data_5JGQ # _model_server_result.job_id 1rvbhTRDczJ7UMKxKlvGeg _model_server_result.datetime_utc '2024-11-25 12:15:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5JGQ # _exptl.entry_id 5JGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.57 _cell.angle_gamma 90 _cell.entry_id 5JGQ _cell.length_a 40.789 _cell.length_b 89.568 _cell.length_c 41.385 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 275 1_555 A SG CYS 155 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? disulf ? disulf2 B SG CYS 6 B CYS 275 1_555 B SG CYS 155 B CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 121 n n S C1 DMS sing 122 n n S C2 DMS sing 123 n n C1 H11 DMS sing 124 n n C1 H12 DMS sing 125 n n C1 H13 DMS sing 126 n n C2 H21 DMS sing 127 n n C2 H22 DMS sing 128 n n C2 H23 DMS sing 129 n n # _atom_sites.entry_id 5JGQ _atom_sites.fract_transf_matrix[1][1] 0.024517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 501 1 DMS DMS . D 3 6JY B 1 501 1 6JY AR7 . E 4 HOH A 1 601 152 HOH HOH . E 4 HOH A 2 602 272 HOH HOH . E 4 HOH A 3 603 100 HOH HOH . E 4 HOH A 4 604 11 HOH HOH . E 4 HOH A 5 605 153 HOH HOH . E 4 HOH A 6 606 193 HOH HOH . E 4 HOH A 7 607 140 HOH HOH . E 4 HOH A 8 608 197 HOH HOH . E 4 HOH A 9 609 136 HOH HOH . E 4 HOH A 10 610 57 HOH HOH . E 4 HOH A 11 611 179 HOH HOH . E 4 HOH A 12 612 139 HOH HOH . E 4 HOH A 13 613 10 HOH HOH . E 4 HOH A 14 614 196 HOH HOH . E 4 HOH A 15 615 168 HOH HOH . E 4 HOH A 16 616 221 HOH HOH . E 4 HOH A 17 617 187 HOH HOH . E 4 HOH A 18 618 264 HOH HOH . E 4 HOH A 19 619 107 HOH HOH . E 4 HOH A 20 620 167 HOH HOH . E 4 HOH A 21 621 106 HOH HOH . E 4 HOH A 22 622 258 HOH HOH . E 4 HOH A 23 623 210 HOH HOH . E 4 HOH A 24 624 122 HOH HOH . E 4 HOH A 25 625 271 HOH HOH . E 4 HOH A 26 626 214 HOH HOH . E 4 HOH A 27 627 183 HOH HOH . E 4 HOH A 28 628 185 HOH HOH . E 4 HOH A 29 629 117 HOH HOH . E 4 HOH A 30 630 226 HOH HOH . E 4 HOH A 31 631 212 HOH HOH . E 4 HOH A 32 632 274 HOH HOH . E 4 HOH A 33 633 3 HOH HOH . E 4 HOH A 34 634 174 HOH HOH . E 4 HOH A 35 635 51 HOH HOH . E 4 HOH A 36 636 105 HOH HOH . E 4 HOH A 37 637 157 HOH HOH . E 4 HOH A 38 638 266 HOH HOH . E 4 HOH A 39 639 240 HOH HOH . E 4 HOH A 40 640 184 HOH HOH . E 4 HOH A 41 641 219 HOH HOH . E 4 HOH A 42 642 142 HOH HOH . E 4 HOH A 43 643 169 HOH HOH . E 4 HOH A 44 644 52 HOH HOH . E 4 HOH A 45 645 172 HOH HOH . E 4 HOH A 46 646 195 HOH HOH . E 4 HOH A 47 647 200 HOH HOH . E 4 HOH A 48 648 177 HOH HOH . E 4 HOH A 49 649 171 HOH HOH . E 4 HOH A 50 650 213 HOH HOH . E 4 HOH A 51 651 87 HOH HOH . E 4 HOH A 52 652 189 HOH HOH . E 4 HOH A 53 653 265 HOH HOH . E 4 HOH A 54 654 229 HOH HOH . E 4 HOH A 55 655 110 HOH HOH . E 4 HOH A 56 656 104 HOH HOH . E 4 HOH A 57 657 276 HOH HOH . E 4 HOH A 58 658 120 HOH HOH . E 4 HOH A 59 659 178 HOH HOH . E 4 HOH A 60 660 86 HOH HOH . E 4 HOH A 61 661 227 HOH HOH . E 4 HOH A 62 662 186 HOH HOH . E 4 HOH A 63 663 118 HOH HOH . E 4 HOH A 64 664 181 HOH HOH . E 4 HOH A 65 665 155 HOH HOH . E 4 HOH A 66 666 215 HOH HOH . E 4 HOH A 67 667 78 HOH HOH . E 4 HOH A 68 668 206 HOH HOH . E 4 HOH A 69 669 156 HOH HOH . E 4 HOH A 70 670 154 HOH HOH . E 4 HOH A 71 671 137 HOH HOH . E 4 HOH A 72 672 231 HOH HOH . E 4 HOH A 73 673 54 HOH HOH . E 4 HOH A 74 674 261 HOH HOH . E 4 HOH A 75 675 237 HOH HOH . E 4 HOH A 76 676 217 HOH HOH . E 4 HOH A 77 677 108 HOH HOH . E 4 HOH A 78 678 103 HOH HOH . E 4 HOH A 79 679 22 HOH HOH . E 4 HOH A 80 680 176 HOH HOH . E 4 HOH A 81 681 228 HOH HOH . E 4 HOH A 82 682 36 HOH HOH . E 4 HOH A 83 683 81 HOH HOH . E 4 HOH A 84 684 235 HOH HOH . E 4 HOH A 85 685 267 HOH HOH . E 4 HOH A 86 686 123 HOH HOH . E 4 HOH A 87 687 135 HOH HOH . E 4 HOH A 88 688 58 HOH HOH . E 4 HOH A 89 689 249 HOH HOH . E 4 HOH A 90 690 94 HOH HOH . E 4 HOH A 91 691 121 HOH HOH . E 4 HOH A 92 692 180 HOH HOH . E 4 HOH A 93 693 98 HOH HOH . E 4 HOH A 94 694 124 HOH HOH . E 4 HOH A 95 695 233 HOH HOH . E 4 HOH A 96 696 173 HOH HOH . E 4 HOH A 97 697 170 HOH HOH . E 4 HOH A 98 698 204 HOH HOH . E 4 HOH A 99 699 141 HOH HOH . E 4 HOH A 100 700 269 HOH HOH . E 4 HOH A 101 701 160 HOH HOH . E 4 HOH A 102 702 109 HOH HOH . E 4 HOH A 103 703 143 HOH HOH . E 4 HOH A 104 704 112 HOH HOH . E 4 HOH A 105 705 126 HOH HOH . E 4 HOH A 106 706 278 HOH HOH . E 4 HOH A 107 707 19 HOH HOH . E 4 HOH A 108 708 243 HOH HOH . E 4 HOH A 109 709 245 HOH HOH . E 4 HOH A 110 710 182 HOH HOH . E 4 HOH A 111 711 251 HOH HOH . E 4 HOH A 112 712 203 HOH HOH . E 4 HOH A 113 713 277 HOH HOH . E 4 HOH A 114 714 101 HOH HOH . E 4 HOH A 115 715 259 HOH HOH . E 4 HOH A 116 716 234 HOH HOH . E 4 HOH A 117 717 202 HOH HOH . E 4 HOH A 118 718 175 HOH HOH . E 4 HOH A 119 719 273 HOH HOH . E 4 HOH A 120 720 119 HOH HOH . E 4 HOH A 121 721 244 HOH HOH . E 4 HOH A 122 722 198 HOH HOH . E 4 HOH A 123 723 248 HOH HOH . E 4 HOH A 124 724 252 HOH HOH . E 4 HOH A 125 725 125 HOH HOH . E 4 HOH A 126 726 56 HOH HOH . E 4 HOH A 127 727 208 HOH HOH . E 4 HOH A 128 728 230 HOH HOH . E 4 HOH