data_5JGP # _model_server_result.job_id O4k3H8Y7jpMrN9jL01Q0JQ _model_server_result.datetime_utc '2024-11-27 03:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5JGP # _exptl.entry_id 5JGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JGP _cell.length_a 57.241 _cell.length_b 73.663 _cell.length_c 236.428 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 14_655 -x+3/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 85.8615 36.8315 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id I _struct_conn.ptnr2_label_comp_id IOD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IOD _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.974 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JGP _atom_sites.fract_transf_matrix[1][1] 0.01747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 301 1 NO3 NO3 . C 3 IOD A 1 302 1 IOD IOD . D 3 IOD A 1 303 2 IOD IOD . E 3 IOD A 1 304 3 IOD IOD . F 3 IOD A 1 305 4 IOD IOD . G 3 IOD A 1 306 5 IOD IOD . H 3 IOD A 1 307 6 IOD IOD . I 3 IOD A 1 308 7 IOD IOD . J 3 IOD A 1 309 8 IOD IOD . K 3 IOD A 1 310 9 IOD IOD . L 3 IOD A 1 311 10 IOD IOD . M 3 IOD A 1 312 13 IOD IOD . N 3 IOD A 1 313 17 IOD IOD . O 4 HOH A 1 401 108 HOH HOH . O 4 HOH A 2 402 68 HOH HOH . O 4 HOH A 3 403 136 HOH HOH . O 4 HOH A 4 404 105 HOH HOH . O 4 HOH A 5 405 70 HOH HOH . O 4 HOH A 6 406 44 HOH HOH . O 4 HOH A 7 407 13 HOH HOH . O 4 HOH A 8 408 115 HOH HOH . O 4 HOH A 9 409 97 HOH HOH . O 4 HOH A 10 410 1 HOH HOH . O 4 HOH A 11 411 18 HOH HOH . O 4 HOH A 12 412 91 HOH HOH . O 4 HOH A 13 413 47 HOH HOH . O 4 HOH A 14 414 83 HOH HOH . O 4 HOH A 15 415 53 HOH HOH . O 4 HOH A 16 416 16 HOH HOH . O 4 HOH A 17 417 23 HOH HOH . O 4 HOH A 18 418 21 HOH HOH . O 4 HOH A 19 419 9 HOH HOH . O 4 HOH A 20 420 38 HOH HOH . O 4 HOH A 21 421 95 HOH HOH . O 4 HOH A 22 422 10 HOH HOH . O 4 HOH A 23 423 117 HOH HOH . O 4 HOH A 24 424 8 HOH HOH . O 4 HOH A 25 425 96 HOH HOH . O 4 HOH A 26 426 54 HOH HOH . O 4 HOH A 27 427 6 HOH HOH . O 4 HOH A 28 428 78 HOH HOH . O 4 HOH A 29 429 25 HOH HOH . O 4 HOH A 30 430 90 HOH HOH . O 4 HOH A 31 431 33 HOH HOH . O 4 HOH A 32 432 98 HOH HOH . O 4 HOH A 33 433 5 HOH HOH . O 4 HOH A 34 434 114 HOH HOH . O 4 HOH A 35 435 36 HOH HOH . O 4 HOH A 36 436 26 HOH HOH . O 4 HOH A 37 437 2 HOH HOH . O 4 HOH A 38 438 14 HOH HOH . O 4 HOH A 39 439 116 HOH HOH . O 4 HOH A 40 440 37 HOH HOH . O 4 HOH A 41 441 112 HOH HOH . O 4 HOH A 42 442 45 HOH HOH . O 4 HOH A 43 443 30 HOH HOH . O 4 HOH A 44 444 15 HOH HOH . O 4 HOH A 45 445 12 HOH HOH . O 4 HOH A 46 446 89 HOH HOH . O 4 HOH A 47 447 42 HOH HOH . O 4 HOH A 48 448 81 HOH HOH . O 4 HOH A 49 449 71 HOH HOH . O 4 HOH A 50 450 48 HOH HOH . O 4 HOH A 51 451 58 HOH HOH . O 4 HOH A 52 452 40 HOH HOH . O 4 HOH A 53 453 104 HOH HOH . O 4 HOH A 54 454 99 HOH HOH . O 4 HOH A 55 455 4 HOH HOH . O 4 HOH A 56 456 57 HOH HOH . O 4 HOH A 57 457 64 HOH HOH . O 4 HOH A 58 458 7 HOH HOH . O 4 HOH A 59 459 24 HOH HOH . O 4 HOH A 60 460 109 HOH HOH . O 4 HOH A 61 461 80 HOH HOH . O 4 HOH A 62 462 52 HOH HOH . O 4 HOH A 63 463 34 HOH HOH . O 4 HOH A 64 464 39 HOH HOH . O 4 HOH A 65 465 133 HOH HOH . O 4 HOH A 66 466 63 HOH HOH . O 4 HOH A 67 467 100 HOH HOH . O 4 HOH A 68 468 3 HOH HOH . O 4 HOH A 69 469 43 HOH HOH . O 4 HOH A 70 470 46 HOH HOH . O 4 HOH A 71 471 28 HOH HOH . O 4 HOH A 72 472 74 HOH HOH . O 4 HOH A 73 473 55 HOH HOH . O 4 HOH A 74 474 17 HOH HOH . O 4 HOH A 75 475 59 HOH HOH . O 4 HOH A 76 476 27 HOH HOH . O 4 HOH A 77 477 102 HOH HOH . O 4 HOH A 78 478 11 HOH HOH . O 4 HOH A 79 479 113 HOH HOH . O 4 HOH A 80 480 82 HOH HOH . O 4 HOH A 81 481 110 HOH HOH . O 4 HOH A 82 482 66 HOH HOH . O 4 HOH A 83 483 62 HOH HOH . O 4 HOH A 84 484 29 HOH HOH . O 4 HOH A 85 485 94 HOH HOH . O 4 HOH A 86 486 19 HOH HOH . O 4 HOH A 87 487 67 HOH HOH . O 4 HOH A 88 488 77 HOH HOH . O 4 HOH A 89 489 86 HOH HOH . O 4 HOH A 90 490 41 HOH HOH . O 4 HOH A 91 491 20 HOH HOH . O 4 HOH A 92 492 123 HOH HOH . O 4 HOH A 93 493 93 HOH HOH . O 4 HOH A 94 494 79 HOH HOH . O 4 HOH A 95 495 32 HOH HOH . O 4 HOH A 96 496 92 HOH HOH . O 4 HOH A 97 497 51 HOH HOH . O 4 HOH A 98 498 65 HOH HOH . O 4 HOH A 99 499 88 HOH HOH . O 4 HOH A 100 500 31 HOH HOH . O 4 HOH A 101 501 22 HOH HOH . O 4 HOH A 102 502 73 HOH HOH . O 4 HOH A 103 503 127 HOH HOH . O 4 HOH A 104 504 85 HOH HOH . O 4 HOH A 105 505 56 HOH HOH . O 4 HOH A 106 506 103 HOH HOH . O 4 HOH A 107 507 87 HOH HOH . O 4 HOH A 108 508 50 HOH HOH . O 4 HOH A 109 509 35 HOH HOH . O 4 HOH A 110 510 76 HOH HOH . O 4 HOH A 111 511 130 HOH HOH . O 4 HOH A 112 512 49 HOH HOH . O 4 HOH A 113 513 101 HOH HOH . O 4 HOH A 114 514 125 HOH HOH . O 4 HOH A 115 515 118 HOH HOH . O 4 HOH A 116 516 129 HOH HOH . O 4 HOH A 117 517 61 HOH HOH . O 4 HOH A 118 518 69 HOH HOH . O 4 HOH A 119 519 60 HOH HOH . O 4 HOH A 120 520 132 HOH HOH . O 4 HOH A 121 521 128 HOH HOH . O 4 HOH A 122 522 107 HOH HOH . O 4 HOH A 123 523 119 HOH HOH . O 4 HOH A 124 524 135 HOH HOH . O 4 HOH A 125 525 72 HOH HOH . O 4 HOH A 126 526 75 HOH HOH . O 4 HOH A 127 527 134 HOH HOH . O 4 HOH A 128 528 84 HOH HOH . O 4 HOH A 129 529 126 HOH HOH . O 4 HOH A 130 530 124 HOH HOH . O 4 HOH A 131 531 131 HOH HOH . O 4 HOH A 132 532 111 HOH HOH . O 4 HOH A 133 533 122 HOH HOH . O 4 HOH A 134 534 121 HOH HOH . O 4 HOH A 135 535 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 52.305 _atom_site.Cartn_y 9.04 _atom_site.Cartn_z 21.326 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 39.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #