . . . D 3 14.279 22.395 14.465 1 16.11 ? C51 6KQ 201 B 1 HETATM 38 C C52 6KQ . . . D 3 13.003 21.635 14.771 1 14.98 ? C52 6KQ 201 B 1 HETATM 39 C C53 6KQ . . . D 3 12.747 20.614 13.659 1 22.35 ? C53 6KQ 201 B 1 HETATM 40 C C54 6KQ . . . D 3 13.946 19.664 13.515 1 20.25 ? C54 6KQ 201 B 1 HETATM 41 C C55 6KQ . . . D 3 15.224 20.444 13.216 1 19.96 ? C55 6KQ 201 B 1 HETATM 42 C C56 6KQ . . . D 3 15.047 21.206 11.9 1 22.74 ? C56 6KQ 201 B 1 HETATM 43 C C57 6KQ . . . D 3 13.846 22.143 12.02 1 23.61 ? C57 6KQ 201 B 1 HETATM 44 C C58 6KQ . . . D 3 14.103 23.156 13.141 1 23.66 ? C58 6KQ 201 B 1 HETATM 45 C C59 6KQ . . . D 3 15.467 21.448 14.351 1 19.01 ? C59 6KQ 201 B 1 HETATM 46 C C60 6KQ . . . D 3 12.558 21.375 12.336 1 23.95 ? C60 6KQ 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #