data_5JH2
#
_model_server_result.job_id            kFwsrhM02UAOE9wSzMjNKQ 
_model_server_result.datetime_utc      '2024-11-19 15:34:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5JH2 
#
_exptl.entry_id    5JH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-2'-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JH2 
_cell.length_a            47.219 
_cell.length_b            55.857 
_cell.length_c            105.74 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                A2P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-2'-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P A2P doub 1 n n 
P1 O2P A2P sing 2 n n 
P1 O3P A2P sing 3 n n 
P1 O2' A2P sing 4 n n 
O2P HOP2 A2P sing 5 n n 
O3P HOP3 A2P sing 6 n n 
P2 O4P A2P doub 7 n n 
P2 O5P A2P sing 8 n n 
P2 O6P A2P sing 9 n n 
P2 O5' A2P sing 10 n n 
O5P HOP5 A2P sing 11 n n 
O6P HOP6 A2P sing 12 n n 
O5' C5' A2P sing 13 n n 
C5' C4' A2P sing 14 n n 
C5' "H5'1" A2P sing 15 n n 
C5' "H5'2" A2P sing 16 n n 
C4' O4' A2P sing 17 n n 
C4' C3' A2P sing 18 n n 
C4' H4' A2P sing 19 n n 
O4' C1' A2P sing 20 n n 
C3' O3' A2P sing 21 n n 
C3' C2' A2P sing 22 n n 
C3' H3' A2P sing 23 n n 
O3' HO3' A2P sing 24 n n 
C2' O2' A2P sing 25 n n 
C2' C1' A2P sing 26 n n 
C2' H2' A2P sing 27 n n 
C1' N9 A2P sing 28 n n 
C1' H1' A2P sing 29 n n 
N9 C8 A2P sing 30 n y 
N9 C4 A2P sing 31 n y 
C8 N7 A2P doub 32 n y 
C8 H8 A2P sing 33 n n 
N7 C5 A2P sing 34 n y 
C5 C6 A2P sing 35 n y 
C5 C4 A2P doub 36 n y 
C6 N6 A2P sing 37 n n 
C6 N1 A2P doub 38 n y 
N6 HN61 A2P sing 39 n n 
N6 HN62 A2P sing 40 n n 
N1 C2 A2P sing 41 n y 
C2 N3 A2P doub 42 n y 
C2 H2 A2P sing 43 n n 
N3 C4 A2P sing 44 n y 
#
_atom_sites.entry_id                     5JH2 
_atom_sites.fract_transf_matrix[1][1]    0.021178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A2P A 1 401 1 A2P A2P . 
C 3 EDO A 1 402 1 EDO EDO . 
D 4 CL A 1 403 1 CL CL . 
E 5 HOH A 1 501 152 HOH HOH . 
E 5 HOH A 2 502 153 HOH HOH . 
E 5 HOH A 3 503 122 HOH HOH . 
E 5 HOH A 4 504 126 HOH HOH . 
E 5 HOH A 5 505 185 HOH HOH . 
E 5 HOH A 6 506 48 HOH HOH . 
E 5 HOH A 7 507 31 HOH HOH . 
E 5 HOH A 8 508 70 HOH HOH . 
E 5 HOH A 9 509 8 HOH HOH . 
E 5 HOH A 10 510 81 HOH HOH . 
E 5 HOH A 11 511 101 HOH HOH . 
E 5 HOH A 12 512 137 HOH HOH . 
E 5 HOH A 13 513 173 HOH HOH . 
E 5 HOH A 14 514 22 HOH HOH . 
E 5 HOH A 15 515 134 HOH HOH . 
E 5 HOH A 16 516 10 HOH HOH . 
E 5 HOH A 17 517 33 HOH HOH . 
E 5 HOH A 18 518 78 HOH HOH . 
E 5 HOH A 19 519 86 HOH HOH . 
E 5 HOH A 20 520 190 HOH HOH . 
E 5 HOH A 21 521 123 HOH HOH . 
E 5 HOH A 22 522 92 HOH HOH . 
E 5 HOH A 23 523 20 HOH HOH . 
E 5 HOH A 24 524 212 HOH HOH . 
E 5 HOH A 25 525 52 HOH HOH . 
E 5 HOH A 26 526 145 HOH HOH . 
E 5 HOH A 27 527 63 HOH HOH . 
E 5 HOH A 28 528 80 HOH HOH . 
E 5 HOH A 29 529 29 HOH HOH . 
E 5 HOH A 30 530 49 HOH HOH . 
E 5 HOH A 31 531 108 HOH HOH . 
E 5 HOH A 32 532 4 HOH HOH . 
E 5 HOH A 33 533 46 HOH HOH . 
E 5 HOH A 34 534 208 HOH HOH . 
E 5 HOH A 35 535 144 HOH HOH . 
E 5 HOH A 36 536 99 HOH HOH . 
E 5 HOH A 37 537 60 HOH HOH . 
E 5 HOH A 38 538 191 HOH HOH . 
E 5 HOH A 39 539 15 HOH HOH . 
E 5 HOH A 40 540 203 HOH HOH . 
E 5 HOH A 41 541 19 HOH HOH . 
E 5 HOH A 42 542 213 HOH HOH . 
E 5 HOH A 43 543 97 HOH HOH . 
E 5 HOH A 44 544 11 HOH HOH . 
E 5 HOH A 45 545 65 HOH HOH . 
E 5 HOH A 46 546 187 HOH HOH . 
E 5 HOH A 47 547 181 HOH HOH . 
E 5 HOH A 48 548 77 HOH HOH . 
E 5 HOH A 49 549 142 HOH HOH . 
E 5 HOH A 50 550 117 HOH HOH . 
E 5 HOH A 51 551 69 HOH HOH . 
E 5 HOH A 52 552 84 HOH HOH . 
E 5 HOH A 53 553 112 HOH HOH . 
E 5 HOH A 54 554 13 HOH HOH . 
E 5 HOH A 55 555 177 HOH HOH . 
E 5 HOH A 56 556 51 HOH HOH . 
E 5 HOH A 57 557 12 HOH HOH . 
E 5 HOH A 58 558 209 HOH HOH . 
E 5 HOH A 59 559 113 HOH HOH . 
E 5 HOH A 60 560 93 HOH HOH . 
E 5 HOH A 61 561 16 HOH HOH . 
E 5 HOH A 62 562 35 HOH HOH . 
E 5 HOH A 63 563 30 HOH HOH . 
E 5 HOH A 64 564 111 HOH HOH . 
E 5 HOH A 65 565 47 HOH HOH . 
E 5 HOH A 66 566 124 HOH HOH . 
E 5 HOH A 67 567 91 HOH HOH . 
E 5 HOH A 68 568 34 HOH HOH . 
E 5 HOH A 69 569 102 HOH HOH . 
E 5 HOH A 70 570 151 HOH HOH . 
E 5 HOH A 71 571 105 HOH HOH . 
E 5 HOH A 72 572 143 HOH HOH . 
E 5 HOH A 73 573 176 HOH HOH . 
E 5 HOH A 74 574 42 HOH HOH . 
E 5 HOH A 75 575 147 HOH HOH . 
E 5 HOH A 76 576 89 HOH HOH . 
E 5 HOH A 77 577 23 HOH HOH . 
E 5 HOH A 78 578 24 HOH HOH . 
E 5 HOH A 79 579 205 HOH HOH . 
E 5 HOH A 80 580 109 HOH HOH . 
E 5 HOH A 81 581 157 HOH HOH . 
E 5 HOH A 82 582 1 HOH HOH . 
E 5 HOH A 83 583 162 HOH HOH . 
E 5 HOH A 84 584 88 HOH HOH . 
E 5 HOH A 85 585 170 HOH HOH . 
E 5 HOH A 86 586 21 HOH HOH . 
E 5 HOH A 87 587 72 HOH HOH . 
E 5 HOH A 88 588 182 HOH HOH . 
E 5 HOH A 89 589 59 HOH HOH . 
E 5 HOH A 90 590 3 HOH HOH . 
E 5 HOH A 91 591 196 HOH HOH . 
E 5 HOH A 92 592 168 HOH HOH . 
E 5 HOH A 93 593 9 HOH HOH . 
E 5 HOH A 94 594 53 HOH HOH . 
E 5 HOH A 95 595 26 HOH HOH . 
E 5 HOH A 96 596 5 HOH HOH . 
E 5 HOH A 97 597 119 HOH HOH . 
E 5 HOH A 98 598 40 HOH HOH . 
E 5 HOH A 99 599 68 HOH HOH . 
E 5 HOH A 100 600 199 HOH HOH . 
E 5 HOH A 101 601 27 HOH HOH . 
E 5 HOH A 102 602 18 HOH HOH . 
E 5 HOH A 103 603 85 HOH HOH . 
E 5 HOH A 104 604 45 HOH HOH . 
E 5 HOH A 105 605 55 HOH HOH . 
E 5 HOH A 106 606 125 HOH HOH . 
E 5 HOH A 107 607 37 HOH HOH . 
E 5 HOH A 108 608 154 HOH HOH . 
E 5 HOH A 109 609 14 HOH HOH . 
E 5 HOH A 110 610 79 HOH HOH . 
E 5 HOH A 111 611 50 HOH HOH . 
E 5 HOH A 112 612 25 HOH HOH . 
E 5 HOH A 113 613 43 HOH HOH . 
E 5 HOH A 114 614 32 HOH HOH . 
E 5 HOH A 115 615 54 HOH HOH . 
E 5 HOH A 116 616 155 HOH HOH . 
E 5 HOH A 117 617 165 HOH HOH . 
E 5 HOH A 118 618 38 HOH HOH . 
E 5 HOH A 119 619 75 HOH HOH . 
E 5 HOH A 120 620 94 HOH HOH . 
E 5 HOH A 121 621 58 HOH HOH . 
E 5 HOH A 122 622 2 HOH HOH . 
E 5 HOH A 123 623 57 HOH HOH . 
E 5 HOH A 124 624 41 HOH HOH . 
E 5 HOH A 125 625 171 HOH HOH . 
E 5 HOH A 126 626 149 HOH HOH . 
E 5 HOH A 127 627 121 HOH HOH . 
E 5 HOH A 128 628 103 HOH HOH . 
E 5 HOH A 129 629 95 HOH HOH . 
E 5 HOH A 130 630 7 HOH HOH . 
E 5 HOH A 131 631 36 HOH HOH . 
E 5 HOH A 132 632 76 HOH HOH . 
E 5 HOH A 133 633 188 HOH HOH . 
E 5 HOH A 134 634 6 HOH HOH . 
E 5 HOH A 135 635 195 HOH HOH . 
E 5 HOH A 136 636 166 HOH HOH . 
E 5 HOH A 137 637 116 HOH HOH . 
E 5 HOH A 138 638 189 HOH HOH . 
E 5 HOH A 139 639 214 HOH HOH . 
E 5 HOH A 140 640 186 HOH HOH . 
E 5 HOH A 141 641 67 HOH HOH . 
E 5 HOH A 142 642 201 HOH HOH . 
E 5 HOH A 143 643 87 HOH HOH . 
E 5 HOH A 144 644 169 HOH HOH . 
E 5 HOH A 145 645 66 HOH HOH . 
E 5 HOH A 146 646 114 HOH HOH . 
E 5 HOH A 147 647 156 HOH HOH . 
E 5 HOH A 148 648 39 HOH HOH . 
E 5 HOH A 149 649 160 HOH HOH . 
E 5 HOH A 150 650 192 HOH HOH . 
E 5 HOH A 151 651 56 HOH HOH . 
E 5 HOH A 152 652 96 HOH HOH . 
E 5 HOH A 153 653 71 HOH HOH . 
E 5 HOH A 154 654 90 HOH HOH . 
E 5 HOH A 155 655 148 HOH HOH . 
E 5 HOH A 156 656 83 HOH HOH . 
E 5 HOH A 157 657 17 HOH HOH . 
E 5 HOH A 158 658 28 HOH HOH . 
E 5 HOH A 159 659 146 HOH HOH . 
E 5 HOH A 160 660 198 HOH HOH . 
E 5 HOH A 161 661 62 HOH HOH . 
E 5 HOH A 162 662 197 HOH HOH . 
E 5 HOH A 163 663 150 HOH HOH . 
E 5 HOH A 164 664 138 HOH HOH . 
E 5 HOH A 165 665 130 HOH HOH . 
E 5 HOH A 166 666 139 HOH HOH . 
E 5 HOH A 167 667 136 HOH HOH . 
E 5 HOH A 168 668 110 HOH HOH . 
E 5 HOH A 169 669 161 HOH HOH . 
E 5 HOH A 170 670 127 HOH HOH . 
E 5 HOH A 171 671 133 HOH HOH . 
E 5 HOH A 172 672 129 HOH HOH . 
E 5 HOH A 173 673 82 HOH HOH . 
E 5 HOH A 174 674 141 HOH HOH . 
E 5 HOH A 175 675 44 HOH HOH . 
E 5 HOH A 176 676 120 HOH HOH . 
E 5 HOH A 177 677 158 HOH HOH . 
E 5 HOH A 178 678 98 HOH HOH . 
E 5 HOH A 179 679 100 HOH HOH . 
E 5 HOH A 180 680 64 HOH HOH . 
E 5 HOH A 181 681 106 HOH HOH . 
E 5 HOH A 182 682 179 HOH HOH . 
E 5 HOH A 183 683 202 HOH HOH . 
E 5 HOH A 184 684 211 HOH HOH . 
E 5 HOH A 185 685 73 HOH HOH . 
E 5 HOH A 186 686 207 HOH HOH . 
E 5 HOH A 187 687 132 HOH HOH . 
E 5 HOH A 188 688 193 HOH HOH . 
E 5 HOH A 189 689 74 HOH HOH . 
E 5 HOH A 190 690 135 HOH HOH . 
E 5 HOH A 191 691 159 HOH HOH . 
E 5 HOH A 192 692 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 A2P . . . B 2 -3.571 14.971 26.727 1 29.63 ? P1 A2P 401 A 1 
HETATM 2 O O1P A2P . . . B 2 -2.863 13.864 25.992 1 28.65 ? O1P A2P 401 A 1 
HETATM 3 O O2P A2P . . . B 2 -2.609 15.93 27.372 1 26.96 ? O2P A2P 401 A 1 
HETATM 4 O O3P A2P . . . B 2 -4.585 14.376 27.737 1 33.11 ? O3P A2P 401 A 1 
HETATM 5 P P2 A2P . . . B 2 -2.817 20.306 20.281 1 37.82 ? P2 A2P 401 A 1 
HETATM 6 O O4P A2P . . . B 2 -3.45 20.129 18.85 1 30 ? O4P A2P 401 A 1 
HETATM 7 O O5P A2P . . . B 2 -3.129 21.676 20.864 1 39.83 ? O5P A2P 401 A 1 
HETATM 8 O O6P A2P . . . B 2 -1.419 19.747 20.304 1 31.3 ? O6P A2P 401 A 1 
HETATM 9 O O5' A2P . . . B 2 -3.719 19.186 21.114 1 30.37 ? O5' A2P 401 A 1 
HETATM 10 C C5' A2P . . . B 2 -3.44 19.04 22.497 1 33.01 ? C5' A2P 401 A 1 
HETATM 11 C C4' A2P . . . B 2 -4.602 18.217 23.055 1 28.49 ? C4' A2P 401 A 1 
HETATM 12 O O4' A2P . . . B 2 -4.531 16.968 22.397 1 27.9 ? O4' A2P 401 A 1 
HETATM 13 C C3' A2P . . . B 2 -4.44 17.947 24.55 1 30.84 ? C3' A2P 401 A 1 
HETATM 14 O O3' A2P . . . B 2 -5.7 18.15 25.187 1 33.01 ? O3' A2P 401 A 1 
HETATM 15 C C2' A2P . . . B 2 -3.987 16.529 24.68 1 28.64 ? C2' A2P 401 A 1 
HETATM 16 O O2' A2P . . . B 2 -4.537 15.836 25.833 1 28.27 ? O2' A2P 401 A 1 
HETATM 17 C C1' A2P . . . B 2 -4.49 15.897 23.359 1 27.81 ? C1' A2P 401 A 1 
HETATM 18 N N9 A2P . . . B 2 -3.699 14.782 22.814 1 24.17 ? N9 A2P 401 A 1 
HETATM 19 C C8 A2P . . . B 2 -2.371 14.699 22.689 1 22.94 ? C8 A2P 401 A 1 
HETATM 20 N N7 A2P . . . B 2 -2.019 13.57 22.129 1 22.63 ? N7 A2P 401 A 1 
HETATM 21 C C5 A2P . . . B 2 -3.168 12.897 21.832 1 21.22 ? C5 A2P 401 A 1 
HETATM 22 C C6 A2P . . . B 2 -3.491 11.618 21.249 1 21.3 ? C6 A2P 401 A 1 
HETATM 23 N N6 A2P . . . B 2 -2.488 10.835 20.844 1 22.98 ? N6 A2P 401 A 1 
HETATM 24 N N1 A2P . . . B 2 -4.826 11.235 21.124 1 23.1 ? N1 A2P 401 A 1 
HETATM 25 C C2 A2P . . . B 2 -5.761 12.066 21.599 1 22.76 ? C2 A2P 401 A 1 
HETATM 26 N N3 A2P . . . B 2 -5.556 13.278 22.171 1 21.77 ? N3 A2P 401 A 1 
HETATM 27 C C4 A2P . . . B 2 -4.259 13.716 22.312 1 21.58 ? C4 A2P 401 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           578 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           27 
#