data_5JGD
#
_model_server_result.job_id            cAfVeMxhdzDhdzXfO1Mtew 
_model_server_result.datetime_utc      '2025-02-05 08:54:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
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_entry.id    5JGD 
#
_exptl.entry_id    5JGD 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              455.53 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(2-isopropoxy-3-(4-methylpiperazine-1-carbonyl)phenyl)-4-oxo-3,4-dihydrothieno[3,2-d]pyrimidine-7-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JGD 
_cell.length_a            58.167 
_cell.length_b            133.673 
_cell.length_c            141.111 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5JGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H25 N5 O4 S' 
_chem_comp.formula_weight    455.53 
_chem_comp.id                6KD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(2-isopropoxy-3-(4-methylpiperazine-1-carbonyl)phenyl)-4-oxo-3,4-dihydrothieno[3,2-d]pyrimidine-7-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S26 C25 6KD sing 1 n y 
S26 C27 6KD sing 2 n y 
C25 C24 6KD doub 3 n y 
O34 C33 6KD doub 4 n n 
C27 C33 6KD sing 5 n n 
C27 C28 6KD doub 6 n y 
O23 C22 6KD doub 7 n n 
C24 C28 6KD sing 8 n y 
C24 C22 6KD sing 9 n n 
C33 N31 6KD sing 10 n n 
C28 N29 6KD sing 11 n n 
C22 N20 6KD sing 12 n n 
N31 C30 6KD sing 13 n n 
N20 C19 6KD sing 14 n n 
N29 C30 6KD doub 15 n n 
C18 C19 6KD sing 16 n y 
C18 C17 6KD doub 17 n y 
C19 C11 6KD doub 18 n y 
C17 C16 6KD sing 19 n y 
C14 C13 6KD sing 20 n n 
C11 O12 6KD sing 21 n n 
C11 C10 6KD sing 22 n y 
C16 C10 6KD doub 23 n y 
C13 O12 6KD sing 24 n n 
C13 C15 6KD sing 25 n n 
C10 C8 6KD sing 26 n n 
C4 N3 6KD sing 27 n n 
C2 N3 6KD sing 28 n n 
C2 C1 6KD sing 29 n n 
C5 N3 6KD sing 30 n n 
C5 C6 6KD sing 31 n n 
N7 C8 6KD sing 32 n n 
N7 C1 6KD sing 33 n n 
N7 C6 6KD sing 34 n n 
C8 O9 6KD doub 35 n n 
C1 H1 6KD sing 36 n n 
C1 H2 6KD sing 37 n n 
C2 H3 6KD sing 38 n n 
C2 H4 6KD sing 39 n n 
C4 H5 6KD sing 40 n n 
C4 H6 6KD sing 41 n n 
C4 H7 6KD sing 42 n n 
C5 H8 6KD sing 43 n n 
C5 H9 6KD sing 44 n n 
C6 H10 6KD sing 45 n n 
C6 H11 6KD sing 46 n n 
C13 H13 6KD sing 47 n n 
C14 H14 6KD sing 48 n n 
C14 H15 6KD sing 49 n n 
C14 H16 6KD sing 50 n n 
C15 H17 6KD sing 51 n n 
C15 H18 6KD sing 52 n n 
C15 H19 6KD sing 53 n n 
C25 H20 6KD sing 54 n n 
N31 H21 6KD sing 55 n n 
C30 H22 6KD sing 56 n n 
N20 H23 6KD sing 57 n n 
C18 H24 6KD sing 58 n n 
C17 H25 6KD sing 59 n n 
C16 H26 6KD sing 60 n n 
#
_atom_sites.entry_id                     5JGD 
_atom_sites.fract_transf_matrix[1][1]    0.017192 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007087 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6KD A 1 601 1 6KD MOL . 
C 3 HOH A 1 701 3 HOH HOH . 
C 3 HOH A 2 702 5 HOH HOH . 
C 3 HOH A 3 703 6 HOH HOH . 
C 3 HOH A 4 704 14 HOH HOH . 
C 3 HOH A 5 705 4 HOH HOH . 
C 3 HOH A 6 706 2 HOH HOH . 
C 3 HOH A 7 707 1 HOH HOH . 
C 3 HOH A 8 708 17 HOH HOH . 
C 3 HOH A 9 709 7 HOH HOH . 
C 3 HOH A 10 710 12 HOH HOH . 
C 3 HOH A 11 711 18 HOH HOH . 
C 3 HOH A 12 712 16 HOH HOH . 
C 3 HOH A 13 713 13 HOH HOH . 
C 3 HOH A 14 714 10 HOH HOH . 
C 3 HOH A 15 715 9 HOH HOH . 
C 3 HOH A 16 716 11 HOH HOH . 
C 3 HOH A 17 717 15 HOH HOH . 
C 3 HOH A 18 718 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6KD . . . B 2 -20.026 51.419 20.211 1 64.76 ? C1 6KD 601 A 1 
HETATM 2 C C2 6KD . . . B 2 -20.689 52.743 19.66 1 70.25 ? C2 6KD 601 A 1 
HETATM 3 C C4 6KD . . . B 2 -20.554 55.186 19.6 1 72.08 ? C4 6KD 601 A 1 
HETATM 4 C C5 6KD . . . B 2 -18.537 53.849 19.695 1 74.45 ? C5 6KD 601 A 1 
HETATM 5 C C6 6KD . . . B 2 -17.872 52.591 20.297 1 68.89 ? C6 6KD 601 A 1 
HETATM 6 N N3 6KD . . . B 2 -19.944 53.945 20.113 1 75.74 ? N3 6KD 601 A 1 
HETATM 7 C C8 6KD . . . B 2 -17.922 50.152 19.991 1 60.28 ? C8 6KD 601 A 1 
HETATM 8 C C10 6KD . . . B 2 -17.712 49.346 18.734 1 55.2 ? C10 6KD 601 A 1 
HETATM 9 C C11 6KD . . . B 2 -16.457 49.179 18.082 1 52.5 ? C11 6KD 601 A 1 
HETATM 10 C C13 6KD . . . B 2 -15.081 51.208 18.552 1 53.09 ? C13 6KD 601 A 1 
HETATM 11 C C14 6KD . . . B 2 -15.098 51.761 17.142 1 54.67 ? C14 6KD 601 A 1 
HETATM 12 C C15 6KD . . . B 2 -13.784 51.419 19.284 1 52.98 ? C15 6KD 601 A 1 
HETATM 13 O O34 6KD . . . B 2 -8.834 49.492 14.483 1 46.11 ? O34 6KD 601 A 1 
HETATM 14 C C33 6KD . . . B 2 -9.949 49.501 15.01 1 45.01 ? C33 6KD 601 A 1 
HETATM 15 C C27 6KD . . . B 2 -11.007 48.584 14.704 1 45.17 ? C27 6KD 601 A 1 
HETATM 16 S S26 6KD . . . B 2 -10.979 47.292 13.557 1 47.85 ? S26 6KD 601 A 1 
HETATM 17 C C25 6KD . . . B 2 -12.588 46.844 13.919 1 47.07 ? C25 6KD 601 A 1 
HETATM 18 N N31 6KD . . . B 2 -10.295 50.429 15.983 1 44.09 ? N31 6KD 601 A 1 
HETATM 19 C C30 6KD . . . B 2 -11.51 50.474 16.593 1 44.57 ? C30 6KD 601 A 1 
HETATM 20 N N29 6KD . . . B 2 -12.512 49.66 16.351 1 43.81 ? N29 6KD 601 A 1 
HETATM 21 C C28 6KD . . . B 2 -12.241 48.652 15.344 1 44.55 ? C28 6KD 601 A 1 
HETATM 22 C C24 6KD . . . B 2 -13.153 47.636 14.88 1 46.45 ? C24 6KD 601 A 1 
HETATM 23 C C22 6KD . . . B 2 -14.587 47.409 15.345 1 48.83 ? C22 6KD 601 A 1 
HETATM 24 O O23 6KD . . . B 2 -15.264 46.503 14.847 1 49.61 ? O23 6KD 601 A 1 
HETATM 25 N N20 6KD . . . B 2 -15.051 48.264 16.321 1 50.09 ? N20 6KD 601 A 1 
HETATM 26 C C19 6KD . . . B 2 -16.343 48.379 16.927 1 51.28 ? C19 6KD 601 A 1 
HETATM 27 O O12 6KD . . . B 2 -15.296 49.768 18.569 1 52 ? O12 6KD 601 A 1 
HETATM 28 C C18 6KD . . . B 2 -17.484 47.748 16.413 1 51.55 ? C18 6KD 601 A 1 
HETATM 29 C C17 6KD . . . B 2 -18.711 47.906 17.051 1 53.09 ? C17 6KD 601 A 1 
HETATM 30 C C16 6KD . . . B 2 -18.823 48.689 18.197 1 53.53 ? C16 6KD 601 A 1 
HETATM 31 O O9 6KD . . . B 2 -17.48 49.715 21.038 1 60.66 ? O9 6KD 601 A 1 
HETATM 32 N N7 6KD . . . B 2 -18.578 51.35 19.914 1 64.43 ? N7 6KD 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#