A 129 729 238 HOH HOH . E 4 HOH A 130 730 260 HOH HOH . E 4 HOH A 131 731 158 HOH HOH . E 4 HOH A 132 732 41 HOH HOH . E 4 HOH A 133 733 209 HOH HOH . E 4 HOH A 134 734 253 HOH HOH . E 4 HOH A 135 735 247 HOH HOH . E 4 HOH A 136 736 222 HOH HOH . E 4 HOH A 137 737 224 HOH HOH . E 4 HOH A 138 738 55 HOH HOH . E 4 HOH A 139 739 83 HOH HOH . E 4 HOH A 140 740 161 HOH HOH . F 4 HOH B 1 601 45 HOH HOH . F 4 HOH B 2 602 111 HOH HOH . F 4 HOH B 3 603 16 HOH HOH . F 4 HOH B 4 604 239 HOH HOH . F 4 HOH B 5 605 166 HOH HOH . F 4 HOH B 6 606 82 HOH HOH . F 4 HOH B 7 607 149 HOH HOH . F 4 HOH B 8 608 93 HOH HOH . F 4 HOH B 9 609 69 HOH HOH . F 4 HOH B 10 610 34 HOH HOH . F 4 HOH B 11 611 67 HOH HOH . F 4 HOH B 12 612 150 HOH HOH . F 4 HOH B 13 613 28 HOH HOH . F 4 HOH B 14 614 46 HOH HOH . F 4 HOH B 15 615 145 HOH HOH . F 4 HOH B 16 616 60 HOH HOH . F 4 HOH B 17 617 47 HOH HOH . F 4 HOH B 18 618 74 HOH HOH . F 4 HOH B 19 619 162 HOH HOH . F 4 HOH B 20 620 130 HOH HOH . F 4 HOH B 21 621 133 HOH HOH . F 4 HOH B 22 622 20 HOH HOH . F 4 HOH B 23 623 50 HOH HOH . F 4 HOH B 24 624 91 HOH HOH . F 4 HOH B 25 625 191 HOH HOH . F 4 HOH B 26 626 163 HOH HOH . F 4 HOH B 27 627 7 HOH HOH . F 4 HOH B 28 628 113 HOH HOH . F 4 HOH B 29 629 18 HOH HOH . F 4 HOH B 30 630 80 HOH HOH . F 4 HOH B 31 631 77 HOH HOH . F 4 HOH B 32 632 15 HOH HOH . F 4 HOH B 33 633 23 HOH HOH . F 4 HOH B 34 634 134 HOH HOH . F 4 HOH B 35 635 146 HOH HOH . F 4 HOH B 36 636 24 HOH HOH . F 4 HOH B 37 637 79 HOH HOH . F 4 HOH B 38 638 262 HOH HOH . F 4 HOH B 39 639 102 HOH HOH . F 4 HOH B 40 640 207 HOH HOH . F 4 HOH B 41 641 223 HOH HOH . F 4 HOH B 42 642 32 HOH HOH . F 4 HOH B 43 643 8 HOH HOH . F 4 HOH B 44 644 115 HOH HOH . F 4 HOH B 45 645 116 HOH HOH . F 4 HOH B 46 646 31 HOH HOH . F 4 HOH B 47 647 147 HOH HOH . F 4 HOH B 48 648 66 HOH HOH . F 4 HOH B 49 649 37 HOH HOH . F 4 HOH B 50 650 85 HOH HOH . F 4 HOH B 51 651 165 HOH HOH . F 4 HOH B 52 652 90 HOH HOH . F 4 HOH B 53 653 13 HOH HOH . F 4 HOH B 54 654 6 HOH HOH . F 4 HOH B 55 655 44 HOH HOH . F 4 HOH B 56 656 21 HOH HOH . F 4 HOH B 57 657 114 HOH HOH . F 4 HOH B 58 658 5 HOH HOH . F 4 HOH B 59 659 9 HOH HOH . F 4 HOH B 60 660 190 HOH HOH . F 4 HOH B 61 661 220 HOH HOH . F 4 HOH B 62 662 159 HOH HOH . F 4 HOH B 63 663 27 HOH HOH . F 4 HOH B 64 664 64 HOH HOH . F 4 HOH B 65 665 164 HOH HOH . F 4 HOH B 66 666 35 HOH HOH . F 4 HOH B 67 667 199 HOH HOH . F 4 HOH B 68 668 12 HOH HOH . F 4 HOH B 69 669 236 HOH HOH . F 4 HOH B 70 670 63 HOH HOH . F 4 HOH B 71 671 131 HOH HOH . F 4 HOH B 72 672 70 HOH HOH . F 4 HOH B 73 673 39 HOH HOH . F 4 HOH B 74 674 71 HOH HOH . F 4 HOH B 75 675 129 HOH HOH . F 4 HOH B 76 676 268 HOH HOH . F 4 HOH B 77 677 255 HOH HOH . F 4 HOH B 78 678 246 HOH HOH . F 4 HOH B 79 679 72 HOH HOH . F 4 HOH B 80 680 188 HOH HOH . F 4 HOH B 81 681 84 HOH HOH . F 4 HOH B 82 682 48 HOH HOH . F 4 HOH B 83 683 99 HOH HOH . F 4 HOH B 84 684 263 HOH HOH . F 4 HOH B 85 685 201 HOH HOH . F 4 HOH B 86 686 62 HOH HOH . F 4 HOH B 87 687 61 HOH HOH . F 4 HOH B 88 688 205 HOH HOH . F 4 HOH B 89 689 216 HOH HOH . F 4 HOH B 90 690 250 HOH HOH . F 4 HOH B 91 691 96 HOH HOH . F 4 HOH B 92 692 4 HOH HOH . F 4 HOH B 93 693 275 HOH HOH . F 4 HOH B 94 694 30 HOH HOH . F 4 HOH B 95 695 14 HOH HOH . F 4 HOH B 96 696 2 HOH HOH . F 4 HOH B 97 697 89 HOH HOH . F 4 HOH B 98 698 132 HOH HOH . F 4 HOH B 99 699 88 HOH HOH . F 4 HOH B 100 700 1 HOH HOH . F 4 HOH B 101 701 65 HOH HOH . F 4 HOH B 102 702 254 HOH HOH . F 4 HOH B 103 703 270 HOH HOH . F 4 HOH B 104 704 97 HOH HOH . F 4 HOH B 105 705 29 HOH HOH . F 4 HOH B 106 706 73 HOH HOH . F 4 HOH B 107 707 42 HOH HOH . F 4 HOH B 108 708 211 HOH HOH . F 4 HOH B 109 709 17 HOH HOH . F 4 HOH B 110 710 192 HOH HOH . F 4 HOH B 111 711 75 HOH HOH . F 4 HOH B 112 712 225 HOH HOH . F 4 HOH B 113 713 127 HOH HOH . F 4 HOH B 114 714 232 HOH HOH . F 4 HOH B 115 715 194 HOH HOH . F 4 HOH B 116 716 49 HOH HOH . F 4 HOH B 117 717 76 HOH HOH . F 4 HOH B 118 718 241 HOH HOH . F 4 HOH B 119 719 25 HOH HOH . F 4 HOH B 120 720 218 HOH HOH . F 4 HOH B 121 721 128 HOH HOH . F 4 HOH B 122 722 26 HOH HOH . F 4 HOH B 123 723 257 HOH HOH . F 4 HOH B 124 724 43 HOH HOH . F 4 HOH B 125 725 53 HOH HOH . F 4 HOH B 126 726 256 HOH HOH . F 4 HOH B 127 727 38 HOH HOH . F 4 HOH B 128 728 138 HOH HOH . F 4 HOH B 129 729 68 HOH HOH . F 4 HOH B 130 730 144 HOH HOH . F 4 HOH B 131 731 148 HOH HOH . F 4 HOH B 132 732 40 HOH HOH . F 4 HOH B 133 733 92 HOH HOH . F 4 HOH B 134 734 95 HOH HOH . F 4 HOH B 135 735 59 HOH HOH . F 4 HOH B 136 736 151 HOH HOH . F 4 HOH B 137 737 242 HOH HOH . F 4 HOH B 138 738 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 78.777 -34.541 48.108 1 25.87 ? S DMS 501 A 1 HETATM 2 O O DMS . . . C 2 78.337 -34.817 49.5 1 21.94 ? O DMS 501 A 1 HETATM 3 C C1 DMS . . . C 2 77.636 -35.231 47.061 1 23.66 ? C1 DMS 501 A 1 HETATM 4 C C2 DMS . . . C 2 78.623 -32.874 47.726 1 26.69 ? C2 DMS 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #