data_5JH6 # _model_server_result.job_id QQY4ruOxNJ1aUYm6iXTB0A _model_server_result.datetime_utc '2024-11-18 06:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5JH6 # _exptl.entry_id 5JH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.947 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]phenyl prop-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JH6 _cell.length_a 58.303 _cell.length_b 133.579 _cell.length_c 145.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 174 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C31 _struct_conn.ptnr2_label_comp_id T92 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id T92 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.481 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H25 Cl N6 O2' _chem_comp.formula_weight 464.947 _chem_comp.id T92 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]phenyl prop-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C01 T92 sing 290 n n N02 C05 T92 sing 291 n n N02 C03 T92 sing 292 n n C05 C06 T92 sing 293 n n C03 C04 T92 sing 294 n n C06 N07 T92 sing 295 n n C04 N07 T92 sing 296 n n N07 C08 T92 sing 297 n n O32 C29 T92 doub 298 n n C08 C09 T92 doub 299 n y C08 C11 T92 sing 300 n y C09 C10 T92 sing 301 n y C25 C26 T92 doub 302 n y C25 C24 T92 sing 303 n y C26 C27 T92 sing 304 n y C29 C30 T92 sing 305 n n C29 O28 T92 sing 306 n n C31 C30 T92 doub 307 n n C11 C12 T92 doub 308 n y C10 C13 T92 doub 309 n y C24 C23 T92 doub 310 n y C27 O28 T92 sing 311 n n C27 C22 T92 doub 312 n y C12 C13 T92 sing 313 n y C13 N14 T92 sing 314 n n C23 C22 T92 sing 315 n y C22 N21 T92 sing 316 n n N14 C15 T92 sing 317 n n N33 C15 T92 doub 318 n y N33 C20 T92 sing 319 n y C15 N16 T92 sing 320 n y N21 C20 T92 sing 321 n n C20 C18 T92 doub 322 n y N16 C17 T92 doub 323 n y C18 C17 T92 sing 324 n y C18 CL19 T92 sing 325 n n C01 H1 T92 sing 326 n n C01 H2 T92 sing 327 n n C01 H3 T92 sing 328 n n C03 H5 T92 sing 329 n n C03 H6 T92 sing 330 n n C04 H7 T92 sing 331 n n C04 H8 T92 sing 332 n n C05 H9 T92 sing 333 n n C05 H10 T92 sing 334 n n C06 H11 T92 sing 335 n n C06 H12 T92 sing 336 n n C09 H13 T92 sing 337 n n C10 H14 T92 sing 338 n n C11 H15 T92 sing 339 n n C12 H16 T92 sing 340 n n N14 H17 T92 sing 341 n n C17 H18 T92 sing 342 n n N21 H19 T92 sing 343 n n C23 H20 T92 sing 344 n n C24 H21 T92 sing 345 n n C25 H22 T92 sing 346 n n C26 H23 T92 sing 347 n n C30 H24 T92 sing 348 n n C31 H26 T92 sing 349 n n C31 H27 T92 sing 350 n n # _atom_sites.entry_id 5JH6 _atom_sites.fract_transf_matrix[1][1] 0.017152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T92 A 1 601 1 T92 T92 . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 T92 . . . B 2 -21.989 -52.414 -21.598 1 86.59 ? C01 T92 601 A 1 HETATM 2 N N02 T92 . . . B 2 -21.093 -51.5 -21.575 1 82.03 ? N02 T92 601 A 1 HETATM 3 C C03 T92 . . . B 2 -19.894 -52.038 -21.182 1 84.03 ? C03 T92 601 A 1 HETATM 4 C C04 T92 . . . B 2 -18.813 -50.999 -20.897 1 94.18 ? C04 T92 601 A 1 HETATM 5 C C05 T92 . . . B 2 -21.535 -50.502 -20.755 1 80.73 ? C05 T92 601 A 1 HETATM 6 C C06 T92 . . . B 2 -20.475 -49.437 -20.481 1 93.08 ? C06 T92 601 A 1 HETATM 7 N N07 T92 . . . B 2 -19.275 -50.017 -19.933 1 93.38 ? N07 T92 601 A 1 HETATM 8 C C08 T92 . . . B 2 -18.356 -49.208 -19.094 1 71.15 ? C08 T92 601 A 1 HETATM 9 C C09 T92 . . . B 2 -18.882 -48.206 -18.285 1 66.95 ? C09 T92 601 A 1 HETATM 10 C C10 T92 . . . B 2 -18.031 -47.434 -17.482 1 94.42 ? C10 T92 601 A 1 HETATM 11 C C11 T92 . . . B 2 -16.987 -49.444 -19.11 1 72.81 ? C11 T92 601 A 1 HETATM 12 C C12 T92 . . . B 2 -16.139 -48.667 -18.31 1 78.15 ? C12 T92 601 A 1 HETATM 13 C C13 T92 . . . B 2 -16.665 -47.666 -17.494 1 84.01 ? C13 T92 601 A 1 HETATM 14 N N14 T92 . . . B 2 -15.801 -46.827 -16.643 1 90.58 ? N14 T92 601 A 1 HETATM 15 C C15 T92 . . . B 2 -14.475 -47.243 -16.179 1 73.61 ? C15 T92 601 A 1 HETATM 16 N N16 T92 . . . B 2 -13.704 -46.315 -15.671 1 93.39 ? N16 T92 601 A 1 HETATM 17 C C17 T92 . . . B 2 -12.485 -46.592 -15.225 1 96 ? C17 T92 601 A 1 HETATM 18 C C18 T92 . . . B 2 -12.039 -47.912 -15.308 1 91.25 ? C18 T92 601 A 1 HETATM 19 CL CL19 T92 . . . B 2 -10.412 -48.309 -14.718 1 98.27 ? CL19 T92 601 A 1 HETATM 20 C C20 T92 . . . B 2 -12.871 -48.874 -15.847 1 90.85 ? C20 T92 601 A 1 HETATM 21 N N21 T92 . . . B 2 -12.445 -50.275 -15.947 1 108.15 ? N21 T92 601 A 1 HETATM 22 C C22 T92 . . . B 2 -12.695 -51.134 -17.145 1 97.68 ? C22 T92 601 A 1 HETATM 23 C C23 T92 . . . B 2 -13.837 -51.947 -17.235 1 93.16 ? C23 T92 601 A 1 HETATM 24 C C24 T92 . . . B 2 -14.024 -52.743 -18.38 1 96.91 ? C24 T92 601 A 1 HETATM 25 C C25 T92 . . . B 2 -13.091 -52.742 -19.431 1 104.89 ? C25 T92 601 A 1 HETATM 26 C C26 T92 . . . B 2 -11.947 -51.929 -19.339 1 104.78 ? C26 T92 601 A 1 HETATM 27 C C27 T92 . . . B 2 -11.762 -51.144 -18.199 1 107.9 ? C27 T92 601 A 1 HETATM 28 O O28 T92 . . . B 2 -10.604 -50.307 -18.088 1 130.56 ? O28 T92 601 A 1 HETATM 29 C C29 T92 . . . B 2 -9.35 -50.954 -18.21 1 102.14 ? C29 T92 601 A 1 HETATM 30 C C30 T92 . . . B 2 -8.137 -50.021 -18.231 1 107.04 ? C30 T92 601 A 1 HETATM 31 C C31 T92 . . . B 2 -8.628 -48.591 -18.011 1 89.38 ? C31 T92 601 A 1 HETATM 32 O O32 T92 . . . B 2 -9.259 -52.138 -18.292 1 108.79 ? O32 T92 601 A 1 HETATM 33 N N33 T92 . . . B 2 -14.086 -48.506 -16.269 1 80.86 ? N33 T92 601 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 478 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #